Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05470

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05460 and LRK53_RS05465 are separated by 70 nucleotidesLRK53_RS05465 and LRK53_RS05470 are separated by 89 nucleotidesLRK53_RS05470 and LRK53_RS05475 are separated by 137 nucleotides LRK53_RS05460: LRK53_RS05460 - aldo/keto reductase, at 1,270,885 to 1,271,859 _RS05460 LRK53_RS05465: LRK53_RS05465 - hemin uptake protein HemP, at 1,271,930 to 1,272,130 _RS05465 LRK53_RS05470: LRK53_RS05470 - hypothetical protein, at 1,272,220 to 1,272,795 _RS05470 LRK53_RS05475: LRK53_RS05475 - FAD-dependent oxidoreductase, at 1,272,933 to 1,275,050 _RS05475 Position (kb) 1272 1273Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1271.236 kb on + strand, within LRK53_RS05460at 1271.236 kb on + strand, within LRK53_RS05460at 1271.236 kb on + strand, within LRK53_RS05460at 1271.236 kb on + strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.335 kb on + strand, within LRK53_RS05460at 1271.335 kb on + strand, within LRK53_RS05460at 1271.336 kb on - strand, within LRK53_RS05460at 1271.336 kb on - strand, within LRK53_RS05460at 1271.336 kb on - strand, within LRK53_RS05460at 1271.408 kb on - strand, within LRK53_RS05460at 1271.434 kb on + strand, within LRK53_RS05460at 1271.434 kb on + strand, within LRK53_RS05460at 1271.434 kb on + strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.470 kb on + strand, within LRK53_RS05460at 1271.470 kb on + strand, within LRK53_RS05460at 1271.471 kb on - strand, within LRK53_RS05460at 1271.471 kb on - strand, within LRK53_RS05460at 1271.471 kb on - strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.492 kb on - strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.549 kb on - strand, within LRK53_RS05460at 1271.549 kb on - strand, within LRK53_RS05460at 1271.549 kb on - strand, within LRK53_RS05460at 1271.549 kb on - strand, within LRK53_RS05460at 1272.046 kb on + strand, within LRK53_RS05465at 1272.046 kb on + strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.060 kb on + strand, within LRK53_RS05465at 1272.083 kb on + strand, within LRK53_RS05465at 1272.083 kb on + strand, within LRK53_RS05465at 1272.084 kb on - strand, within LRK53_RS05465at 1272.084 kb on - strand, within LRK53_RS05465at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.559 kb on + strand, within LRK53_RS05470at 1272.559 kb on + strand, within LRK53_RS05470at 1272.560 kb on - strand, within LRK53_RS05470at 1272.560 kb on - strand, within LRK53_RS05470at 1272.793 kb on + strandat 1272.794 kb on - strandat 1272.906 kb on + strandat 1272.906 kb on + strandat 1272.907 kb on - strandat 1272.907 kb on - strandat 1272.907 kb on - strandat 1272.907 kb on - strandat 1272.907 kb on - strandat 1273.078 kb on + strandat 1273.079 kb on - strandat 1273.416 kb on + strand, within LRK53_RS05475at 1273.416 kb on + strand, within LRK53_RS05475at 1273.416 kb on + strand, within LRK53_RS05475at 1273.416 kb on + strand, within LRK53_RS05475at 