Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04325

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Aluminum chloride 1mM
1,004,905	-		LRK53_RS04320	0.78	-0.9
1,004,949	+		LRK53_RS04320	0.80	-1.2
1,004,949	+		LRK53_RS04320	0.80	+1.1
1,004,949	+		LRK53_RS04320	0.80	+0.5
1,004,949	+		LRK53_RS04320	0.80	-0.0
1,004,949	+		LRK53_RS04320	0.80	-1.1
1,004,949	+		LRK53_RS04320	0.80	+2.0
1,004,949	+		LRK53_RS04320	0.80	+1.9
1,004,949	+		LRK53_RS04320	0.80	-1.5
1,004,950	-		LRK53_RS04320	0.80	-0.0
1,004,950	-		LRK53_RS04320	0.80	-0.8
1,004,950	-		LRK53_RS04320	0.80	+0.2
1,004,950	-		LRK53_RS04320	0.80	-0.5
1,004,950	-		LRK53_RS04320	0.80	+0.8
1,004,950	-		LRK53_RS04320	0.80	-1.2
1,004,950	-		LRK53_RS04320	0.80	+0.9
1,004,950	-		LRK53_RS04320	0.80	+0.2
1,004,950	-		LRK53_RS04320	0.80	+0.2
1,005,235	-				+0.2
1,005,235	-				-0.8
1,005,347	+				-2.0
1,005,347	+				-2.6
1,005,347	+				-1.3
1,005,347	+				-0.0
1,005,347	+				-1.4
1,005,347	+				+1.2
1,005,347	+				+0.8
1,005,347	+				+0.9
1,005,347	+				-1.2
1,005,347	+				+0.6
1,005,347	+				-2.1
1,005,347	+				-0.8
1,005,348	-				-1.1
1,005,348	-				-0.5
1,005,348	-				-0.7
1,005,348	-				-0.9
1,005,348	-				-1.5
1,005,348	-				+0.6
1,005,348	-				-2.1
1,005,348	-				+0.1
1,005,348	-				-1.8
1,005,348	-				+2.0
1,005,348	-				-0.5
1,005,348	-				+0.9
1,005,348	-				-1.4
1,005,348	-				+0.2
1,005,348	-				-1.0
1,005,348	-				+0.5
1,005,348	-				-1.0
1,005,348	-				-1.3
1,005,367	+				-0.2
1,005,367	+				+0.1
1,005,367	+				+1.1
1,005,367	+				-1.4
1,005,367	+				-0.7
1,005,367	+				-0.2
1,005,367	+				-1.7
1,005,367	+				-1.1
1,005,367	+				-2.1
1,005,367	+				+0.9
1,005,367	+				+0.5
1,005,367	+				-1.5
1,005,367	+				+0.5
1,005,367	+				-1.6
1,005,367	+				+1.0
1,005,367	+				-0.5
1,005,368	-				-0.2
1,005,368	-				-0.3
1,005,368	-				+0.8
1,005,368	-				+0.1
1,005,576	+				-1.7
1,005,577	-				-1.8
1,005,577	-				-0.8
1,005,583	-				-1.0
1,005,583	-				-1.3
1,005,590	-				-1.5
1,005,609	+				-0.9
1,005,609	+				+1.2
1,005,609	+				+1.5
1,005,609	+				+1.1
1,005,610	-				-0.7
1,005,610	-				-1.2
1,005,610	-				-1.2
1,005,610	-				+0.0
1,005,691	+		LRK53_RS04325	0.28	-0.8
1,005,691	+		LRK53_RS04325	0.28	-2.7
1,005,691	+		LRK53_RS04325	0.28	-1.3
1,005,691	+		LRK53_RS04325	0.28	-1.1
1,005,691	+		LRK53_RS04325	0.28	-0.0
1,005,691	+		LRK53_RS04325	0.28	-0.0
1,005,691	+		LRK53_RS04325	0.28	-0.8
1,005,692	-		LRK53_RS04325	0.29	-0.4
1,005,692	-		LRK53_RS04325	0.29	-0.8
1,005,692	-		LRK53_RS04325	0.29	-1.4
