Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03890 and LRK53_RS03895 overlap by 4 nucleotides LRK53_RS03895 and LRK53_RS03900 are separated by 66 nucleotides
LRK53_RS03890: LRK53_RS03890 - type II toxin-antitoxin system HipA family toxin, at 913,226 to 914,527
_RS03890
LRK53_RS03895: LRK53_RS03895 - helix-turn-helix domain-containing protein, at 914,524 to 914,841
_RS03895
LRK53_RS03900: LRK53_RS03900 - NAD(P)/FAD-dependent oxidoreductase, at 914,908 to 916,539
_RS03900
Position (kb) 914
915 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 913.554 kb on + strand, within LRK53_RS03890 at 913.554 kb on + strand, within LRK53_RS03890 at 913.554 kb on + strand, within LRK53_RS03890 at 913.555 kb on - strand, within LRK53_RS03890 at 913.555 kb on - strand, within LRK53_RS03890 at 913.555 kb on - strand, within LRK53_RS03890 at 913.555 kb on - strand, within LRK53_RS03890 at 913.555 kb on - strand, within LRK53_RS03890 at 913.555 kb on - strand, within LRK53_RS03890 at 913.555 kb on - strand, within LRK53_RS03890 at 913.555 kb on - strand, within LRK53_RS03890 at 913.666 kb on + strand, within LRK53_RS03890 at 913.666 kb on + strand, within LRK53_RS03890 at 913.666 kb on + strand, within LRK53_RS03890 at 913.667 kb on - strand, within LRK53_RS03890 at 913.667 kb on - strand, within LRK53_RS03890 at 913.667 kb on - strand, within LRK53_RS03890 at 913.667 kb on - strand, within LRK53_RS03890 at 913.667 kb on - strand, within LRK53_RS03890 at 913.667 kb on - strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.706 kb on + strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.707 kb on - strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.749 kb on + strand, within LRK53_RS03890 at 913.750 kb on - strand, within LRK53_RS03890 at 913.750 kb on - strand, within LRK53_RS03890 at 913.750 kb on - strand, within LRK53_RS03890 at 913.750 kb on - strand, within LRK53_RS03890 at 913.750 kb on - strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.799 kb on + strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.800 kb on - strand, within LRK53_RS03890 at 913.805 kb on + strand, within LRK53_RS03890 at 913.805 kb on + strand, within LRK53_RS03890 at 913.805 kb on + strand, within LRK53_RS03890 at 913.805 kb on + strand, within LRK53_RS03890 at 913.805 kb on + strand, within LRK53_RS03890 at 913.805 kb on + strand, within LRK53_RS03890 at 913.805 kb on + strand, within LRK53_RS03890 at 913.806 kb on - strand, within LRK53_RS03890 at 914.378 kb on + strand, within LRK53_RS03890 at 914.379 kb on - strand, within LRK53_RS03890 at 914.394 kb on - strand, within LRK53_RS03890 at 914.439 kb on + strand at 