Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06165

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06155 and LRK53_RS06160 overlap by 4 nucleotidesLRK53_RS06160 and LRK53_RS06165 are separated by 106 nucleotidesLRK53_RS06165 and LRK53_RS06170 overlap by 4 nucleotidesLRK53_RS06170 and LRK53_RS06175 overlap by 1 nucleotidesLRK53_RS06175 and LRK53_RS06180 are separated by 29 nucleotides LRK53_RS06155: LRK53_RS06155 - DUF2069 domain-containing protein, at 1,413,644 to 1,414,015 _RS06155 LRK53_RS06160: LRK53_RS06160 - NAD(P)H:quinone oxidoreductase, at 1,414,012 to 1,414,614 _RS06160 LRK53_RS06165: LRK53_RS06165 - YihY family inner membrane protein, at 1,414,721 to 1,415,998 _RS06165 LRK53_RS06170: LRK53_RS06170 - TlpA family protein disulfide reductase, at 1,415,995 to 1,416,480 _RS06170 LRK53_RS06175: LRK53_RS06175 - acylphosphatase, at 1,416,480 to 1,416,746 _RS06175 LRK53_RS06180: LRK53_RS06180 - DUF779 domain-containing protein, at 1,416,776 to 1,417,159 _RS06180 Position (kb) 1414 1415 1416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1413.730 kb on - strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1414.042 kb on - strandat 1414.181 kb on + strand, within LRK53_RS06160at 1414.181 kb on + strand, within LRK53_RS06160at 1414.182 kb on - strand, within LRK53_RS06160at 1414.586 kb on + strandat 1414.586 kb on + strandat 1414.587 kb on - strandat 1414.587 kb on - strandat 1414.587 kb on - strandat 1414.589 kb on + strandat 1414.589 kb on + strandat 1414.589 kb on + strandat 1414.589 kb on + strandat 1414.589 kb on + strandat 1414.658 kb on + strandat 1414.659 kb on - strandat 1414.659 kb on - strandat 1414.663 kb on + strandat 1414.823 kb on + strandat 1414.823 kb on + strandat 1414.824 kb on - strandat 1414.824 kb on - strandat 1414.824 kb on - strandat 1415.129 kb on + strand, within LRK53_RS06165at 1415.189 kb on + strand, within LRK53_RS06165at 1415.189 kb on + strand, within LRK53_RS06165at 1415.190 kb on - strand, within LRK53_RS06165at 1415.190 kb on - strand, within LRK53_RS06165at 1415.190 kb on - strand, within LRK53_RS06165at 1415.190 kb on - strand, within LRK53_RS06165at 1415.303 kb on + strand, within LRK53_RS06165at 1415.303 kb on + strand, within LRK53_RS06165at 1415.303 kb on + strand, within LRK53_RS06165at 1415.303 kb on + strand, within LRK53_RS06165at 1415.303 kb on + strand, within LRK53_RS06165at 1415.426 kb on + strand, within LRK53_RS06165at 1415.426 kb on + strand, within LRK53_RS06165at 1415.426 kb on + strand, within LRK53_RS06165at 1415.426 kb on + strand, within LRK53_RS06165at 1415.426 kb on + strand, within LRK53_RS06165at 1415.426 kb on + strand, within LRK53_RS06165at 1415.426 kb on + strand, within LRK53_RS06165at 1415.427 kb on - strand, within LRK53_RS06165at 1415.427 kb on - strand, within LRK53_RS06165at 1415.427 kb on - strand, within LRK53_RS06165at 1415.427 kb on - strand, within LRK53_RS06165at 1415.427 kb on - strand, within LRK53_RS06165at 1415.427 kb on - strand, within LRK53_RS06165at 1415.427 kb on - strand, within LRK53_RS06165at 1415.438 kb on + strand, within LRK53_RS06165at 1415.438 kb on + strand, within LRK53_RS06165at 1415.439 kb on - strand, within LRK53_RS06165at 1415.439 kb on - strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.480 kb on + strand, within LRK53_RS06165at 1415.481 kb on - strand, within LRK53_RS06165at 1415.481 kb on - strand, within LRK53_RS06165at 1415.481 kb on - strand, within LRK53_RS06165at 1415.481 kb on - strand, within LRK53_RS06165at 1415.544 kb on - strand, within LRK53_RS06165at 1415.675 kb on + strand, within LRK53_RS06165at 1415.676 kb on - strand, within LRK53_RS06165at 1415.676 kb on - strand, within LRK53_RS06165at 1415.702 kb on + strand, within LRK53_RS06165at 1415.703 kb on - strand, within LRK53_RS06165at 1415.703 kb on - strand, within LRK53_RS06165at 1415.799 kb on + strand, within LRK53_RS06165at 1415.799 kb on + strand, within LRK53_RS06165at 1415.799 kb on + strand, within LRK53_RS06165at 1415.800 kb on - strand, within LRK53_RS06165at 1415.800 kb on - strand, within LRK53_RS06165at 1415.800 kb on - strand, within LRK53_RS06165at 1415.800 kb on - strand, within LRK53_RS06165at 1415.800 kb on - strand, within LRK53_RS06165at 1415.800 kb on - strand, within LRK53_RS06165at 1415.802 kb on - strand, within LRK53_RS06165at 1415.802 kb on - strand, within LRK53_RS06165at 1415.948 kb on + strandat 1415.948 kb on + strandat 1415.948 kb on + strandat 1415.948 kb on + strandat 1415.948 kb on + strandat 1415.948 kb on + strandat 1415.948 kb on + strandat 1415.948 kb on + strandat 1415.949 kb on - strandat 1415.949 kb on - strandat 1415.949 kb on - strandat 1415.949 kb on - strandat 1415.949 kb on - strandat 1415.949 kb on - strandat 1415.949 kb on - strandat 1416.059 kb on + strand, within LRK53_RS06170at 1416.102 kb on + strand, within LRK53_RS06170at 1416.103 kb on - strand, within LRK53_RS06170at 1416.166 kb on + strand, within LRK53_RS06170at 1416.166 kb on + strand, within LRK53_RS06170at 1416.166 kb on + strand, within LRK53_RS06170at 1416.166 kb on + strand, within LRK53_RS06170at 1416.166 kb on + strand, within LRK53_RS06170at 1416.166 kb on + strand, within LRK53_RS06170at 1416.167 kb on - strand, within LRK53_RS06170at 1416.167 kb on - strand, within LRK53_RS06170at 1416.167 kb on - strand, within LRK53_RS06170at 1416.167 kb on - strand, within LRK53_RS06170at 1416.263 kb on - strand, within LRK53_RS06170at 1416.263 kb on - strand, within LRK53_RS06170at 1416.319 kb on + strand, within LRK53_RS06170at 1416.391 kb on + strand, within LRK53_RS06170at 1416.391 kb on + strand, within LRK53_RS06170at 1416.391 kb on + strand, within LRK53_RS06170at 1416.391 kb on + strand, within LRK53_RS06170at 1416.391 kb on + strand, within LRK53_RS06170at 1416.392 kb on - strand, within LRK53_RS06170at 1416.392 kb on - strand, within LRK53_RS06170at 1416.392 kb on - strand, within LRK53_RS06170at 1416.528 kb on + strand, within LRK53_RS06175at 1416.927 kb on + strand, within LRK53_RS06180at 1416.927 kb on + strand, within LRK53_RS06180at 