Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03160 and LRK53_RS03165 overlap by 4 nucleotides LRK53_RS03165 and LRK53_RS03170 are separated by 377 nucleotides
LRK53_RS03160: LRK53_RS03160 - homoserine kinase, at 738,399 to 739,397
_RS03160
LRK53_RS03165: LRK53_RS03165 - homoserine dehydrogenase, at 739,394 to 740,545
_RS03165
LRK53_RS03170: LRK53_RS03170 - c-type cytochrome, at 740,923 to 741,699
_RS03170
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 738.547 kb on + strand, within LRK53_RS03160 at 738.548 kb on - strand, within LRK53_RS03160 at 738.548 kb on - strand, within LRK53_RS03160 at 738.976 kb on + strand, within LRK53_RS03160 at 738.976 kb on + strand, within LRK53_RS03160 at 738.976 kb on + strand, within LRK53_RS03160 at 738.977 kb on - strand, within LRK53_RS03160 at 739.308 kb on + strand at 739.309 kb on - strand at 739.309 kb on - strand at 739.383 kb on + strand at 739.507 kb on - strand at 739.864 kb on - strand, within LRK53_RS03165 at 739.864 kb on - strand, within LRK53_RS03165 at 739.864 kb on - strand, within LRK53_RS03165 at 740.044 kb on - strand, within LRK53_RS03165 at 740.163 kb on + strand, within LRK53_RS03165 at 740.640 kb on + strand at 740.640 kb on + strand at 740.640 kb on + strand at 740.640 kb on + strand at 740.640 kb on + strand at 740.640 kb on + strand at 740.640 kb on + strand at 740.641 kb on - strand at 740.641 kb on - strand at 740.641 kb on - strand at 740.641 kb on - strand at 740.641 kb on - strand at 740.641 kb on - strand at 740.641 kb on - strand at 740.641 kb on - strand at 740.679 kb on + strand at 740.679 kb on + strand at 740.679 kb on + strand at 740.679 kb on + strand at 740.679 kb on + strand at 740.680 kb on - strand at 740.680 kb on - strand at 740.680 kb on - strand at 740.680 kb on - strand at 740.680 kb on - strand at 740.691 kb on + strand at 740.691 kb on + strand at 740.691 kb on + strand at 740.691 kb on + strand at 740.691 kb on + strand at 740.692 kb on - strand at 740.692 kb on - strand at 740.692 kb on - strand at 740.692 kb on - strand at 740.692 kb on - strand at 740.692 kb on - strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.781 kb on + strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.782 kb on - strand at 740.793 kb on + strand at 740.794 kb on - strand at 740.794 kb on - strand at 740.800 kb on + strand at 740.800 kb on + strand at 740.800 kb on + strand at 740.800 kb on + strand at 740.800 kb on + strand at 740.801 kb on - strand at 740.801 kb on - strand at 740.801 kb on - strand at 740.801 kb on - strand at 740.801 kb on - strand at 740.801 kb on - strand at 740.801 kb on - strand at 740.801 kb on - strand at 740.911 kb on - strand at 740.928 kb on + strand at 740.928 kb on + strand at 740.928 kb on + strand at 740.928 kb on + strand at 740.928 kb on + strand at 740.928 kb on + strand at 740.928 kb on + strand at 740.929 kb on - strand at 740.929 kb on - strand at 740.929 kb on - strand at 740.929 kb on - strand at 740.958 kb on + strand at 740.959 kb on - strand at 740.959 kb on - strand at 741.169 kb on - strand, within LRK53_RS03170 at 741.190 kb on + strand, within LRK53_RS03170 at 741.190 kb on + strand, within LRK53_RS03170 at 741.191 kb on - strand, within LRK53_RS03170 at 741.191 kb on - strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.229 kb on + strand, within LRK53_RS03170 at 741.230 kb on - strand, within LRK53_RS03170 at 741.230 kb on - strand, within LRK53_RS03170 at 741.230 kb on - strand, within LRK53_RS03170 at 741.256 kb on + strand, within LRK53_RS03170 at 741.256 kb on + strand, within LRK53_RS03170 at 741.256 kb on + strand, within LRK53_RS03170 at 741.257 kb on - strand, within LRK53_RS03170 at 741.277 kb on + strand, within LRK53_RS03170 at 741.277 kb on + strand, within LRK53_RS03170 at 741.466 kb on + strand, within LRK53_RS03170 at 741.466 kb on + strand, within LRK53_RS03170 at 741.467 kb on - strand, within LRK53_RS03170 at 741.467 kb on - strand, within LRK53_RS03170 at 741.467 kb on - strand, within LRK53_RS03170 at 741.472 