1,005,748	-		LRK53_RS04325	0.48	-2.6
1,005,748	-		LRK53_RS04325	0.48	-0.3
1,005,897	+				-1.3
1,005,897	+				-1.3
1,005,897	+				-0.0
1,005,897	+				+0.2
1,005,897	+				-0.5
1,005,897	+				+1.0
1,005,897	+				-1.0
1,005,897	+				-0.9
1,005,897	+				-0.5
1,005,897	+				-0.2
1,005,897	+				-2.5
1,005,897	+				-0.6
1,005,897	+				-1.6
1,005,897	+				-0.2
1,005,897	+				-0.8
1,005,897	+				-1.8
1,005,897	+				-3.0
1,005,897	+				+0.8
1,005,897	+				-0.0
1,005,897	+				-0.4
1,005,897	+				+0.0
1,005,897	+				+0.1
1,005,897	+				-1.3
1,005,897	+				-0.2
1,005,897	+				-1.0
1,005,897	+				-1.2
1,005,897	+				-0.5
1,005,898	-				-1.3
1,005,898	-				-1.2
1,005,898	-				-0.7
1,005,898	-				-0.2
1,005,898	-				-0.9
1,005,898	-				+0.1
1,005,898	-				-1.4
1,005,898	-				+0.8
1,005,898	-				+0.3
1,005,898	-				-1.4
1,005,898	-				-0.6
1,005,898	-				-2.5
1,005,898	-				+0.1
1,005,898	-				+1.8
1,005,898	-				+0.0
1,005,898	-				-1.0
1,005,898	-				-3.0
1,005,898	-				+0.5
1,005,898	-				-0.0
1,005,898	-				-0.2
1,005,898	-				+0.5
1,005,898	-				+1.8
1,005,898	-				-1.9
1,005,898	-				+0.5
1,005,898	-				-1.1
1,005,898	-				-0.7
1,005,898	-				-0.5
1,005,898	-				-0.9
1,005,898	-				-0.2
1,005,898	-				+0.3
1,005,898	-				-0.7
1,005,900	-				+1.3
1,005,900	-				-1.3
1,005,900	-				-2.1
1,005,951	+		LRK53_RS04330	0.36	-2.3
1,005,951	+		LRK53_RS04330	0.36	+1.2
1,005,951	+		LRK53_RS04330	0.36	-2.9
1,005,951	+		LRK53_RS04330	0.36	-2.6
1,005,951	+		LRK53_RS04330	0.36	-0.3
1,005,951	+		LRK53_RS04330	0.36	-2.1
1,005,951	+		LRK53_RS04330	0.36	+0.9
1,005,951	+		LRK53_RS04330	0.36	-0.3
1,005,951	+		LRK53_RS04330	0.36	-0.0
1,005,951	+		LRK53_RS04330	0.36	-0.2
1,005,951	+		LRK53_RS04330	0.36	-0.2
1,005,951	+		LRK53_RS04330	0.36	-1.2
1,005,951	+		LRK53_RS04330	0.36	+0.3
1,005,951	+		LRK53_RS04330	0.36	-1.2
1,005,952	-		LRK53_RS04330	0.36	+1.0
1,005,952	-		LRK53_RS04330	0.36	-2.1
1,005,952	-		LRK53_RS04330	0.36	-0.5
1,005,952	-		LRK53_RS04330	0.36	+0.7
1,005,952	-		LRK53_RS04330	0.36	-0.2
1,005,952	-		LRK53_RS04330	0.36	-0.1
1,005,952	-		LRK53_RS04330	0.36	-0.5
1,005,952	-		LRK53_RS04330	0.36	-0.4
1,005,952	-		LRK53_RS04330	0.36	+0.0
1,005,990	+		LRK53_RS04330	0.59	-2.7
1,005,990	+		LRK53_RS04330	0.59	-3.0
1,005,990	+		LRK53_RS04330	0.59	-0.4
1,005,990	+		LRK53_RS04330	0.59	-2.7
1,005,990	+		LRK53_RS04330	0.59	-0.5
1,005,990	+		LRK53_RS04330	0.59	-1.9
1,005,990	+		LRK53_RS04330	0.59	+1.2
1,005,990	+		LRK53_RS04330	0.59	+0.7
1,005,990	+		LRK53_RS04330	0.59	-0.0
1,005,990	+		LRK53_RS04330	0.59	-0.5