914.439 kb on + strand at 914.440 kb on - strand at 914.440 kb on - strand at 914.440 kb on - strand at 914.440 kb on - strand at 914.594 kb on + strand, within LRK53_RS03895 at 914.594 kb on + strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.842 kb on + strand at 914.843 kb on - strand at 914.868 kb on + strand at 914.868 kb on + strand at 914.870 kb on + strand at 914.870 kb on + strand at 914.870 kb on + strand at 914.871 kb on - strand at 914.871 kb on - strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.875 kb on - strand at 914.875 kb on - strand at 914.875 kb on - strand at 914.932 kb on + strand at 914.932 kb on + strand at 914.933 kb on - strand at 914.933 kb on - strand at 914.933 kb on - strand at 915.173 kb on + strand, within LRK53_RS03900 at 915.174 kb on - strand, within LRK53_RS03900 at 915.221 kb on + strand, within LRK53_RS03900 at 915.221 kb on + strand, within LRK53_RS03900 at 915.221 kb on + strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.299 kb on + strand, within LRK53_RS03900 at 915.300 kb on - strand, within LRK53_RS03900 at 915.300 kb on - strand, within LRK53_RS03900 at 915.300 kb on - strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.385 kb on - strand, within LRK53_RS03900 at 915.452 kb on + strand, within LRK53_RS03900 at 915.452 kb on + strand, within LRK53_RS03900 at 915.453 kb on - strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.538 kb on + strand, within LRK53_RS03900 at 915.538 kb on + strand, within LRK53_RS03900 at 915.538 kb on + strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.575 kb on + strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.720 kb on + strand, within LRK53_RS03900 at 915.720 kb on + strand, within LRK53_RS03900 at 915.721 kb on - strand, within LRK53_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 913,554 + LRK53_RS03890 0.25 -1.5 913,554 + LRK53_RS03890 0.25 +0.5 913,554 + LRK53_RS03890 0.25 -0.6 913,555 - LRK53_RS03890 0.25 +0.7 913,555 - LRK53_RS03890 0.25 +0.3 913,555 - LRK53_RS03890 0.25 +0.0 913,555 - LRK53_RS03890 0.25 +0.8 913,555 - LRK53_RS03890 0.25 +0.0 913,555 - LRK53_RS03890 0.25 -0.5 913,555 - LRK53_RS03890 0.25 +0.4 913,555 - LRK53_RS03890 0.25 -1.2 913,666 + LRK53_RS03890 0.34 -1.2 913,666 + LRK53_RS03890 0.34 +0.0 913,666 + LRK53_RS03890 0.34 -0.2 913,667 - LRK53_RS03890 0.34 +0.1 913,667 - LRK53_RS03890 0.34 -0.4 913,667 - LRK53_RS03890 0.34 +0.3 913,667 - LRK53_RS03890 0.34 +1.8 913,667 - LRK53_RS03890 0.34 -0.3 913,667 - LRK53_RS03890 0.34 -1.3 913,706 + LRK53_RS03890 0.37 +0.0 913,706 + LRK53_RS03890 0.37 -1.0 913,706 + LRK53_RS03890 0.37 +0.3 913,706 + LRK53_RS03890 0.37 -0.8 