Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03235

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03230 and LRK53_RS03235 are separated by 46 nucleotidesLRK53_RS03235 and LRK53_RS03240 are separated by 215 nucleotides LRK53_RS03230: LRK53_RS03230 - alkaline phosphatase, at 757,251 to 759,008 _RS03230 LRK53_RS03235: LRK53_RS03235 - glycerophosphodiester phosphodiesterase, at 759,055 to 759,417 _RS03235 LRK53_RS03240: LRK53_RS03240 - TonB-dependent receptor, at 759,633 to 761,975 _RS03240 Position (kb) 759 760Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.115 kb on + strand, within LRK53_RS03230at 758.116 kb on - strand, within LRK53_RS03230at 758.116 kb on - strand, within LRK53_RS03230at 758.116 kb on - strand, within LRK53_RS03230at 758.116 kb on - strand, within LRK53_RS03230at 758.116 kb on - strand, within LRK53_RS03230at 758.116 kb on - strand, within LRK53_RS03230at 758.116 kb on - strand, within LRK53_RS03230at 758.116 kb on - strand, within LRK53_RS03230at 758.202 kb on + strand, within LRK53_RS03230at 758.202 kb on + strand, within LRK53_RS03230at 758.202 kb on + strand, within LRK53_RS03230at 758.202 kb on + strand, within LRK53_RS03230at 758.202 kb on + strand, within LRK53_RS03230at 758.202 kb on + strand, within LRK53_RS03230at 758.203 kb on - strand, within LRK53_RS03230at 758.203 kb on - strand, within LRK53_RS03230at 758.203 kb on - strand, within LRK53_RS03230at 758.203 kb on - strand, within LRK53_RS03230at 758.203 kb on - strand, within LRK53_RS03230at 758.203 kb on - strand, within LRK53_RS03230at 758.324 kb on + strand, within LRK53_RS03230at 758.535 kb on + strand, within LRK53_RS03230at 758.535 kb on + strand, within LRK53_RS03230at 758.535 kb on + strand, within LRK53_RS03230at 758.535 kb on + strand, within LRK53_RS03230at 758.536 kb on - strand, within LRK53_RS03230at 758.536 kb on - strand, within LRK53_RS03230at 758.536 kb on - strand, within LRK53_RS03230at 758.586 kb on + strand, within LRK53_RS03230at 758.619 kb on + strand, within LRK53_RS03230at 758.620 kb on - strand, within LRK53_RS03230at 758.683 kb on - strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.742 kb on + strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 758.743 kb on - strand, within LRK53_RS03230at 759.182 kb on + strand, within LRK53_RS03235at 759.182 kb on + strand, within LRK53_RS03235at 759.182 kb on + strand, within LRK53_RS03235at 759.182 kb on + strand, within LRK53_RS03235at 759.182 kb on + strand, within LRK53_RS03235at 759.183 kb on - strand, within LRK53_RS03235at 759.343 kb on + strand, within LRK53_RS03235at 759.471 kb on - strandat 759.505 kb on + strandat 759.505 kb on + strandat 759.505 kb on + strandat 759.505 kb on + strandat 759.505 kb on + strandat 759.505 kb on + strandat 759.506 kb on - strandat 759.506 kb on - strandat 759.542 kb on + strandat 759.543 kb on - strandat 759.543 kb on - strandat 760.032 kb on + strand, within LRK53_RS03240at 760.032 kb on + strand, within LRK53_RS03240at 760.032 kb on + strand, within LRK53_RS03240at 760.032 kb