1,005,990	+		LRK53_RS04330	0.59	+2.3
1,005,990	+		LRK53_RS04330	0.59	+0.0
1,005,990	+		LRK53_RS04330	0.59	+0.8
1,005,990	+		LRK53_RS04330	0.59	-0.4
1,005,990	+		LRK53_RS04330	0.59	+0.4
1,005,990	+		LRK53_RS04330	0.59	+0.8
1,005,990	+		LRK53_RS04330	0.59	-2.0
1,005,990	+		LRK53_RS04330	0.59	-0.5
1,005,990	+		LRK53_RS04330	0.59	-0.8
1,005,991	-		LRK53_RS04330	0.60	+0.7
1,005,991	-		LRK53_RS04330	0.60	-0.5
1,005,991	-		LRK53_RS04330	0.60	-3.6
1,005,991	-		LRK53_RS04330	0.60	+0.1
1,005,991	-		LRK53_RS04330	0.60	+0.2
1,005,991	-		LRK53_RS04330	0.60	-0.3
1,005,991	-		LRK53_RS04330	0.60	-1.0
1,005,991	-		LRK53_RS04330	0.60	-2.2
1,005,991	-		LRK53_RS04330	0.60	+0.7
1,005,991	-		LRK53_RS04330	0.60	+1.2
1,005,991	-		LRK53_RS04330	0.60	-2.0
1,005,991	-		LRK53_RS04330	0.60	+0.2
1,006,029	+		LRK53_RS04330	0.82	+0.7
1,006,030	-		LRK53_RS04330	0.83	-0.2
1,006,064	+				+0.2
1,006,064	+				-2.0
1,006,064	+				+1.3
1,006,064	+				+0.4
1,006,064	+				+0.2
1,006,064	+				-1.1
1,006,064	+				-0.1
1,006,064	+				+1.1
1,006,064	+				-0.9
1,006,064	+				+1.2
1,006,064	+				-0.3
1,006,064	+				-1.7
1,006,064	+				-1.9
1,006,064	+				-0.3
1,006,064	+				-0.5
1,006,064	+				-0.9
1,006,064	+				+0.2
1,006,064	+				-0.4
1,006,065	-				-0.6
1,006,065	-				+0.1
1,006,065	-				-0.9
1,006,065	-				-2.0
1,006,065	-				+0.1
1,006,065	-				-0.1
1,006,065	-				-1.2
1,006,065	-				-2.8
1,006,065	-				-0.0
1,006,065	-				-0.4
1,006,065	-				-2.0
1,006,065	-				+0.6
1,006,090	+				+1.8
1,006,090	+				-0.3
1,006,090	+				+1.0
1,006,090	+				-1.4
1,006,090	+				+0.8
1,006,091	-				-0.9
1,006,091	-				+1.0
1,006,091	-				+0.6
1,006,091	-				-2.7
1,006,106	+				-2.0
1,006,106	+				+0.8
1,006,106	+				-0.7
1,006,106	+				-1.3
1,006,106	+				+0.5
1,006,106	+				-1.9
1,006,106	+				-0.0
1,006,106	+				-2.3
1,006,106	+				+1.0
1,006,107	-				-0.5
1,006,107	-				-1.4
1,006,107	-				-0.6
1,006,107	-				-1.3
1,006,107	-				-1.6
1,006,107	-				-1.9
1,006,107	-				-2.7
1,006,107	-				-0.3
1,006,107	-				+0.8
1,006,107	-				-1.3
1,006,118	+				-0.7
1,006,118	+				-1.7
1,006,119	-				-2.4
1,006,119	-				-2.8
1,006,119	-				+0.6
1,006,162	+				+0.8
1,006,163	-				-0.5
1,006,163	-				-2.0
1,006,163	-				+0.2
1,006,177	+				-0.8
1,006,177	+				-0.5
1,006,177	+				-1.1
1,006,177	+				-0.4
1,006,177	+				-0.3
1,006,177	+				-1.0
1,006,178	-				-0.7
1,006,178	-				-0.2
1,006,178	-				+0.4
1,006,202	-				-1.1
1,006,202	-				-1.5
1,006,202	-				+0.5
1,006,202	-				+1.8
1,006,202	-				-0.4
1,006,202	-				-1.2
