Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07240 and LRK53_RS07245 are separated by 104 nucleotides LRK53_RS07245 and LRK53_RS07250 are separated by 14 nucleotides LRK53_RS07250 and LRK53_RS07255 are separated by 21 nucleotides LRK53_RS07255 and LRK53_RS07260 are separated by 5 nucleotides
LRK53_RS07240: LRK53_RS07240 - nitronate monooxygenase, at 1,629,708 to 1,630,775
_RS07240
LRK53_RS07245: LRK53_RS07245 - ribosome silencing factor, at 1,630,880 to 1,631,266
_RS07245
LRK53_RS07250: LRK53_RS07250 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,631,281 to 1,631,751
_RS07250
LRK53_RS07255: LRK53_RS07255 - GNAT family N-acetyltransferase, at 1,631,773 to 1,632,222
_RS07255
LRK53_RS07260: LRK53_RS07260 - Maf family nucleotide pyrophosphatase, at 1,632,228 to 1,632,803
_RS07260
Position (kb) 1630
1631
1632 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1629.904 kb on - strand, within LRK53_RS07240 at 1629.904 kb on - strand, within LRK53_RS07240 at 1629.904 kb on - strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.155 kb on + strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.156 kb on - strand, within LRK53_RS07240 at 1630.827 kb on + strand at 1630.827 kb on + strand at 1630.827 kb on + strand at 1630.828 kb on - strand at 1630.828 kb on - strand at 1630.828 kb on - strand at 1630.828 kb on - strand at 1630.829 kb on + strand at 1630.829 kb on + strand at 1630.829 kb on + strand at 1630.829 kb on + strand at 1630.829 kb on + strand at 1630.830 kb on - strand at 1630.830 kb on - strand at 1630.830 kb on - strand at 1630.895 kb on - strand at 1631.199 kb on - strand, within LRK53_RS07245 at 1631.199 kb on - strand, within LRK53_RS07245 at 1631.199 kb on - strand, within LRK53_RS07245 at 1631.199 kb on - strand, within LRK53_RS07245 at 1631.347 kb on + strand, within LRK53_RS07250 at 1631.372 kb on + strand, within LRK53_RS07250 at 1631.372 kb on + strand, within LRK53_RS07250 at 1631.372 kb on + strand, within LRK53_RS07250 at 1631.372 kb on + strand, within LRK53_RS07250 at 1631.372 kb on + strand, within LRK53_RS07250 at 1631.372 kb on + strand, within LRK53_RS07250 at 1631.373 kb on - strand, within LRK53_RS07250 at 1631.373 kb on - strand, within LRK53_RS07250 at 1631.704 kb on + strand, within LRK53_RS07250 at 1631.704 kb on + strand, within LRK53_RS07250 at 1631.704 kb on + strand, within LRK53_RS07250 at 1631.704 kb on + strand, within LRK53_RS07250 at 1631.704 kb on + strand, within LRK53_RS07250 at 1631.704 kb on + strand, within LRK53_RS07250 at 1631.704 kb on + strand, within LRK53_RS07250 at 1631.704 kb on + strand, within LRK53_RS07250 at 1631.705 kb on - strand at 1631.705 kb on - strand at 1631.705 kb on - strand at 1631.705 kb on - strand at 1631.738 kb on - strand at 1631.738 kb on - strand at 1631.738 kb on - strand at 1631.815 kb on - strand at 1631.815 kb on - strand at 1631.851 kb on + strand, within LRK53_RS07255 at 1631.851 kb on + strand, within LRK53_RS07255 at 1631.851 kb on + strand, within LRK53_RS07255 at 1631.851 kb on + strand, within LRK53_RS07255 at 1631.974 kb on + strand, within LRK53_RS07255 at 1631.975 kb on - strand, within LRK53_RS07255 at 1631.975 kb on - strand, within LRK53_RS07255 at 1631.975 kb on - strand, within LRK53_RS07255 at 1631.975 kb on - strand, within LRK53_RS07255 at 1632.163 kb on + strand, within LRK53_RS07255 at 1632.163 kb on + strand, within LRK53_RS07255 at 1632.163 kb on + strand, within LRK53_RS07255 at 1632.163 kb on + strand, within LRK53_RS07255 at 1632.164 kb on - strand, within LRK53_RS07255 at 1632.164 kb on - strand, within LRK53_RS07255 at 1632.164 kb on - strand, within LRK53_RS07255 at 1632.205 kb on + strand at 1632.