on + strand, within LRK53_RS03240at 760.032 kb on + strand, within LRK53_RS03240at 760.032 kb on + strand, within LRK53_RS03240at 760.152 kb on + strand, within LRK53_RS03240at 760.152 kb on + strand, within LRK53_RS03240at 760.152 kb on + strand, within LRK53_RS03240at 760.152 kb on + strand, within LRK53_RS03240at 760.152 kb on + strand, within LRK53_RS03240at 760.153 kb on - strand, within LRK53_RS03240at 760.155 kb on + strand, within LRK53_RS03240at 760.155 kb on + strand, within LRK53_RS03240at 760.156 kb on - strand, within LRK53_RS03240at 760.230 kb on + strand, within LRK53_RS03240at 760.230 kb on + strand, within LRK53_RS03240at 760.230 kb on + strand, within LRK53_RS03240at 760.230 kb on + strand, within LRK53_RS03240at 760.231 kb on - strand, within LRK53_RS03240at 760.231 kb on - strand, within LRK53_RS03240at 760.231 kb on - strand, within LRK53_RS03240at 760.231 kb on - strand, within LRK53_RS03240at 760.231 kb on - strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.272 kb on + strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.273 kb on - strand, within LRK53_RS03240at 760.359 kb on + strand, within LRK53_RS03240at 760.359 kb on + strand, within LRK53_RS03240at 760.360 kb on - strand, within LRK53_RS03240

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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758,115 + LRK53_RS03230 0.49 -0.8
758,115 + LRK53_RS03230 0.49 -0.1
758,115 + LRK53_RS03230 0.49 -1.0
758,115 + LRK53_RS03230 0.49 +0.1
758,115 + LRK53_RS03230 0.49 -0.5
758,115 + LRK53_RS03230 0.49 -1.7
758,115 + LRK53_RS03230 0.49 -0.9
758,115 + LRK53_RS03230 0.49 -1.7
758,115 + LRK53_RS03230 0.49 -2.4
758,115 + LRK53_RS03230 0.49 +0.5
758,115 + LRK53_RS03230 0.49 +0.4
758,116 - LRK53_RS03230 0.49 -2.3
758,116 - LRK53_RS03230 0.49 -0.0
758,116 - LRK53_RS03230 0.49 -0.5
758,116 - LRK53_RS03230 0.49 -0.1
758,116 - LRK53_RS03230 0.49 -0.9
758,116 - LRK53_RS03230 0.49 -0.8
758,116 - LRK53_RS03230 0.49 -0.8
758,116 - LRK53_RS03230 0.49 +0.1
758,202 + LRK53_RS03230 0.54 -1.0
758,202 + LRK53_RS03230 0.54 +0.3
758,202 + LRK53_RS03230 0.54 +0.6
758,202 + LRK53_RS03230 0.54 -1.0
758,202 + LRK53_RS03230 0.54 -0.7
758,202 + LRK53_RS03230 0.54 -0.8
758,203 - LRK53_RS03230 0.54 +0.1
758,203 - LRK53_RS03230 0.54 -2.4
758,203 - LRK53_RS03230 0.54 +0.1
758,203 - LRK53_RS03230 0.54 -0.2
758,203 - LRK53_RS03230 0.54 +1.9
758,203 - LRK53_RS03230 0.54 -0.5
758,324 + LRK53_RS03230 0.61 -0.2
758,535 + LRK53_RS03230 0.73 +0.9
758,535 + LRK53_RS03230 0.73 +1.9
758,535 + LRK53_RS03230 0.73 +0.1
758,535 + LRK53_RS03230 0.73 +0.5
758,536 - LRK53_RS03230 0.73 -1.2
758,536 - LRK53_RS03230 0.73 +0.7
758,536 - LRK53_RS03230 0.73 +1.3
758,586 + LRK53_RS03230 0.76 -1.3
758,619 + LRK53_RS03230 0.78 +0.2
758,620 - LRK53_RS03230 0.78 +0.1
758,683 - LRK53_RS03230 0.81 -2.2
758,742 + LRK53_RS03230 0.85 +2.3
758,742 + LRK53_RS03230 0.85 +2.3
758,742 + LRK53_RS03230 0.85 +0.8
758,742 + LRK53_RS03230 0.85 +0.7
758,742 + LRK53_RS03230 0.85 +1.1
758,742 + LRK53_RS03230 0.85 -0.9
758,742 + LRK53_RS03230 0.85 -0.7