1273.416 kb on + strand, within LRK53_RS05475at 1273.417 kb on - strand, within LRK53_RS05475at 1273.417 kb on - strand, within LRK53_RS05475at 1273.465 kb on + strand, within LRK53_RS05475at 1273.465 kb on + strand, within LRK53_RS05475at 1273.465 kb on + strand, within LRK53_RS05475at 1273.465 kb on + strand, within LRK53_RS05475at 1273.465 kb on + strand, within LRK53_RS05475at 1273.465 kb on + strand, within LRK53_RS05475at 1273.466 kb on - strand, within LRK53_RS05475at 1273.466 kb on - strand, within LRK53_RS05475at 1273.466 kb on - strand, within LRK53_RS05475at 1273.466 kb on - strand, within LRK53_RS05475at 1273.466 kb on - strand, within LRK53_RS05475at 1273.468 kb on + strand, within LRK53_RS05475at 1273.469 kb on - strand, within LRK53_RS05475at 1273.469 kb on - strand, within LRK53_RS05475at 1273.483 kb on + strand, within LRK53_RS05475at 1273.483 kb on + strand, within LRK53_RS05475at 1273.483 kb on + strand, within LRK53_RS05475at 1273.483 kb on + strand, within LRK53_RS05475at 1273.484 kb on - strand, within LRK53_RS05475at 1273.484 kb on - strand, within LRK53_RS05475at 1273.484 kb on - strand, within LRK53_RS05475at 1273.484 kb on - strand, within LRK53_RS05475at 1273.484 kb on - strand, within LRK53_RS05475at 1273.484 kb on - strand, within LRK53_RS05475at 1273.491 kb on + strand, within LRK53_RS05475at 1273.491 kb on + strand, within LRK53_RS05475at 1273.491 kb on + strand, within LRK53_RS05475at 1273.491 kb on + strand, within LRK53_RS05475at 1273.491 kb on + strand, within LRK53_RS05475at 1273.492 kb on - strand, within LRK53_RS05475at 1273.685 kb on - strand, within LRK53_RS05475at 1273.685 kb on - strand, within LRK53_RS05475at 1273.692 kb on + strand, within LRK53_RS05475at 1273.692 kb on + strand, within LRK53_RS05475at 1273.692 kb on + strand, within LRK53_RS05475at 1273.692 kb on + strand, within LRK53_RS05475at 1273.692 kb on + strand, within LRK53_RS05475at 1273.692 kb on + strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.693 kb on - strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.694 kb on + strand, within LRK53_RS05475at 1273.695 kb on - strand, within LRK53_RS05475at 1273.695 kb on - strand, within LRK53_RS05475at 1273.695 kb on - strand, within LRK53_RS05475at 1273.695 kb on - strand, within LRK53_RS05475at 1273.695 kb on - strand, within LRK53_RS05475

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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1,271,236 + LRK53_RS05460 0.36 +3.1
1,271,236 + LRK53_RS05460 0.36 -1.5
1,271,236 + LRK53_RS05460 0.36 +0.2
1,271,236 + LRK53_RS05460 0.36 -0.3
1,271,237 - LRK53_RS05460 0.36 +0.4
1,271,237 - LRK53_RS05460 0.36 -1.6
1,271,237 - LRK53_RS05460 0.36 +0.4
1,271,237 - LRK53_RS05460 0.36 -1.7
1,271,237 - LRK53_RS05460 0.36 +0.0
1,271,237 - LRK53_RS05460 0.36 -0.6
1,271,248 + LRK53_RS05460 0.37 +0.4
1,271,248 + LRK53_RS05460 0.37 -1.1
1,271,248 + LRK53_RS05460 0.37 +1.4
1,271,248 + LRK53_RS05460 0.37 -1.5
1,271,248 + LRK53_RS05460 0.37 +2.3
