Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07010 and LRK53_RS07015 overlap by 1 nucleotides LRK53_RS07015 and LRK53_RS07020 are separated by 67 nucleotides LRK53_RS07020 and LRK53_RS07025 overlap by 4 nucleotides LRK53_RS07025 and LRK53_RS07030 are separated by 5 nucleotides
LRK53_RS07010: LRK53_RS07010 - EamA family transporter, at 1,578,541 to 1,578,921
_RS07010
LRK53_RS07015: LRK53_RS07015 - alpha/beta fold hydrolase, at 1,578,921 to 1,579,757
_RS07015
LRK53_RS07020: LRK53_RS07020 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,579,825 to 1,580,793
_RS07020
LRK53_RS07025: LRK53_RS07025 - ABC transporter ATP-binding protein, at 1,580,790 to 1,581,539
_RS07025
LRK53_RS07030: LRK53_RS07030 - ABC transporter permease, at 1,581,545 to 1,582,675
_RS07030
Position (kb) 1579
1580
1581 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1579.027 kb on + strand, within LRK53_RS07015 at 1579.027 kb on + strand, within LRK53_RS07015 at 1579.955 kb on - strand, within LRK53_RS07020 at 1579.955 kb on - strand, within LRK53_RS07020 at 1579.988 kb on + strand, within LRK53_RS07020 at 1579.988 kb on + strand, within LRK53_RS07020 at 1579.988 kb on + strand, within LRK53_RS07020 at 1579.989 kb on - strand, within LRK53_RS07020 at 1579.989 kb on - strand, within LRK53_RS07020 at 1580.847 kb on + strand at 1580.847 kb on + strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.924 kb on + strand, within LRK53_RS07025 at 1580.924 kb on + strand, within LRK53_RS07025 at 1580.937 kb on - strand, within LRK53_RS07025 at 1581.547 kb on - strand at 1581.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 1,579,027 + LRK53_RS07015 0.13 -1.1 1,579,027 + LRK53_RS07015 0.13 +1.7 1,579,955 - LRK53_RS07020 0.13 -0.4 1,579,955 - LRK53_RS07020 0.13 -1.8 1,579,988 + LRK53_RS07020 0.17 -0.6 1,579,988 + LRK53_RS07020 0.17 -0.8 1,579,988 + LRK53_RS07020 0.17 -0.6 1,579,989 - LRK53_RS07020 0.17 -0.5 1,579,989 - LRK53_RS07020 0.17 -0.2 1,580,847 + -0.8 1,580,847 + -1.1 1,580,848 - +0.3 1,580,848 - -1.2 1,580,848 - -0.7 1,580,848 - -1.0 1,580,848 - -2.3 1,580,924 + LRK53_RS07025 0.18 +0.4 1,580,924 + LRK53_RS07025 0.18 -0.4 1,580,937 - LRK53_RS07025 0.20 +2.0 1,581,547 - -1.1 1,581,547 - -0.6
Or see this region's nucleotide sequence