Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03860 and LRK53_RS03865 are separated by 6 nucleotides LRK53_RS03865 and LRK53_RS03870 are separated by 254 nucleotides
LRK53_RS03860: LRK53_RS03860 - EAL domain-containing protein, at 902,576 to 905,536
_RS03860
LRK53_RS03865: LRK53_RS03865 - DsbA family oxidoreductase, at 905,543 to 906,196
_RS03865
LRK53_RS03870: LRK53_RS03870 - DUF3375 domain-containing protein, at 906,451 to 907,914
_RS03870
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 904.652 kb on + strand, within LRK53_RS03860 at 904.652 kb on + strand, within LRK53_RS03860 at 904.652 kb on + strand, within LRK53_RS03860 at 904.652 kb on + strand, within LRK53_RS03860 at 904.652 kb on + strand, within LRK53_RS03860 at 904.652 kb on + strand, within LRK53_RS03860 at 904.652 kb on + strand, within LRK53_RS03860 at 904.653 kb on - strand, within LRK53_RS03860 at 904.653 kb on - strand, within LRK53_RS03860 at 904.653 kb on - strand, within LRK53_RS03860 at 904.653 kb on - strand, within LRK53_RS03860 at 904.653 kb on - strand, within LRK53_RS03860 at 904.688 kb on - strand, within LRK53_RS03860 at 904.697 kb on + strand, within LRK53_RS03860 at 904.698 kb on - strand, within LRK53_RS03860 at 904.727 kb on + strand, within LRK53_RS03860 at 904.728 kb on - strand, within LRK53_RS03860 at 904.826 kb on + strand, within LRK53_RS03860 at 904.826 kb on + strand, within LRK53_RS03860 at 904.826 kb on + strand, within LRK53_RS03860 at 904.826 kb on + strand, within LRK53_RS03860 at 904.827 kb on - strand, within LRK53_RS03860 at 904.827 kb on - strand, within LRK53_RS03860 at 904.827 kb on - strand, within LRK53_RS03860 at 904.827 kb on - strand, within LRK53_RS03860 at 904.875 kb on - strand, within LRK53_RS03860 at 905.111 kb on - strand, within LRK53_RS03860 at 905.249 kb on + strand at 905.249 kb on + strand at 905.250 kb on - strand at 905.264 kb on + strand at 905.264 kb on + strand at 905.264 kb on + strand at 905.264 kb on + strand at 905.474 kb on + strand at 905.474 kb on + strand at 905.474 kb on + strand at 905.475 kb on - strand at 905.475 kb on - strand at 905.544 kb on + strand at 905.805 kb on + strand, within LRK53_RS03865 at 905.805 kb on + strand, within LRK53_RS03865 at 905.805 kb on + strand, within LRK53_RS03865 at 905.806 kb on - strand, within LRK53_RS03865 at 905.806 kb on - strand, within LRK53_RS03865 at 905.806 kb on - strand, within LRK53_RS03865 at 905.892 kb on + strand, within LRK53_RS03865 at 905.892 kb on + strand, within LRK53_RS03865 at 905.893 kb on - strand, within LRK53_RS03865 at 905.893 kb on - strand, within LRK53_RS03865 at 905.893 kb on - strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.995 kb on - strand, within LRK53_RS03865 at 905.995 kb on - strand, within LRK53_RS03865 at 905.995 kb on - strand, within LRK53_RS03865 at 905.995 kb on - strand, within LRK53_RS03865 at 906.271 kb on + strand at 906.272 kb on - strand at 906.300 kb on + strand at 906.300 kb on + strand at 906.300 kb on + strand at 906.300 kb on + strand at 906.300 kb on + strand at 906.301 kb on - strand at 906.301 kb on - strand at 906.301 kb on - strand at 906.301 kb on - strand at 906.310 kb on + strand at 906.311 kb on - strand at 906.360 kb on + strand at 906.360 kb on + strand at 906.360 kb on + strand at 906.360 kb on + strand at 906.360 kb on + strand at 906.361 kb on - strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.475 kb on - strand at 906.475 kb on - strand at 906.489 kb on - strand at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.674 kb on - strand, within LRK53_RS03870 at 906.674 kb on - strand, within LRK53_RS03870 at 906.674 kb on - strand, within LRK53_RS03870 at 906.742 kb on + strand, within LRK53_RS03870 at 906.742 kb on + strand, within LRK53_RS03870 at 906.742 kb on + strand, within LRK53_RS03870 at 906.742 kb on + strand, within LRK53_RS03870 at 906.743 kb on - strand, within LRK53_RS03870 at 906.743 kb on - strand, within LRK53_RS03870
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 904,652 + LRK53_RS03860 0.70 +0.4 904,652 + LRK53_RS03860 0.70 +1.2 904,652 + LRK53_RS03860 0.70 -0.9 904,652 + LRK53_RS03860 0.70 -1.6 904,652 + LRK53_RS03860 0.70 +0.2 904,652 + LRK53_RS03860 0.70 +0.0 904,652 + LRK53_RS03860 0.70 +1.9 904,653 - LRK53_RS03860 0.70 -0.6 904,653 - LRK53_RS03860 0.70 +0.4 904,653 - LRK53_RS03860 0.70 -1.3 904,653 - LRK53_RS03860 0.70 +0.0 904,653 - LRK53_RS03860 0.70 -0.7 904,688 - LRK53_RS03860 0.71 -0.3 904,697 + LRK53_RS03860 0.72 -0.3 904,698 - LRK53_RS03860 0.72 -0.1 904,727 + LRK53_RS03860 0.73 +1.4 904,728 - LRK53_RS03860 0.73 -1.0 904,826 + LRK53_RS03860 0.76 -0.2 904,826 + LRK53_RS03860 0.76 -1.8 904,826 + LRK53_RS03860 0.76 +1.0 904,826 + LRK53_RS03860 0.76 +2.4 904,827 - LRK53_RS03860 0.76 -2.3 904,827 - LRK53_RS03860 0.76 -0.3 904,827 - LRK53_RS03860 0.76 -2.4 904,827 - LRK53_RS03860 0.76 -0.2 904,875 - LRK53_RS03860 0.78 -0.7 905,111 - LRK53_RS03860 0.86 -0.3 905,249 + -1.1 905,249 + -1.5 905,250 - -0.9 905,264 + -0.7 905,264 + -0.3 905,264 + -0.6 905,264 + +0.5 905,474 + -1.1 905,474 + -1.8 905,474 + -1.4 905,475 - -0.8 905,475 - +0.1 905,544 + -0.6 905,805 + LRK53_RS03865 0.40 -1.0 905,805 + LRK53_RS03865 0.40 -1.4 905,805 + LRK53_RS03865 0.40 +0.2 905,806 - LRK53_RS03865 0.40 -0.5 905,806 - LRK53_RS03865 0.40 -0.2 905,806 - LRK53_RS03865 0.40 -0.1 905,892 + LRK53_RS03865 0.53 +1.0 905,892 + LRK53_RS03865 0.53 -0.8 905,893 - LRK53_RS03865 0.54 -0.6 905,893 - LRK53_RS03865 0.54 -2.0 905,893 - LRK53_RS03865 0.54 -0.3 905,994 + LRK53_RS03865 0.69 -0.6 905,994 + LRK53_RS03865 0.69 -1.4 905,994 + LRK53_RS03865 0.69 -1.8 905,994 + LRK53_RS03865 0.69 -1.1 905,994 + LRK53_RS03865 0.69 -0.6 905,994 + LRK53_RS03865 0.69 -0.7 905,994 + LRK53_RS03865 0.69 -0.1 905,994 + LRK53_RS03865 0.69 +0.2 905,994 + LRK53_RS03865 0.69 +0.1 905,994 + LRK53_RS03865 0.69 -0.5 905,995 - LRK53_RS03865 0.69 -1.5 905,995 - LRK53_RS03865 0.69 -0.4 905,995 - LRK53_RS03865 0.69 -0.3 905,995 - LRK53_RS03865 0.69 -0.9 906,271 + -0.7 906,272 - -1.1 906,300 + -0.5 906,300 + +0.5 906,300 + -0.6 906,300 + -1.1 906,300 + -2.7 906,301 - -0.2 906,301 - -2.0 906,301 - -0.6 906,301 - +0.7 906,310 + +1.5 906,311 - -1.5 906,360 + -0.5 906,360 + -0.1 906,360 + +1.0 906,360 + -1.3 906,360 + +1.1 906,361 - +0.2 906,374 + +0.7 906,374 + +1.9 906,374 + -1.6 906,374 + -1.1 906,374 + +0.4 906,374 + -1.7 906,374 + -1.0 906,374 + -1.3 906,374 + +0.2 906,374 + +0.4 906,374 + -0.6 906,374 + +0.8 906,374 + +1.8 906,374 + -1.3 906,374 + -1.1 906,374 + -0.6 906,374 + +1.3 906,374 + -0.5 906,374 + -0.4 906,374 + -0.3 906,374 + -0.5 906,374 + -1.7 906,374 + -2.4 906,374 + +0.5 906,374 + +0.5 906,375 - -3.0 906,375 - -0.7 906,375 - -0.3 906,375 - +0.5 906,375 - -0.5 906,375 - +0.9 906,375 - -0.6 906,375 - -0.7 906,375 - -2.2 906,375 - -0.5 906,375 - -0.1 906,375 - -1.1 906,375 - +0.1 906,375 - -1.3 906,375 - +0.3 906,375 - -0.3 906,375 - -1.2 906,375 - +0.5 906,375 - +0.0 906,375 - -0.1 906,375 - -1.2 906,375 - -1.9 906,375 - +1.5 906,375 - -1.3 906,375 - +0.2 906,375 - -0.3 906,375 - -0.7 906,375 - -1.4 906,375 - -0.8 906,375 - -2.0 906,375 - -0.3 906,375 - -0.1 906,375 - +1.2 906,474 + -0.1 906,474 + -0.6 906,474 + -1.6 906,474 + -0.0 906,474 + -0.8 906,474 + -1.1 906,474 + +0.8 906,474 + +2.1 906,475 - +0.1 906,475 - -1.2 906,489 - -0.3 906,673 + LRK53_RS03870 0.15 +0.1 906,673 + LRK53_RS03870 0.15 -0.8 906,673 + LRK53_RS03870 0.15 -0.7 906,673 + LRK53_RS03870 0.15 +0.8 906,673 + LRK53_RS03870 0.15 +0.6 906,673 + LRK53_RS03870 0.15 -1.5 906,673 + LRK53_RS03870 0.15 -0.5 906,673 + LRK53_RS03870 0.15 -0.3 906,673 + LRK53_RS03870 0.15 -3.1 906,673 + LRK53_RS03870 0.15 +0.7 906,673 + LRK53_RS03870 0.15 -1.5 906,673 + LRK53_RS03870 0.15 -1.4 906,673 + LRK53_RS03870 0.15 +2.4 906,673 + LRK53_RS03870 0.15 +1.7 906,674 - LRK53_RS03870 0.15 +0.3 906,674 - LRK53_RS03870 0.15 -0.7 906,674 - LRK53_RS03870 0.15 -1.1 906,742 + LRK53_RS03870 0.20 -1.2 906,742 + LRK53_RS03870 0.20 -0.2 906,742 + LRK53_RS03870 0.20 +0.0 906,742 + LRK53_RS03870 0.20 +0.0 906,743 - LRK53_RS03870 0.20 +0.5 906,743 - LRK53_RS03870 0.20 +1.8
Or see this region's nucleotide sequence