Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05785

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05775 and LRK53_RS05780 are separated by 65 nucleotidesLRK53_RS05780 and LRK53_RS05785 are separated by 15 nucleotidesLRK53_RS05785 and LRK53_RS05790 are separated by 9 nucleotidesLRK53_RS05790 and LRK53_RS05795 overlap by 4 nucleotides LRK53_RS05775: LRK53_RS05775 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,341,944 to 1,343,308 _RS05775 LRK53_RS05780: LRK53_RS05780 - type II secretion system protein N, at 1,343,374 to 1,344,162 _RS05780 LRK53_RS05785: LRK53_RS05785 - inositol-phosphate phosphatase, at 1,344,178 to 1,344,966 _RS05785 LRK53_RS05790: LRK53_RS05790 - ADP compounds hydrolase NudE, at 1,344,976 to 1,345,533 _RS05790 LRK53_RS05795: LRK53_RS05795 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 1,345,530 to 1,346,351 _RS05795 Position (kb) 1344 1345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1343.213 kb on + strandat 1343.392 kb on + strandat 1343.392 kb on + strandat 1343.392 kb on + strandat 1343.392 kb on + strandat 1343.392 kb on + strandat 1343.392 kb on + strandat 1343.392 kb on + strandat 1343.393 kb on - strandat 1343.393 kb on - strandat 1343.393 kb on - strandat 1343.393 kb on - strandat 1343.411 kb on + strandat 1343.412 kb on - strandat 1343.412 kb on - strandat 1344.253 kb on + strandat 1344.253 kb on + strandat 1344.253 kb on + strandat 1344.253 kb on + strandat 1344.253 kb on + strandat 1344.253 kb on + strandat 1344.253 kb on + strandat 1344.253 kb on + strandat 1344.257 kb on - strand, within LRK53_RS05785at 1344.379 kb on + strand, within LRK53_RS05785at 1344.379 kb on + strand, within LRK53_RS05785at 1344.379 kb on + strand, within LRK53_RS05785at 1344.379 kb on + strand, within LRK53_RS05785at 1344.380 kb on - strand, within LRK53_RS05785at 1344.380 kb on - strand, within LRK53_RS05785at 1344.380 kb on - strand, within LRK53_RS05785at 1344.380 kb on - strand, within LRK53_RS05785at 1344.380 kb on - strand, within LRK53_RS05785at 1344.380 kb on - strand, within LRK53_RS05785at 1344.380 kb on - strand, within LRK53_RS05785at 1344.527 kb on + strand, within LRK53_RS05785at 1344.527 kb on + strand, within LRK53_RS05785at 1344.544 kb on + strand, within LRK53_RS05785at 1344.544 kb on + strand, within LRK53_RS05785at 1344.545 kb on - strand, within LRK53_RS05785at 1344.748 kb on + strand, within LRK53_RS05785at 1344.748 kb on + strand, within LRK53_RS05785at 1344.749 kb on - strand, within LRK53_RS05785at 1344.749 kb on - strand, within LRK53_RS05785at 1344.964 kb on + strandat 1344.964 kb on + strandat 1344.965 kb on - strandat 1344.987 kb on - strandat 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.081 kb on + strand, within LRK53_RS05790at 1345.082 kb on - strand, within LRK53_RS05790at 1345.082 kb on - strand, within LRK53_RS05790at 