1416.928 kb on - strand, within LRK53_RS06180at 1416.928 kb on - strand, within LRK53_RS06180at 1416.933 kb on + strand, within LRK53_RS06180at 1416.934 kb on - strand, within LRK53_RS06180at 1416.951 kb on + strand, within LRK53_RS06180at 1416.951 kb on + strand, within LRK53_RS06180at 1416.951 kb on + strand, within LRK53_RS06180at 1416.951 kb on + strand, within LRK53_RS06180at 1416.951 kb on + strand, within LRK53_RS06180at 1416.951 kb on + strand, within LRK53_RS06180at 1416.952 kb on - strand, within LRK53_RS06180at 1416.952 kb on - strand, within LRK53_RS06180at 1416.952 kb on - strand, within LRK53_RS06180at 1416.952 kb on - strand, within LRK53_RS06180at 1416.952 kb on - strand, within LRK53_RS06180

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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1,413,730 - LRK53_RS06155 0.23 +0.4
1,413,792 + LRK53_RS06155 0.40 +3.4
1,413,792 + LRK53_RS06155 0.40 -0.6
1,413,792 + LRK53_RS06155 0.40 -0.9
1,413,792 + LRK53_RS06155 0.40 -1.2
1,413,792 + LRK53_RS06155 0.40 -0.7
1,413,792 + LRK53_RS06155 0.40 +0.6
1,413,792 + LRK53_RS06155 0.40 +0.9
1,413,793 - LRK53_RS06155 0.40 -0.5
1,413,793 - LRK53_RS06155 0.40 +0.8
1,413,793 - LRK53_RS06155 0.40 +1.0
1,413,793 - LRK53_RS06155 0.40 -3.1
1,413,793 - LRK53_RS06155 0.40 -1.1
1,413,793 - LRK53_RS06155 0.40 -1.5
1,413,793 - LRK53_RS06155 0.40 -0.6
1,413,793 - LRK53_RS06155 0.40 -3.0
1,413,793 - LRK53_RS06155 0.40 -2.2
1,413,793 - LRK53_RS06155 0.40 -1.4
1,413,793 - LRK53_RS06155 0.40 +0.2
1,413,793 - LRK53_RS06155 0.40 -0.4
1,413,793 - LRK53_RS06155 0.40 -1.4
1,414,042 - -0.7
1,414,181 + LRK53_RS06160 0.28 -0.1
1,414,181 + LRK53_RS06160 0.28 -0.3
1,414,182 - LRK53_RS06160 0.28 +1.3
1,414,586 + +0.8
1,414,586 + -0.3
1,414,587 - -0.3
1,414,587 - +1.2
1,414,587 - -0.4
1,414,589 + -0.7
1,414,589 + +0.6
1,414,589 + +0.5
1,414,589 + +0.9
1,414,589 + -1.7
1,414,658 + -0.5
1,414,659 - -0.2
1,414,659 - -2.0
1,414,663 + -0.5
1,414,823 + -1.6
1,414,823 + +0.6
1,414,824 - -0.8
1,414,824 - -1.3
1,414,824 - -0.8
1,415,129 + LRK53_RS06165 0.32 -0.4
1,415,189 + LRK53_RS06165 0.37 -0.3
1,415,189 + LRK53_RS06165 0.37 +1.3
1,415,190 - LRK53_RS06165 0.37 -0.8
1,415,190 - LRK53_RS06165 0.37 -0.1
1,415,190 - LRK53_RS06165 0.37 -1.3
1,415,190 - LRK53_RS06165 0.37 -1.3
1,415,303 + LRK53_RS06165 0.46 -1.1
1,415,303 + LRK53_RS06165 0.46 -1.9
1,415,303 + LRK53_RS06165 0.46 -1.6
1,415,303 + LRK53_RS06165 0.46 -1.3
1,415,303 + LRK53_RS06165 0.46 -0.4
1,415,426 + LRK53_RS06165 0.55 -1.4
1,415,426 + LRK53_RS06165 0.55 -0.9
1,415,426 + LRK53_RS06165 0.55 +0.5
1,415,426 + LRK53_RS06165 0.55 +0.2
1,415,426 + LRK53_RS06165 0.55 -1.1
1,415,426 + LRK53_RS06165 0.55 -2.0
1,415,426 + LRK53_RS06165 0.55 -0.3
1,415,427 - LRK53_RS06165 0.55 -1.2
1,415,427 - LRK53_RS06165 0.55 -0.2
1,415,427 - LRK53_RS06165 0.55 -1.1
1,415,427 - LRK53_RS06165 0.55 +0.9
1,415,427 - LRK53_RS06165 0.55 -0.9
1,415,427 - LRK53_RS06165 0.55 -1.4
1,415,427 - LRK53_RS06165 0.55 -0.2
1,415,438 + LRK53_RS06165 0.56 -1.3
1,415,438 + LRK53_RS06165 0.56 -1.3