913,706 + LRK53_RS03890 0.37 -0.3 913,706 + LRK53_RS03890 0.37 -2.3 913,706 + LRK53_RS03890 0.37 -1.9 913,706 + LRK53_RS03890 0.37 +0.3 913,706 + LRK53_RS03890 0.37 -1.5 913,707 - LRK53_RS03890 0.37 -1.0 913,707 - LRK53_RS03890 0.37 -1.1 913,707 - LRK53_RS03890 0.37 +0.3 913,707 - LRK53_RS03890 0.37 -1.2 913,707 - LRK53_RS03890 0.37 +0.8 913,707 - LRK53_RS03890 0.37 -2.9 913,707 - LRK53_RS03890 0.37 +1.3 913,707 - LRK53_RS03890 0.37 -0.5 913,707 - LRK53_RS03890 0.37 +1.6 913,707 - LRK53_RS03890 0.37 -1.5 913,749 + LRK53_RS03890 0.40 -1.1 913,749 + LRK53_RS03890 0.40 -0.1 913,749 + LRK53_RS03890 0.40 +0.1 913,749 + LRK53_RS03890 0.40 -0.6 913,749 + LRK53_RS03890 0.40 -1.2 913,749 + LRK53_RS03890 0.40 +0.0 913,749 + LRK53_RS03890 0.40 -0.9 913,749 + LRK53_RS03890 0.40 -1.1 913,749 + LRK53_RS03890 0.40 -0.5 913,750 - LRK53_RS03890 0.40 +1.1 913,750 - LRK53_RS03890 0.40 +0.0 913,750 - LRK53_RS03890 0.40 +0.8 913,750 - LRK53_RS03890 0.40 -0.6 913,750 - LRK53_RS03890 0.40 -1.2 913,799 + LRK53_RS03890 0.44 -1.4 913,799 + LRK53_RS03890 0.44 -0.2 913,799 + LRK53_RS03890 0.44 +0.0 913,799 + LRK53_RS03890 0.44 -0.7 913,799 + LRK53_RS03890 0.44 +0.5 913,799 + LRK53_RS03890 0.44 +0.0 913,799 + LRK53_RS03890 0.44 -0.3 913,799 + LRK53_RS03890 0.44 -0.6 913,799 + LRK53_RS03890 0.44 -1.1 913,799 + LRK53_RS03890 0.44 -1.6 913,799 + LRK53_RS03890 0.44 -0.2 913,799 + LRK53_RS03890 0.44 +0.1 913,799 + LRK53_RS03890 0.44 -0.5 913,799 + LRK53_RS03890 0.44 +1.7 913,799 + LRK53_RS03890 0.44 -1.2 913,799 + LRK53_RS03890 0.44 +0.7 913,800 - LRK53_RS03890 0.44 -1.1 913,800 - LRK53_RS03890 0.44 -0.2 913,800 - LRK53_RS03890 0.44 -1.2 913,800 - LRK53_RS03890 0.44 -0.5 913,800 - LRK53_RS03890 0.44 -0.2 913,800 - LRK53_RS03890 0.44 -0.4 913,800 - LRK53_RS03890 0.44 -0.4 913,800 - LRK53_RS03890 0.44 +0.2 913,800 - LRK53_RS03890 0.44 -1.5 913,800 - LRK53_RS03890 0.44 -0.5 913,800 - LRK53_RS03890 0.44 +0.1 913,800 - LRK53_RS03890 0.44 -0.3 913,800 - LRK53_RS03890 0.44 -0.3 913,800 - LRK53_RS03890 0.44 -3.1 913,805 + LRK53_RS03890 0.44 +0.0 913,805 + LRK53_RS03890 0.44 -1.6 913,805 + LRK53_RS03890 0.44 -2.3 913,805 + LRK53_RS03890 0.44 +0.3 913,805 + LRK53_RS03890 0.44 -0.8 913,805 + LRK53_RS03890 0.44 +0.3 913,805 + LRK53_RS03890 0.44 +2.0 913,806 - LRK53_RS03890 0.45 -1.1 914,378 + LRK53_RS03890 0.88 -2.0 914,379 - LRK53_RS03890 0.89 -0.3 914,394 - LRK53_RS03890 0.90 -0.2 914,439 + -0.6 914,439 + -1.3 914,440 - +0.5 914,440 - -2.0 914,440 - -1.9 914,440 - +0.3 914,594 + LRK53_RS03895 0.22 +1.3 914,594 + LRK53_RS03895 0.22 -2.4 914,595 - LRK53_RS03895 0.22 -0.2 914,595 - LRK53_RS03895 0.22 +0.3 914,595 - LRK53_RS03895 0.22 -1.7 914,595 - LRK53_RS03895 