1345.082 kb on - strand, within LRK53_RS05790at 1345.082 kb on - strand, within LRK53_RS05790at 1345.082 kb on - strand, within LRK53_RS05790at 1345.082 kb on - strand, within LRK53_RS05790at 1345.186 kb on + strand, within LRK53_RS05790at 1345.187 kb on - strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.324 kb on + strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.325 kb on - strand, within LRK53_RS05790at 1345.504 kb on + strandat 1345.504 kb on + strandat 1345.505 kb on - strandat 1345.550 kb on + strandat 1345.551 kb on - strandat 1345.551 kb on - strandat 1345.620 kb on + strand, within LRK53_RS05795at 1345.620 kb on + strand, within LRK53_RS05795at 1345.620 kb on + strand, within LRK53_RS05795at 1345.620 kb on + strand, within LRK53_RS05795at 1345.620 kb on + strand, within LRK53_RS05795at 1345.621 kb on - strand, within LRK53_RS05795at 1345.621 kb on - strand, within LRK53_RS05795at 1345.621 kb on - strand, within LRK53_RS05795at 1345.795 kb on - strand, within LRK53_RS05795at 1345.821 kb on - strand, within LRK53_RS05795at 1345.821 kb on - strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.929 kb on + strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795at 1345.930 kb on - strand, within LRK53_RS05795

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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1,343,213 + +0.5
1,343,392 + -1.2
1,343,392 + -0.8
1,343,392 + -2.4
1,343,392 + -0.8
1,343,392 + +0.3
1,343,392 + +0.3
1,343,392 + -0.1
1,343,393 - +0.2
1,343,393 - -1.3
1,343,393 - -0.2
1,343,393 - -0.0
1,343,411 + +0.1
1,343,412 - -0.1
1,343,412 - -0.1
1,344,253 + +0.9
1,344,253 + -0.2
1,344,253 + +0.9
1,344,253 + +0.8
1,344,253 + -0.3
1,344,253 + -0.7
1,344,253 + -1.6
1,344,253 + -3.2
1,344,257 - LRK53_RS05785 0.10 +0.1
1,344,379 + LRK53_RS05785 0.25 -0.7
1,344,379 + LRK53_RS05785 0.25 +0.6
1,344,379 + LRK53_RS05785 0.25 -1.9
1,344,379 + LRK53_RS05785 0.25 +0.8
1,344,380 - LRK53_RS05785 0.26 -0.4
1,344,380 - LRK53_RS05785 0.26 -1.2
1,344,380 - LRK53_RS05785 0.26 +0.4
1,344,380 - LRK53_RS05785 0.26 -0.7
1,344,380 - LRK53_RS05785 0.26 -0.6
1,344,380 - LRK53_RS05785 0.26 -1.1
1,344,380 - LRK53_RS05785 0.26 -0.6
1,344,527 + LRK53_RS05785 0.44 -0.4
1,344,527 + LRK53_RS05785 0.44 -0.1
1,344,544 + LRK53_RS05785 0.46 -0.4
1,344,544 + LRK53_RS05785 0.46 +3.2
1,344,545 - LRK53_RS05785 0.47 -0.4
1,344,748 + LRK53_RS05785 0.72 -0.4
1,344,748 + LRK53_RS05785 0.72 -0.1
1,344,749 - LRK53_RS05785 0.72 -1.1
1,344,749 - LRK53_RS05785 0.72 -0.7
1,344,964 + -0.2
1,344,964 + +0.5
1,344,965 - -1.8
1,344,987 - -1.1
1,345,081 + LRK53_RS05790 0.19 +0.4
1,345,081 + LRK53_RS05790 0.19 +0.6
1,345,081 + LRK53_RS05790 0.19 -0.4
1,345,081 + LRK53_RS05790 0.19 -0.4
1,345,081 + LRK53_RS05790 0.19 -1.2
1,345,081 + LRK53_RS05790 0.19 +0.7
1,345,081 + LRK53_RS05790 0.19 -0.5
1,345,081 + LRK53_RS05790 0.19 -0.8