1,006,202	-				+0.4
1,006,218	+				+0.4
1,006,218	+				-0.0
1,006,218	+				+1.0
1,006,218	+				-1.7
1,006,218	+				+1.8
1,006,218	+				-1.1
1,006,218	+				-1.7
1,006,218	+				+0.9
1,006,218	+				-0.5
1,006,218	+				-1.5
1,006,218	+				-1.3
1,006,218	+				-1.4
1,006,218	+				-1.6
1,006,218	+				-0.3
1,006,218	+				-0.5
1,006,218	+				+0.5
1,006,218	+				+1.3
1,006,218	+				-0.5
1,006,218	+				+0.8
1,006,218	+				-0.7
1,006,219	-				+2.0
1,006,219	-				-1.7
1,006,219	-				-1.4
1,006,219	-				+0.2
1,006,219	-				-1.4
1,006,219	-				+0.4
1,006,219	-				-0.4
1,006,219	-				-2.7
1,006,219	-				-0.3
1,006,219	-				-3.0
1,006,219	-				-0.2
1,006,219	-				-0.2
1,006,219	-				+0.2
1,006,219	-				-0.4
1,006,219	-				-0.6
1,006,219	-				+1.8
1,006,219	-				-0.9
1,006,237	-				-2.6
1,006,256	-				-0.4
1,006,276	+				+0.3
1,006,276	+				-1.3
1,006,276	+				-0.7
1,006,277	-				-1.5
1,006,277	-				-1.1
1,006,277	-				+0.2
1,006,277	-				+0.2
1,006,277	-				-0.0
1,006,277	-				-1.5
1,006,277	-				+0.8
1,006,286	+				+0.3
1,006,286	+				-0.4
1,006,286	+				-2.1
1,006,286	+				-2.9
1,006,286	+				-1.0
1,006,286	+				+1.7
1,006,286	+				+0.5
1,006,286	+				+0.8
1,006,286	+				-0.2
1,006,286	+				-1.4
1,006,286	+				-0.4
1,006,286	+				-1.8
1,006,286	+				-0.8
1,006,286	+				-1.3
1,006,286	+				-2.1
1,006,286	+				-0.2
1,006,286	+				-0.2
1,006,286	+				-1.0
1,006,287	-				-2.4
1,006,287	-				+1.6
1,006,287	-				-2.8
1,006,287	-				+0.7
1,006,287	-				-0.9
1,006,287	-				-1.4
1,006,287	-				-0.2
1,006,287	-				+1.8
1,006,287	-				-1.2
1,006,287	-				-1.9
1,006,287	-				+1.1
1,006,287	-				-0.3
1,006,287	-				+1.1
1,006,287	-				-0.2
1,006,287	-				-1.5
1,006,287	-				+0.2
1,006,287	-				-2.1
1,006,287	-				-0.2
1,006,288	+				-0.5
1,006,288	+				-1.9
1,006,288	+				-1.7
1,006,289	-				-0.7
1,006,289	-				-1.4
1,006,289	-				+1.3
1,006,289	-				-0.2
1,006,289	-				+1.8
1,006,289	-				-0.2
1,006,327	+				+0.6
1,006,331	+				+0.5
1,006,331	+				-1.5
1,006,331	+				+0.2
1,006,331	+				-0.0
1,006,331	+				+0.9
1,006,331	+				-2.1
1,006,331	+				-1.2
1,006,331	+				-1.0
1,006,331	+				-0.4
1,006,331	+				-1.2
1,006,331	+				+0.3
1,006,331	+				+0.7
1,006,332	-				-0.3
1,006,332	-				+0.4
1,006,332	-				-0.2
1,006,332	-				-0.8
1,006,332	-				-0.7
1,006,335	+				+0.8
1,006,335	+				-1.3
1,006,335	+				+0.9
1,006,335	+				-0.9
1,006,335	+				-1.8
1,006,336	-				+0.0
1,006,336	-				-0.2
1,006,336	-				-1.9
1,006,336	-				-1.4
1,006,336	-				+0.4
1,006,336	-				-1.3