1,271,249 - LRK53_RS05460 0.37 +0.2
1,271,249 - LRK53_RS05460 0.37 -0.7
1,271,249 - LRK53_RS05460 0.37 +0.2
1,271,249 - LRK53_RS05460 0.37 +1.5
1,271,249 - LRK53_RS05460 0.37 +0.3
1,271,249 - LRK53_RS05460 0.37 -1.9
1,271,249 - LRK53_RS05460 0.37 -0.3
1,271,249 - LRK53_RS05460 0.37 +0.5
1,271,335 + LRK53_RS05460 0.46 -0.3
1,271,335 + LRK53_RS05460 0.46 -1.8
1,271,336 - LRK53_RS05460 0.46 +1.4
1,271,336 - LRK53_RS05460 0.46 -1.2
1,271,336 - LRK53_RS05460 0.46 -1.4
1,271,408 - LRK53_RS05460 0.54 -1.9
1,271,434 + LRK53_RS05460 0.56 +0.4
1,271,434 + LRK53_RS05460 0.56 -0.5
1,271,434 + LRK53_RS05460 0.56 +0.2
1,271,435 - LRK53_RS05460 0.56 -0.6
1,271,435 - LRK53_RS05460 0.56 +0.7
1,271,435 - LRK53_RS05460 0.56 -0.9
1,271,435 - LRK53_RS05460 0.56 -0.6
1,271,435 - LRK53_RS05460 0.56 -0.7
1,271,470 + LRK53_RS05460 0.60 -0.7
1,271,470 + LRK53_RS05460 0.60 -0.7
1,271,471 - LRK53_RS05460 0.60 +0.4
1,271,471 - LRK53_RS05460 0.60 -0.1
1,271,471 - LRK53_RS05460 0.60 -0.8
1,271,482 + LRK53_RS05460 0.61 -0.2
1,271,482 + LRK53_RS05460 0.61 -1.3
1,271,482 + LRK53_RS05460 0.61 -0.4
1,271,482 + LRK53_RS05460 0.61 +0.7
1,271,482 + LRK53_RS05460 0.61 -2.2
1,271,482 + LRK53_RS05460 0.61 -0.4
1,271,483 - LRK53_RS05460 0.61 -1.7
1,271,483 - LRK53_RS05460 0.61 -0.4
1,271,483 - LRK53_RS05460 0.61 -0.7
1,271,483 - LRK53_RS05460 0.61 -0.7
1,271,483 - LRK53_RS05460 0.61 -0.4
1,271,483 - LRK53_RS05460 0.61 -0.3
1,271,483 - LRK53_RS05460 0.61 -0.8
1,271,483 - LRK53_RS05460 0.61 -0.6
1,271,492 - LRK53_RS05460 0.62 +0.9
1,271,548 + LRK53_RS05460 0.68 +0.9
1,271,548 + LRK53_RS05460 0.68 -1.3
1,271,548 + LRK53_RS05460 0.68 +0.2
1,271,548 + LRK53_RS05460 0.68 -1.0
1,271,548 + LRK53_RS05460 0.68 -0.0
1,271,549 - LRK53_RS05460 0.68 -0.1
1,271,549 - LRK53_RS05460 0.68 -0.5
1,271,549 - LRK53_RS05460 0.68 -0.7
1,271,549 - LRK53_RS05460 0.68 -0.1
1,272,046 + LRK53_RS05465 0.58 -0.8
1,272,046 + LRK53_RS05465 0.58 -0.6
1,272,047 - LRK53_RS05465 0.58 -1.3
1,272,047 - LRK53_RS05465 0.58 -1.1
1,272,047 - LRK53_RS05465 0.58 -0.5
1,272,047 - LRK53_RS05465 0.58 -1.6
1,272,060 + LRK53_RS05465 0.65 +0.9
1,272,083 + LRK53_RS05465 0.76 -0.6
1,272,083 + LRK53_RS05465 0.76 +0.9
1,272,084 - LRK53_RS05465 0.77 -0.9
1,272,084 - LRK53_RS05465 0.77 -0.4
1,272,352 + LRK53_RS05470 0.23 -0.1
1,272,352 + LRK53_RS05470 0.23 -0.8
1,272,352 + LRK53_RS05470 0.23 -2.1
1,272,352 + LRK53_RS05470 0.23 -1.2
1,272,352 + LRK53_RS05470 0.23 -1.6
1,272,352 + LRK53_RS05470 0.23 -0.7
1,272,352 + LRK53_RS05470 0.23 -1.9
1,272,352 + LRK53_RS05470 0.23 +1.2
1,272,352 + LRK53_RS05470 0.23 +0.2
1,272,352 + LRK53_RS05470 0.23 -0.6
1,272,352 + LRK53_RS05470 0.23 -0.6
1,272,352 + LRK53_RS05470 0.23 +1.1
1,272,352 + LRK53_RS05470 0.23 -1.7
1,272,352 + LRK53_RS05470 0.23 -1.3
1,272,352 + LRK53_RS05470 0.23 +0.5
1,272,352 + LRK53_RS05470 0.23 -0.5
1,272,353 - LRK53_RS05470 0.23 -0.4
1,272,353 - LRK53_RS05470 0.23 -0.6
1,272,353 - LRK53_RS05470 0.23 +0.8
1,272,353 - LRK53_RS05470 0.23 -0.1
1,272,353 - LRK53_RS05470 0.23 +1.2
1,272,353 - LRK53_RS05470 0.23 -0.4
