Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03745 and LRK53_RS03750 are separated by 328 nucleotides LRK53_RS03750 and LRK53_RS03755 are separated by 15 nucleotides LRK53_RS03755 and LRK53_RS03760 are separated by 9 nucleotides LRK53_RS03760 and LRK53_RS03765 are separated by 97 nucleotides
LRK53_RS03745: LRK53_RS03745 - peptidoglycan DD-metalloendopeptidase family protein, at 883,155 to 884,378
_RS03745
LRK53_RS03750: LRK53_RS03750 - hypothetical protein, at 884,707 to 884,973
_RS03750
LRK53_RS03755: LRK53_RS03755 - glutamate synthase small subunit, at 884,989 to 885,156
_RS03755
LRK53_RS03760: LRK53_RS03760 - NRDE family protein, at 885,166 to 885,945
_RS03760
LRK53_RS03765: LRK53_RS03765 - NAD-dependent DNA ligase LigB, at 886,043 to 887,728
_RS03765
Position (kb) 885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 884.587 kb on - strand at 884.587 kb on - strand at 884.602 kb on + strand at 884.603 kb on - strand at 884.603 kb on - strand at 884.631 kb on + strand at 884.632 kb on - strand at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.734 kb on + strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.735 kb on - strand, within LRK53_RS03750 at 884.942 kb on + strand, within LRK53_RS03750 at 884.942 kb on + strand, within LRK53_RS03750 at 884.942 kb on + strand, within LRK53_RS03750 at 884.943 kb on - strand, within LRK53_RS03750 at 884.943 kb on - strand, within LRK53_RS03750 at 884.943 kb on - strand, within LRK53_RS03750 at 884.943 kb on - strand, within LRK53_RS03750 at 885.154 kb on + strand at 885.154 kb on + strand at 885.154 kb on + strand at 885.154 kb on + strand at 885.154 kb on + strand at 885.155 kb on - strand at 885.155 kb on - strand at 885.155 kb on - strand at 885.155 kb on - strand at 885.155 kb on - strand at 885.424 kb on + strand, within LRK53_RS03760 at 885.424 kb on + strand, within LRK53_RS03760 at 885.424 kb on + strand, within LRK53_RS03760 at 885.425 kb on - strand, within LRK53_RS03760 at 885.425 kb on - strand, within LRK53_RS03760 at 885.425 kb on - strand, within LRK53_RS03760 at 885.532 kb on + strand, within LRK53_RS03760 at 885.805 kb on + strand, within LRK53_RS03760 at 885.893 kb on - strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.958 kb on - strand at 885.958 kb on - strand at 886.006 kb on + strand at 886.226 kb on + strand, within LRK53_RS03765 at 886.227 kb on - strand, within LRK53_RS03765 at 886.227 kb on - strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.808 kb on + strand, within LRK53_RS03765 at 886.808 kb on + strand, within LRK53_RS03765 at 886.808 kb on + strand, within LRK53_RS03765 at 886.809 kb on - strand, within LRK53_RS03765 at 886.862 kb on + strand, within LRK53_RS03765