1,006,336	-				+0.6
1,006,339	+				+0.6
1,006,339	+				+2.0
1,006,339	+				-1.6
1,006,339	+				-0.0
1,006,339	+				-1.3
1,006,339	+				-0.8
1,006,340	-				-2.6
1,006,340	-				-0.3
1,006,340	-				+0.5
1,006,340	-				+0.5
1,006,340	-				-0.0
1,006,340	-				-0.3
1,006,340	-				-0.1
1,006,340	-				-2.4
1,006,340	-				-1.3
1,006,340	-				-1.3
1,006,342	+				+1.0
1,006,342	+				-0.9
1,006,342	+				-2.4
1,006,342	+				-0.3
1,006,342	+				-0.7
1,006,343	-				-0.1
1,006,343	-				-0.2
1,006,343	-				-0.2
1,006,343	-				+1.6
1,006,343	-				-0.5
1,006,343	-				-3.1
1,006,343	-				-0.2
1,006,343	-				+0.5
1,006,343	-				-0.5
1,006,346	+				-0.4
1,006,347	-				-1.7
1,006,347	-				+0.0
1,006,361	+				+0.2
1,006,361	+				-1.8
1,006,361	+				+1.6
1,006,361	+				-0.8
1,006,361	+				-0.7
1,006,361	+				-0.2
1,006,362	-				-2.0
1,006,490	+				-0.7
1,006,490	+				-1.7
1,006,490	+				+0.3
1,006,490	+				+0.6
1,006,490	+				-1.4
1,006,490	+				+0.8
1,006,490	+				+0.1
1,006,490	+				+0.8
1,006,490	+				-0.4
1,006,490	+				-0.5
1,006,490	+				-0.8
1,006,490	+				+2.1
1,006,490	+				-0.1
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1,006,490	+				-0.0
1,006,490	+				-0.2
1,006,490	+				-0.6
1,006,490	+				-0.8
1,006,491	-				-0.9
1,006,491	-				+0.8
1,006,491	-				+0.6
1,006,491	-				+1.3
1,006,491	-				-1.9
1,006,491	-				-2.6
1,006,491	-				-1.5
1,006,491	-				-1.8
1,006,491	-				-0.0
1,006,491	-				-0.7
1,006,491	-				+1.2
1,006,491	-				-0.9
1,006,491	-				-0.0
1,006,491	-				+0.5
1,006,544	+				-1.3
1,006,548	+				-0.2
1,006,548	+				-0.8
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1,006,549	-				-1.4
1,006,604	+				-0.3
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1,006,605	-				-1.0
1,006,605	-				-0.5
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1,006,614	-				-0.1
1,006,643	+				-1.4
1,006,663	+				-0.3
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1,006,663	+				-1.2
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1,006,663	+				-0.9
1,006,664	-				+0.4
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1,006,664	-				-0.5
1,006,664	-				-0.0
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1,006,664	-				-1.8
1,006,676	+				-1.5
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1,006,676	+				+0.8
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1,006,677	-				+0.2
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1,006,677	-				-1.0
1,006,677	-				+0.2
1,006,855	+				-0.5
1,006,855	+				-2.1
1,006,855	+				+1.0