0.22 -0.1 914,595 - LRK53_RS03895 0.22 -1.0 914,595 - LRK53_RS03895 0.22 -0.6 914,595 - LRK53_RS03895 0.22 -2.4 914,842 + -1.0 914,843 - -3.0 914,868 + -1.5 914,868 + +3.2 914,870 + -1.7 914,870 + -2.4 914,870 + -0.7 914,871 - +0.7 914,871 - +0.2 914,874 + +2.4 914,874 + -0.2 914,874 + -0.7 914,874 + -0.8 914,874 + -0.5 914,875 - -0.9 914,875 - -1.6 914,875 - +0.4 914,932 + +0.8 914,932 + +0.6 914,933 - -0.9 914,933 - -1.5 914,933 - -0.2 915,173 + LRK53_RS03900 0.16 -1.2 915,174 - LRK53_RS03900 0.16 +0.8 915,221 + LRK53_RS03900 0.19 -0.2 915,221 + LRK53_RS03900 0.19 +0.3 915,221 + LRK53_RS03900 0.19 -1.1 915,222 - LRK53_RS03900 0.19 -0.3 915,222 - LRK53_RS03900 0.19 +0.5 915,222 - LRK53_RS03900 0.19 -0.3 915,222 - LRK53_RS03900 0.19 -1.6 915,222 - LRK53_RS03900 0.19 +0.1 915,222 - LRK53_RS03900 0.19 -0.7 915,222 - LRK53_RS03900 0.19 -1.6 915,299 + LRK53_RS03900 0.24 -2.2 915,300 - LRK53_RS03900 0.24 -1.6 915,300 - LRK53_RS03900 0.24 -0.9 915,300 - LRK53_RS03900 0.24 -0.5 915,320 + LRK53_RS03900 0.25 -1.7 915,320 + LRK53_RS03900 0.25 +0.8 915,320 + LRK53_RS03900 0.25 +0.9 915,320 + LRK53_RS03900 0.25 -0.2 915,320 + LRK53_RS03900 0.25 -0.5 915,321 - LRK53_RS03900 0.25 +0.6 915,321 - LRK53_RS03900 0.25 -0.2 915,321 - LRK53_RS03900 0.25 -2.3 915,321 - LRK53_RS03900 0.25 -2.2 915,321 - LRK53_RS03900 0.25 -3.8 915,385 - LRK53_RS03900 0.29 +0.3 915,452 + LRK53_RS03900 0.33 -0.5 915,452 + LRK53_RS03900 0.33 -0.7 915,453 - LRK53_RS03900 0.33 -0.8 915,536 + LRK53_RS03900 0.38 -0.3 915,536 + LRK53_RS03900 0.38 -1.0 915,536 + LRK53_RS03900 0.38 +0.3 915,536 + LRK53_RS03900 0.38 -0.2 915,536 + LRK53_RS03900 0.38 -2.0 915,536 + LRK53_RS03900 0.38 -0.3 915,536 + LRK53_RS03900 0.38 -0.8 915,536 + LRK53_RS03900 0.38 -1.1 915,536 + LRK53_RS03900 0.38 -1.2 915,536 + LRK53_RS03900 0.38 -0.6 915,536 + LRK53_RS03900 0.38 -0.7 915,536 + LRK53_RS03900 0.38 -1.2 915,536 + LRK53_RS03900 0.38 +1.4 915,536 + LRK53_RS03900 0.38 -2.3 915,537 - LRK53_RS03900 0.39 +0.1 915,537 - LRK53_RS03900 0.39 -1.6 915,537 - LRK53_RS03900 0.39 -0.5 915,538 + LRK53_RS03900 0.39 +0.2 915,538 + LRK53_RS03900 0.39 -2.3 915,538 + LRK53_RS03900 0.39 +0.3 915,539 - LRK53_RS03900 0.39 -0.2 915,539 - LRK53_RS03900 0.39 +0.4 915,539 - LRK53_RS03900 0.39 -0.2 915,539 - LRK53_RS03900 0.39 -0.9 915,539 - LRK53_RS03900 0.39 -0.3 915,539 - LRK53_RS03900 0.39 +0.7 915,575 + LRK53_RS03900 0.41 -1.1 915,576 - LRK53_RS03900 0.41 +1.0 915,576 - LRK53_RS03900 0.41 -0.4 915,576 - LRK53_RS03900 0.41 -0.1 915,576 - LRK53_RS03900 0.41 -0.3 915,720 + LRK53_RS03900 0.50 -0.5 915,720 + LRK53_RS03900 0.50 +0.3 915,721 - LRK53_RS03900 0.50 +0.0
Or see this region's nucleotide sequence