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 884,587 - +1.7 884,587 - -1.4 884,602 + -1.1 884,603 - +0.9 884,603 - +1.0 884,631 + -0.7 884,632 - +1.9 884,734 + LRK53_RS03750 0.10 -0.7 884,734 + LRK53_RS03750 0.10 -0.8 884,734 + LRK53_RS03750 0.10 -2.1 884,734 + LRK53_RS03750 0.10 -0.6 884,734 + LRK53_RS03750 0.10 +2.9 884,734 + LRK53_RS03750 0.10 -1.3 884,734 + LRK53_RS03750 0.10 -1.1 884,734 + LRK53_RS03750 0.10 -0.1 884,734 + LRK53_RS03750 0.10 -1.1 884,734 + LRK53_RS03750 0.10 -0.4 884,734 + LRK53_RS03750 0.10 +0.4 884,734 + LRK53_RS03750 0.10 +0.5 884,734 + LRK53_RS03750 0.10 +1.4 884,734 + LRK53_RS03750 0.10 +0.4 884,734 + LRK53_RS03750 0.10 -0.1 884,735 - LRK53_RS03750 0.10 +0.6 884,735 - LRK53_RS03750 0.10 -1.2 884,735 - LRK53_RS03750 0.10 -1.4 884,735 - LRK53_RS03750 0.10 -1.3 884,735 - LRK53_RS03750 0.10 +0.0 884,735 - LRK53_RS03750 0.10 -0.1 884,735 - LRK53_RS03750 0.10 +0.5 884,735 - LRK53_RS03750 0.10 +0.8 884,735 - LRK53_RS03750 0.10 +1.0 884,735 - LRK53_RS03750 0.10 -1.0 884,735 - LRK53_RS03750 0.10 -0.8 884,735 - LRK53_RS03750 0.10 -0.9 884,942 + LRK53_RS03750 0.88 -1.2 884,942 + LRK53_RS03750 0.88 -3.1 884,942 + LRK53_RS03750 0.88 -0.4 884,943 - LRK53_RS03750 0.88 -0.7 884,943 - LRK53_RS03750 0.88 -1.0 884,943 - LRK53_RS03750 0.88 -2.4 884,943 - LRK53_RS03750 0.88 -0.3 885,154 + -0.6 885,154 + +0.1 885,154 + +0.9 885,154 + -0.7 885,154 + -0.3 885,155 - -0.5 885,155 - +0.2 885,155 - +0.9 885,155 - -1.1 885,155 - -0.5 885,424 + LRK53_RS03760 0.33 -1.8 885,424 + LRK53_RS03760 0.33 -0.3 885,424 + LRK53_RS03760 0.33 -0.6 885,425 - LRK53_RS03760 0.33 -1.0 885,425 - LRK53_RS03760 0.33 -1.4 885,425 - LRK53_RS03760 0.33 +0.7 885,532 + LRK53_RS03760 0.47 -0.2 885,805 + LRK53_RS03760 0.82 -1.7 885,893 - -0.7 885,957 + -1.2 885,957 + -0.1 885,957 + +0.4 885,957 + -0.8 885,957 + -2.1 885,958 - -1.7 885,958 - +1.0 886,006 + -1.6 886,226 + LRK53_RS03765 0.11 +0.7 886,227 - LRK53_RS03765 0.11 -0.7 886,227 - LRK53_RS03765 0.11 -0.8 886,457 + LRK53_RS03765 0.25 +0.2 886,457 + LRK53_RS03765 0.25 -1.2 886,457 + LRK53_RS03765 0.25 +0.6 886,457 + LRK53_RS03765 0.25 -1.3 886,457 + LRK53_RS03765 0.25 -0.1 886,457 + LRK53_RS03765 0.25 +3.4 886,457 + LRK53_RS03765 0.25 -0.5 886,457 + LRK53_RS03765 0.25 +0.1 886,457 + LRK53_RS03765 0.25 +0.7 886,457 + LRK53_RS03765 0.25 -0.1 886,457 + LRK53_RS03765 0.25 -1.1 886,457 + LRK53_RS03765 0.25 +1.9 886,457 + LRK53_RS03765 0.25 -0.1 886,457 + LRK53_RS03765 0.25 -1.3 886,457 + LRK53_RS03765 0.25 -0.5 886,457 - LRK53_RS03765 0.25 +0.2 886,458 - LRK53_RS03765 0.25 +0.7 886,458 - LRK53_RS03765 0.25 -1.2 886,458 - LRK53_RS03765 0.25 -1.1 886,458 - LRK53_RS03765 0.25 -1.5 886,458 - LRK53_RS03765 0.25 +1.4 886,458 - LRK53_RS03765 0.25 +0.5 886,458 - LRK53_RS03765 0.25 -1.2 886,458 - LRK53_RS03765 0.25 -0.1 886,458 - LRK53_RS03765 0.25 -0.4 886,458 - LRK53_RS03765 0.25 -2.0 886,458 - LRK53_RS03765 0.25 -1.6 886,458 - LRK53_RS03765 0.25 +3.1 886,458 - LRK53_RS03765 0.25 +0.9 886,458 - LRK53_RS03765 0.25 -2.6 886,458 - LRK53_RS03765 0.25 -2.1 886,458 - LRK53_RS03765 0.25 -0.5 886,458 - LRK53_RS03765 0.25 +0.1 886,458 - LRK53_RS03765 0.25 -1.2 886,458 - LRK53_RS03765 0.25 +0.5 886,458 - LRK53_RS03765 0.25 +0.0 886,458 - LRK53_RS03765 0.25 -1.2 886,458 - LRK53_RS03765 0.25 -0.7 886,458 - LRK53_RS03765 0.25 +1.4 886,808 + LRK53_RS03765 0.45 -2.3 886,808 + LRK53_RS03765 0.45 -1.8 886,808 + LRK53_RS03765 0.45 +0.8 886,809 - LRK53_RS03765 0.45 -0.7 886,862 + LRK53_RS03765 0.49 +1.3
Or see this region's nucleotide sequence