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 1,629,904 - LRK53_RS07240 0.18 -0.3 1,629,904 - LRK53_RS07240 0.18 -0.2 1,629,904 - LRK53_RS07240 0.18 +1.5 1,630,155 + LRK53_RS07240 0.42 -0.5 1,630,155 + LRK53_RS07240 0.42 +1.0 1,630,155 + LRK53_RS07240 0.42 -0.5 1,630,155 + LRK53_RS07240 0.42 -0.2 1,630,155 + LRK53_RS07240 0.42 -2.2 1,630,155 + LRK53_RS07240 0.42 -0.6 1,630,155 + LRK53_RS07240 0.42 -0.1 1,630,155 + LRK53_RS07240 0.42 -1.5 1,630,155 + LRK53_RS07240 0.42 -1.8 1,630,155 + LRK53_RS07240 0.42 +1.1 1,630,155 + LRK53_RS07240 0.42 +0.5 1,630,155 + LRK53_RS07240 0.42 -1.8 1,630,155 + LRK53_RS07240 0.42 -0.1 1,630,155 + LRK53_RS07240 0.42 -1.3 1,630,156 - LRK53_RS07240 0.42 -2.3 1,630,156 - LRK53_RS07240 0.42 -2.8 1,630,156 - LRK53_RS07240 0.42 -0.9 1,630,156 - LRK53_RS07240 0.42 +0.0 1,630,156 - LRK53_RS07240 0.42 +0.1 1,630,156 - LRK53_RS07240 0.42 -1.5 1,630,156 - LRK53_RS07240 0.42 +0.6 1,630,156 - LRK53_RS07240 0.42 -1.8 1,630,156 - LRK53_RS07240 0.42 -1.6 1,630,156 - LRK53_RS07240 0.42 -0.3 1,630,156 - LRK53_RS07240 0.42 -1.3 1,630,156 - LRK53_RS07240 0.42 -1.8 1,630,156 - LRK53_RS07240 0.42 +0.4 1,630,156 - LRK53_RS07240 0.42 +0.4 1,630,156 - LRK53_RS07240 0.42 -0.1 1,630,156 - LRK53_RS07240 0.42 +0.3 1,630,156 - LRK53_RS07240 0.42 -0.3 1,630,156 - LRK53_RS07240 0.42 -1.4 1,630,156 - LRK53_RS07240 0.42 +0.9 1,630,156 - LRK53_RS07240 0.42 -0.5 1,630,156 - LRK53_RS07240 0.42 -1.6 1,630,156 - LRK53_RS07240 0.42 -1.4 1,630,156 - LRK53_RS07240 0.42 -1.4 1,630,156 - LRK53_RS07240 0.42 -1.4 1,630,156 - LRK53_RS07240 0.42 -0.6 1,630,156 - LRK53_RS07240 0.42 -1.4 1,630,156 - LRK53_RS07240 0.42 -0.3 1,630,156 - LRK53_RS07240 0.42 -1.9 1,630,156 - LRK53_RS07240 0.42 -0.0 1,630,156 - LRK53_RS07240 0.42 -0.8 1,630,156 - LRK53_RS07240 0.42 -0.1 1,630,156 - LRK53_RS07240 0.42 +1.1 1,630,156 - LRK53_RS07240 0.42 -0.3 1,630,156 - LRK53_RS07240 0.42 -1.7 1,630,156 - LRK53_RS07240 0.42 -0.3 1,630,827 + -0.8 1,630,827 + -0.3 1,630,827 + -1.3 1,630,828 - -0.3 1,630,828 - -0.4 1,630,828 - -1.8 1,630,828 - -1.1 1,630,829 + +0.6 1,630,829 + -0.6 1,630,829 + -1.6 1,630,829 + -1.5 1,630,829 + -4.3 1,630,830 - -2.1 1,630,830 - -1.3 1,630,830 - +0.1 1,630,895 - +1.0 1,631,199 - LRK53_RS07245 0.82 -0.8 1,631,199 - LRK53_RS07245 0.82 -1.1 1,631,199 - LRK53_RS07245 0.82 +0.2 1,631,199 - LRK53_RS07245 0.82 -1.5 1,631,347 + LRK53_RS07250 0.14 -1.6 1,631,372 + LRK53_RS07250 0.19 +0.7 1,631,372 + LRK53_RS07250 0.19 -0.4 1,631,372 + LRK53_RS07250 0.19 -0.6 1,631,372 + LRK53_RS07250 0.19 +0.4 1,631,372 + LRK53_RS07250 0.19 -3.6 1,631,372 + LRK53_RS07250 0.19 +1.3 1,631,373 - LRK53_RS07250 0.20 -1.0 1,631,373 - LRK53_RS07250 0.20 +1.0 1,631,704 + LRK53_RS07250 0.90 -1.2 1,631,704 + LRK53_RS07250 0.90 -0.4 1,631,704 + LRK53_RS07250 0.90 -0.5 1,631,704 + LRK53_RS07250 0.90 -0.1 1,631,704 + LRK53_RS07250 0.90 +0.1 1,631,704 + LRK53_RS07250 0.90 +0.0 1,631,704 + LRK53_RS07250 0.90 -0.3 1,631,704 + LRK53_RS07250 0.90 +0.1 1,631,705 - -0.5 1,631,705 - -0.1 1,631,705 - +0.0 1,631,705 - -1.3 1,631,738 - -0.3 1,631,738 - +2.0 1,631,738 - +0.8 1,631,815 - -1.3 1,631,815 - -0.8 1,631,851 + LRK53_RS07255 0.17 -0.5 1,631,851 + LRK53_RS07255 0.17 -1.5 1,631,851 + LRK53_RS07255 0.17 +0.6 1,631,851 + LRK53_RS07255 0.17 -0.3 1,631,974 + LRK53_RS07255 0.45 -0.6 1,631,975 - LRK53_RS07255 0.45 -1.3 1,631,975 - LRK53_RS07255 0.45 +1.4 1,631,975 - LRK53_RS07255 0.45 +0.7 1,631,975 - LRK53_RS07255 0.45 -1.6 1,632,163 + LRK53_RS07255 0.87 +0.2 1,632,163 + LRK53_RS07255 0.87 -0.1 1,632,163 + LRK53_RS07255 0.87 -0.7 1,632,163 + LRK53_RS07255 0.87 -1.3 1,632,164 - LRK53_RS07255 0.87 -1.8 1,632,164 - LRK53_RS07255 0.87 -0.6 1,632,164 - LRK53_RS07255 0.87 -0.7 1,632,205 + -1.5 1,632,206 - +0.4
Or see this region's nucleotide sequence