1,345,081 + LRK53_RS05790 0.19 -0.8
1,345,081 + LRK53_RS05790 0.19 -0.7
1,345,081 + LRK53_RS05790 0.19 +0.4
1,345,081 + LRK53_RS05790 0.19 +0.9
1,345,081 + LRK53_RS05790 0.19 -0.2
1,345,082 - LRK53_RS05790 0.19 +0.9
1,345,082 - LRK53_RS05790 0.19 -0.2
1,345,082 - LRK53_RS05790 0.19 -0.3
1,345,082 - LRK53_RS05790 0.19 -0.4
1,345,082 - LRK53_RS05790 0.19 +0.1
1,345,082 - LRK53_RS05790 0.19 -0.8
1,345,186 + LRK53_RS05790 0.38 -0.1
1,345,187 - LRK53_RS05790 0.38 +1.4
1,345,324 + LRK53_RS05790 0.62 +0.5
1,345,324 + LRK53_RS05790 0.62 +0.6
1,345,324 + LRK53_RS05790 0.62 -0.6
1,345,324 + LRK53_RS05790 0.62 -1.3
1,345,324 + LRK53_RS05790 0.62 -1.9
1,345,324 + LRK53_RS05790 0.62 -0.6
1,345,324 + LRK53_RS05790 0.62 -0.1
1,345,324 + LRK53_RS05790 0.62 -1.1
1,345,324 + LRK53_RS05790 0.62 +0.4
1,345,324 + LRK53_RS05790 0.62 +1.0
1,345,325 - LRK53_RS05790 0.63 +0.1
1,345,325 - LRK53_RS05790 0.63 -0.4
1,345,325 - LRK53_RS05790 0.63 -0.7
1,345,325 - LRK53_RS05790 0.63 -0.6
1,345,325 - LRK53_RS05790 0.63 -0.2
1,345,325 - LRK53_RS05790 0.63 +0.2
1,345,325 - LRK53_RS05790 0.63 +0.1
1,345,325 - LRK53_RS05790 0.63 -1.4
1,345,325 - LRK53_RS05790 0.63 -0.2
1,345,325 - LRK53_RS05790 0.63 +0.3
1,345,325 - LRK53_RS05790 0.63 +0.9
1,345,504 + +0.0
1,345,504 + -0.7
1,345,505 - -0.8
1,345,550 + -0.2
1,345,551 - -0.9
1,345,551 - +0.5
1,345,620 + LRK53_RS05795 0.11 -0.4
1,345,620 + LRK53_RS05795 0.11 -0.4
1,345,620 + LRK53_RS05795 0.11 -0.6
1,345,620 + LRK53_RS05795 0.11 -1.0
1,345,620 + LRK53_RS05795 0.11 -0.9
1,345,621 - LRK53_RS05795 0.11 -1.9
1,345,621 - LRK53_RS05795 0.11 -1.3
1,345,621 - LRK53_RS05795 0.11 -0.4
1,345,795 - LRK53_RS05795 0.32 -0.1
1,345,821 - LRK53_RS05795 0.35 +1.2
1,345,821 - LRK53_RS05795 0.35 -0.1
1,345,929 + LRK53_RS05795 0.49 -0.4
1,345,929 + LRK53_RS05795 0.49 -0.5
1,345,929 + LRK53_RS05795 0.49 -1.5
1,345,929 + LRK53_RS05795 0.49 -0.9
1,345,929 + LRK53_RS05795 0.49 -0.6
1,345,929 + LRK53_RS05795 0.49 -0.5
1,345,929 + LRK53_RS05795 0.49 -0.4
1,345,929 + LRK53_RS05795 0.49 -1.3
1,345,929 + LRK53_RS05795 0.49 -1.9
1,345,929 + LRK53_RS05795 0.49 -0.9
1,345,929 + LRK53_RS05795 0.49 -0.0
1,345,929 + LRK53_RS05795 0.49 +0.2
1,345,929 + LRK53_RS05795 0.49 +0.0
1,345,929 + LRK53_RS05795 0.49 +0.2
1,345,930 - LRK53_RS05795 0.49 -1.3
1,345,930 - LRK53_RS05795 0.49 -0.8
1,345,930 - LRK53_RS05795 0.49 -0.5
1,345,930 - LRK53_RS05795 0.49 -1.3
1,345,930 - LRK53_RS05795 0.49 -1.1
1,345,930 - LRK53_RS05795 0.49 -1.2
1,345,930 - LRK53_RS05795 0.49 +0.1
1,345,930 - LRK53_RS05795 0.49 +2.2
1,345,930 - LRK53_RS05795 0.49 -0.7
1,345,930 - LRK53_RS05795 0.49 -1.3
1,345,930 - LRK53_RS05795 0.49 +1.0
1,345,930 - LRK53_RS05795 0.49 -0.6
1,345,930 - LRK53_RS05795 0.49 -0.2
1,345,930 - LRK53_RS05795 0.49 +0.5
1,345,930 - LRK53_RS05795 0.49 -2.6
1,345,930 - LRK53_RS05795 0.49 +0.4

Or see this region's nucleotide sequence