Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05435

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05425 and LRK53_RS05430 overlap by 1 nucleotidesLRK53_RS05430 and LRK53_RS05435 overlap by 1 nucleotidesLRK53_RS05435 and LRK53_RS05440 are separated by 20 nucleotidesLRK53_RS05440 and LRK53_RS05445 overlap by 4 nucleotides LRK53_RS05425: LRK53_RS05425 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,265,688 to 1,266,149 _RS05425 LRK53_RS05430: LRK53_RS05430 - transcription antitermination factor NusB, at 1,266,149 to 1,266,595 _RS05430 LRK53_RS05435: LRK53_RS05435 - GNAT family N-acetyltransferase, at 1,266,595 to 1,267,137 _RS05435 LRK53_RS05440: LRK53_RS05440 - thiamine-phosphate kinase, at 1,267,158 to 1,268,126 _RS05440 LRK53_RS05445: LRK53_RS05445 - phosphatidylglycerophosphatase A, at 1,268,123 to 1,268,647 _RS05445 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -2 -1 0 1 2at 1265.640 kb on + strandat 1265.656 kb on + strandat 1265.656 kb on + strandat 1266.847 kb on + strand, within LRK53_RS05435at 1266.847 kb on + strand, within LRK53_RS05435at 1266.847 kb on + strand, within LRK53_RS05435at 1266.847 kb on + strand, within LRK53_RS05435at 1267.102 kb on + strandat 1267.102 kb on + strandat 1267.102 kb on + strandat 1267.102 kb on + strandat 1267.102 kb on + strandat 1267.102 kb on + strandat 1267.102 kb on + strandat 1267.102 kb on + strandat 1267.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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1,265,640 + +0.4
1,265,656 + +2.5
1,265,656 + +1.0
1,266,847 + LRK53_RS05435 0.46 -1.8
1,266,847 + LRK53_RS05435 0.46 +0.4
1,266,847 + LRK53_RS05435 0.46 -1.3
1,266,847 + LRK53_RS05435 0.46 -1.1
1,267,102 + -1.4
1,267,102 + +0.1
1,267,102 + +0.6
1,267,102 + -1.8
1,267,102 + -0.1
1,267,102 + +0.3
1,267,102 + -2.2
1,267,102 + -1.6
1,267,103 - +0.2

Or see this region's nucleotide sequence