758,742 + LRK53_RS03230 0.85 -0.4
758,742 + LRK53_RS03230 0.85 -2.7
758,742 + LRK53_RS03230 0.85 -0.5
758,743 - LRK53_RS03230 0.85 -0.2
758,743 - LRK53_RS03230 0.85 -1.0
758,743 - LRK53_RS03230 0.85 -0.1
758,743 - LRK53_RS03230 0.85 -0.2
758,743 - LRK53_RS03230 0.85 -0.5
758,743 - LRK53_RS03230 0.85 -3.1
758,743 - LRK53_RS03230 0.85 +0.7
758,743 - LRK53_RS03230 0.85 -2.3
758,743 - LRK53_RS03230 0.85 -0.7
758,743 - LRK53_RS03230 0.85 +0.1
758,743 - LRK53_RS03230 0.85 +2.1
758,743 - LRK53_RS03230 0.85 -0.4
758,743 - LRK53_RS03230 0.85 -0.7
758,743 - LRK53_RS03230 0.85 +0.1
759,182 + LRK53_RS03235 0.35 -1.2
759,182 + LRK53_RS03235 0.35 -0.5
759,182 + LRK53_RS03235 0.35 -2.6
759,182 + LRK53_RS03235 0.35 +2.6
759,182 + LRK53_RS03235 0.35 -0.8
759,183 - LRK53_RS03235 0.35 -1.4
759,343 + LRK53_RS03235 0.79 -0.9
759,471 - -0.5
759,505 + -1.5
759,505 + -0.8
759,505 + +0.3
759,505 + -1.3
759,505 + -0.7
759,505 + -1.0
759,506 - -1.1
759,506 - -0.4
759,542 + -1.8
759,543 - +0.6
759,543 - +1.2
760,032 + LRK53_RS03240 0.17 -1.1
760,032 + LRK53_RS03240 0.17 -2.2
760,032 + LRK53_RS03240 0.17 -1.3
760,032 + LRK53_RS03240 0.17 +1.7
760,032 + LRK53_RS03240 0.17 +1.1
760,032 + LRK53_RS03240 0.17 -1.0
760,152 + LRK53_RS03240 0.22 -0.1
760,152 + LRK53_RS03240 0.22 -3.0
760,152 + LRK53_RS03240 0.22 +0.3
760,152 + LRK53_RS03240 0.22 -1.0
760,152 + LRK53_RS03240 0.22 +2.9
760,153 - LRK53_RS03240 0.22 -0.5
760,155 + LRK53_RS03240 0.22 -1.0
760,155 + LRK53_RS03240 0.22 +0.6
760,156 - LRK53_RS03240 0.22 +0.2
760,230 + LRK53_RS03240 0.25 +0.0
760,230 + LRK53_RS03240 0.25 +0.8
760,230 + LRK53_RS03240 0.25 +1.4
760,230 + LRK53_RS03240 0.25 -0.9
760,231 - LRK53_RS03240 0.26 -0.6
760,231 - LRK53_RS03240 0.26 +1.9
760,231 - LRK53_RS03240 0.26 -0.4
760,231 - LRK53_RS03240 0.26 +1.8
760,231 - LRK53_RS03240 0.26 -0.2
760,272 + LRK53_RS03240 0.27 +0.4
760,272 + LRK53_RS03240 0.27 +0.3
760,272 + LRK53_RS03240 0.27 -1.0
760,272 + LRK53_RS03240 0.27 +2.3
760,272 + LRK53_RS03240 0.27 -3.2
760,272 + LRK53_RS03240 0.27 -1.2
760,272 + LRK53_RS03240 0.27 +1.1
760,272 + LRK53_RS03240 0.27 +0.5
760,272 + LRK53_RS03240 0.27 -0.2
760,272 + LRK53_RS03240 0.27 -1.4
760,272 + LRK53_RS03240 0.27 -1.7
760,272 + LRK53_RS03240 0.27 -0.5
760,272 + LRK53_RS03240 0.27 +0.4
760,272 + LRK53_RS03240 0.27 -0.1
760,272 + LRK53_RS03240 0.27 -0.9
760,272 + LRK53_RS03240 0.27 -0.9
760,273 - LRK53_RS03240 0.27 -1.2
760,273 - LRK53_RS03240 0.27 -0.8
760,273 - LRK53_RS03240 0.27 -0.5
760,273 - LRK53_RS03240 0.27 -1.0
760,273 - LRK53_RS03240 0.27 +1.1
760,273 - LRK53_RS03240 0.27 -1.1
760,273 - LRK53_RS03240 0.27 -0.4
760,273 - LRK53_RS03240 0.27 -1.1
760,273 - LRK53_RS03240 0.27 -0.8
760,273 - LRK53_RS03240 0.27 -2.1
760,273 - LRK53_RS03240 0.27 -3.2
760,273 - LRK53_RS03240 0.27 +0.8
760,273 - LRK53_RS03240 0.27 +0.8
760,273 - LRK53_RS03240 0.27 +1.1
760,273 - LRK53_RS03240 0.27 -0.2
760,273 - LRK53_RS03240 0.27 -0.8
760,359 + LRK53_RS03240 0.31 +0.1
760,359 + LRK53_RS03240 0.31 -1.5
760,360 - LRK53_RS03240 0.31 -1.6

Or see this region's nucleotide sequence