1,415,439 - LRK53_RS06165 0.56 -0.6
1,415,439 - LRK53_RS06165 0.56 -1.1
1,415,480 + LRK53_RS06165 0.59 +0.1
1,415,480 + LRK53_RS06165 0.59 -0.4
1,415,480 + LRK53_RS06165 0.59 -1.1
1,415,480 + LRK53_RS06165 0.59 -0.5
1,415,480 + LRK53_RS06165 0.59 -1.0
1,415,480 + LRK53_RS06165 0.59 +1.5
1,415,480 + LRK53_RS06165 0.59 -0.1
1,415,480 + LRK53_RS06165 0.59 -1.1
1,415,480 + LRK53_RS06165 0.59 +0.4
1,415,480 + LRK53_RS06165 0.59 -1.3
1,415,481 - LRK53_RS06165 0.59 -2.0
1,415,481 - LRK53_RS06165 0.59 +0.5
1,415,481 - LRK53_RS06165 0.59 -2.3
1,415,481 - LRK53_RS06165 0.59 -0.3
1,415,544 - LRK53_RS06165 0.64 -0.8
1,415,675 + LRK53_RS06165 0.75 -0.2
1,415,676 - LRK53_RS06165 0.75 -1.7
1,415,676 - LRK53_RS06165 0.75 +0.3
1,415,702 + LRK53_RS06165 0.77 -2.2
1,415,703 - LRK53_RS06165 0.77 -2.2
1,415,703 - LRK53_RS06165 0.77 -0.8
1,415,799 + LRK53_RS06165 0.84 -2.0
1,415,799 + LRK53_RS06165 0.84 -1.0
1,415,799 + LRK53_RS06165 0.84 -0.4
1,415,800 - LRK53_RS06165 0.84 -0.5
1,415,800 - LRK53_RS06165 0.84 -1.1
1,415,800 - LRK53_RS06165 0.84 -0.3
1,415,800 - LRK53_RS06165 0.84 -0.6
1,415,800 - LRK53_RS06165 0.84 +0.3
1,415,800 - LRK53_RS06165 0.84 -0.1
1,415,802 - LRK53_RS06165 0.85 +0.0
1,415,802 - LRK53_RS06165 0.85 -0.7
1,415,948 + -1.4
1,415,948 + +0.7
1,415,948 + -1.0
1,415,948 + -0.3
1,415,948 + +0.5
1,415,948 + -0.1
1,415,948 + -1.1
1,415,948 + -0.6
1,415,949 - -0.8
1,415,949 - -1.7
1,415,949 - +0.7
1,415,949 - +0.2
1,415,949 - +1.0
1,415,949 - -1.1
1,415,949 - +0.4
1,416,059 + LRK53_RS06170 0.13 -1.0
1,416,102 + LRK53_RS06170 0.22 -2.4
1,416,103 - LRK53_RS06170 0.22 +0.6
1,416,166 + LRK53_RS06170 0.35 -1.1
1,416,166 + LRK53_RS06170 0.35 +0.7
1,416,166 + LRK53_RS06170 0.35 -1.7
1,416,166 + LRK53_RS06170 0.35 +0.7
1,416,166 + LRK53_RS06170 0.35 +0.1
1,416,166 + LRK53_RS06170 0.35 -1.9
1,416,167 - LRK53_RS06170 0.35 -0.9
1,416,167 - LRK53_RS06170 0.35 +0.5
1,416,167 - LRK53_RS06170 0.35 -1.7
1,416,167 - LRK53_RS06170 0.35 -0.0
1,416,263 - LRK53_RS06170 0.55 +0.5
1,416,263 - LRK53_RS06170 0.55 -0.7
1,416,319 + LRK53_RS06170 0.67 -1.1
1,416,391 + LRK53_RS06170 0.81 +0.2
1,416,391 + LRK53_RS06170 0.81 -1.8
1,416,391 + LRK53_RS06170 0.81 -0.7
1,416,391 + LRK53_RS06170 0.81 -0.4
1,416,391 + LRK53_RS06170 0.81 -1.4
1,416,392 - LRK53_RS06170 0.82 -0.0
1,416,392 - LRK53_RS06170 0.82 -3.0
1,416,392 - LRK53_RS06170 0.82 -0.2
1,416,528 + LRK53_RS06175 0.18 -2.0
1,416,927 + LRK53_RS06180 0.39 +0.4
1,416,927 + LRK53_RS06180 0.39 -0.8
1,416,928 - LRK53_RS06180 0.40 -0.7
1,416,928 - LRK53_RS06180 0.40 +0.4
1,416,933 + LRK53_RS06180 0.41 -2.4
1,416,934 - LRK53_RS06180 0.41 -0.4
1,416,951 + LRK53_RS06180 0.46 -0.7
1,416,951 + LRK53_RS06180 0.46 +1.4
1,416,951 + LRK53_RS06180 0.46 +0.2
1,416,951 + LRK53_RS06180 0.46 -1.4
1,416,951 + LRK53_RS06180 0.46 -0.4
1,416,951 + LRK53_RS06180 0.46 -2.8
1,416,952 - LRK53_RS06180 0.46 +0.8
1,416,952 - LRK53_RS06180 0.46 -0.7
1,416,952 - LRK53_RS06180 0.46 -1.1
1,416,952 - LRK53_RS06180 0.46 -0.6
1,416,952 - LRK53_RS06180 0.46 -0.8

Or see this region's nucleotide sequence