1,272,559 + LRK53_RS05470 0.59 +0.4
1,272,559 + LRK53_RS05470 0.59 +1.4
1,272,560 - LRK53_RS05470 0.59 -0.9
1,272,560 - LRK53_RS05470 0.59 -0.7
1,272,793 + +2.4
1,272,794 - +1.4
1,272,906 + +0.4
1,272,906 + +1.3
1,272,907 - +0.0
1,272,907 - -0.1
1,272,907 - -1.2
1,272,907 - +0.2
1,272,907 - -0.6
1,273,078 + -0.6
1,273,079 - -0.4
1,273,416 + LRK53_RS05475 0.23 -1.7
1,273,416 + LRK53_RS05475 0.23 -0.1
1,273,416 + LRK53_RS05475 0.23 -0.1
1,273,416 + LRK53_RS05475 0.23 -0.5
1,273,416 + LRK53_RS05475 0.23 -1.5
1,273,417 - LRK53_RS05475 0.23 +0.9
1,273,417 - LRK53_RS05475 0.23 +1.6
1,273,465 + LRK53_RS05475 0.25 -1.3
1,273,465 + LRK53_RS05475 0.25 +0.8
1,273,465 + LRK53_RS05475 0.25 +1.1
1,273,465 + LRK53_RS05475 0.25 +0.8
1,273,465 + LRK53_RS05475 0.25 -0.1
1,273,465 + LRK53_RS05475 0.25 -0.4
1,273,466 - LRK53_RS05475 0.25 +0.8
1,273,466 - LRK53_RS05475 0.25 -0.5
1,273,466 - LRK53_RS05475 0.25 -0.5
1,273,466 - LRK53_RS05475 0.25 +0.4
1,273,466 - LRK53_RS05475 0.25 -1.4
1,273,468 + LRK53_RS05475 0.25 -1.2
1,273,469 - LRK53_RS05475 0.25 +1.4
1,273,469 - LRK53_RS05475 0.25 -1.4
1,273,483 + LRK53_RS05475 0.26 -0.8
1,273,483 + LRK53_RS05475 0.26 -0.4
1,273,483 + LRK53_RS05475 0.26 -0.4
1,273,483 + LRK53_RS05475 0.26 -0.5
1,273,484 - LRK53_RS05475 0.26 +2.0
1,273,484 - LRK53_RS05475 0.26 -0.6
1,273,484 - LRK53_RS05475 0.26 -0.7
1,273,484 - LRK53_RS05475 0.26 -0.8
1,273,484 - LRK53_RS05475 0.26 -1.8
1,273,484 - LRK53_RS05475 0.26 +0.0
1,273,491 + LRK53_RS05475 0.26 -1.5
1,273,491 + LRK53_RS05475 0.26 +0.2
1,273,491 + LRK53_RS05475 0.26 +0.8
1,273,491 + LRK53_RS05475 0.26 +0.6
1,273,491 + LRK53_RS05475 0.26 -1.6
1,273,492 - LRK53_RS05475 0.26 -0.1
1,273,685 - LRK53_RS05475 0.36 -1.3
1,273,685 - LRK53_RS05475 0.36 -0.1
1,273,692 + LRK53_RS05475 0.36 +0.4
1,273,692 + LRK53_RS05475 0.36 -1.4
1,273,692 + LRK53_RS05475 0.36 -0.9
1,273,692 + LRK53_RS05475 0.36 +0.8
1,273,692 + LRK53_RS05475 0.36 -0.8
1,273,692 + LRK53_RS05475 0.36 -0.4
1,273,693 - LRK53_RS05475 0.36 -1.0
1,273,693 - LRK53_RS05475 0.36 -0.7
1,273,693 - LRK53_RS05475 0.36 -1.6
1,273,693 - LRK53_RS05475 0.36 -1.9
1,273,693 - LRK53_RS05475 0.36 +0.2
1,273,693 - LRK53_RS05475 0.36 -0.3
1,273,693 - LRK53_RS05475 0.36 +2.1
1,273,693 - LRK53_RS05475 0.36 -0.9
1,273,693 - LRK53_RS05475 0.36 +0.2
1,273,693 - LRK53_RS05475 0.36 -1.8
1,273,693 - LRK53_RS05475 0.36 -2.2
1,273,693 - LRK53_RS05475 0.36 -0.6
1,273,694 + LRK53_RS05475 0.36 +0.1
1,273,694 + LRK53_RS05475 0.36 +0.5
1,273,694 + LRK53_RS05475 0.36 -0.6
1,273,694 + LRK53_RS05475 0.36 +0.3
1,273,694 + LRK53_RS05475 0.36 -1.9
1,273,694 + LRK53_RS05475 0.36 +0.8
1,273,694 + LRK53_RS05475 0.36 -2.2
1,273,694 + LRK53_RS05475 0.36 +1.0
1,273,694 + LRK53_RS05475 0.36 -0.2
1,273,694 + LRK53_RS05475 0.36 +0.0
1,273,694 + LRK53_RS05475 0.36 -0.8
1,273,695 - LRK53_RS05475 0.36 -0.8
1,273,695 - LRK53_RS05475 0.36 -0.6
1,273,695 - LRK53_RS05475 0.36 -2.4
1,273,695 - LRK53_RS05475 0.36 +2.1
1,273,695 - LRK53_RS05475 0.36 -1.9

Or see this region's nucleotide sequence