kb on + strand, within LRK53_RS03170 at 741.472 kb on + strand, within LRK53_RS03170 at 741.472 kb on + strand, within LRK53_RS03170 at 741.472 kb on + strand, within LRK53_RS03170 at 741.473 kb on - strand, within LRK53_RS03170 at 741.473 kb on - strand, within LRK53_RS03170 at 741.473 kb on - strand, within LRK53_RS03170 at 741.529 kb on + strand, within LRK53_RS03170 at 741.529 kb on + strand, within LRK53_RS03170 at 741.529 kb on + strand, within LRK53_RS03170 at 741.529 kb on + strand, within LRK53_RS03170 at 741.530 kb on - strand, within LRK53_RS03170 at 741.530 kb on - strand, within LRK53_RS03170
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 738,547 + LRK53_RS03160 0.15 +0.5 738,548 - LRK53_RS03160 0.15 +1.2 738,548 - LRK53_RS03160 0.15 -0.7 738,976 + LRK53_RS03160 0.58 -0.1 738,976 + LRK53_RS03160 0.58 -0.4 738,976 + LRK53_RS03160 0.58 -2.3 738,977 - LRK53_RS03160 0.58 +1.7 739,308 + -1.4 739,309 - -0.9 739,309 - +1.3 739,383 + -0.1 739,507 - +1.5 739,864 - LRK53_RS03165 0.41 -3.0 739,864 - LRK53_RS03165 0.41 -0.3 739,864 - LRK53_RS03165 0.41 -1.9 740,044 - LRK53_RS03165 0.56 -2.2 740,163 + LRK53_RS03165 0.67 +0.7 740,640 + -0.4 740,640 + -1.2 740,640 + -0.2 740,640 + -0.4 740,640 + -1.7 740,640 + +0.6 740,640 + +0.1 740,641 - -0.7 740,641 - +0.6 740,641 - +0.5 740,641 - +0.3 740,641 - +0.8 740,641 - -0.6 740,641 - -0.2 740,641 - +0.9 740,679 + -2.1 740,679 + +0.1 740,679 + -0.5 740,679 + -1.5 740,679 + +1.6 740,680 - -0.4 740,680 - -0.5 740,680 - -1.2 740,680 - -0.1 740,680 - +0.0 740,691 + +1.8 740,691 + +0.1 740,691 + +0.8 740,691 + -1.1 740,691 + -1.0 740,692 - -0.1 740,692 - +1.1 740,692 - -0.1 740,692 - -2.1 740,692 - -0.1 740,692 - +0.8 740,781 + -0.4 740,781 + -0.7 740,781 + -0.7 740,781 + -1.3 740,781 + +0.9 740,781 + +1.9 740,781 + -1.8 740,781 + +0.1 740,781 + -1.4 740,781 + +0.4 740,782 - -0.8 740,782 - -1.1 740,782 - -0.1 740,782 - -0.2 740,782 - -0.7 740,782 - -0.9 740,782 - +1.3 740,782 - -1.5 740,782 - +1.6 740,782 - -0.4 740,782 - +1.4 740,793 + -0.8 740,794 - -1.0 740,794 - -1.4 740,800 + -0.8 740,800 + -0.5 740,800 + +0.6 740,800 + -1.9 740,800 + +0.3 740,801 - +0.9 740,801 - +0.3 740,801 - +0.8 740,801 - -2.5 740,801 - +1.7 740,801 - +1.3 740,801 - +0.6 740,801 - -1.0 740,911 - +1.9 740,928 + -0.6 740,928 + +1.0 740,928 + -2.8 740,928 + +0.6 740,928 + +0.7 740,928 + +0.3 740,928 + +0.9 740,929 - -2.9 740,929 - -1.3 740,929 - -2.7 740,929 - -2.0 740,958 + -0.0 740,959 - +1.1 740,959 - -1.1 741,169 - LRK53_RS03170 0.32 +1.2 741,190 + LRK53_RS03170 0.34 +2.9 741,190 + LRK53_RS03170 0.34 -1.1 741,191 - LRK53_RS03170 0.34 -1.8 741,191 - LRK53_RS03170 0.34 +0.6 741,229 + LRK53_RS03170 0.39 -0.6 741,229 + LRK53_RS03170 0.39 +1.3 741,229 + LRK53_RS03170 0.39 +0.3 741,229 + LRK53_RS03170 0.39 -0.5 741,229 + LRK53_RS03170 0.39 +0.7 741,229 + LRK53_RS03170 0.39 +0.5 741,229 + LRK53_RS03170 0.39 -0.4 741,229 + LRK53_RS03170 0.39 -1.7 741,229 + LRK53_RS03170 0.39 +3.1 741,229 + LRK53_RS03170 0.39 -1.4 741,229 + LRK53_RS03170 0.39 -1.4 741,229 + LRK53_RS03170 0.39 +0.5 741,229 + LRK53_RS03170 0.39 -0.5 741,229 + LRK53_RS03170 0.39 +0.1 741,229 + LRK53_RS03170 0.39 +1.2 741,229 + LRK53_RS03170 0.39 +0.8 741,229 + LRK53_RS03170 0.39 -0.9 741,229 + LRK53_RS03170 0.39 -1.7 741,230 - LRK53_RS03170 0.40 -0.5 741,230 - LRK53_RS03170 0.40 +0.3 741,230 - LRK53_RS03170 0.40 -0.3 741,256 + LRK53_RS03170 0.43 -2.0 741,256 + LRK53_RS03170 0.43 -1.3 741,256 + LRK53_RS03170 0.43 +0.5 741,257 - LRK53_RS03170 0.43 +0.5 741,277 + LRK53_RS03170 0.46 -1.2 741,277 + LRK53_RS03170 0.46 -2.1 741,466 + LRK53_RS03170 0.70 +0.3 741,466 + LRK53_RS03170 0.70 -0.9 741,467 - LRK53_RS03170 0.70 -1.0 741,467 - LRK53_RS03170 0.70 +1.3 741,467 - LRK53_RS03170 0.70 -1.0 741,472 + LRK53_RS03170 0.71 -0.3 741,472 + LRK53_RS03170 0.71 -1.4 741,472 + LRK53_RS03170 0.71 -0.8 741,472 + LRK53_RS03170 0.71 -0.2 741,473 - LRK53_RS03170 0.71 -0.4 741,473 - LRK53_RS03170 0.71 -0.1 741,473 - LRK53_RS03170 0.71 -1.4 741,529 + LRK53_RS03170 0.78 -1.0 741,529 + LRK53_RS03170 0.78 -0.8 741,529 + LRK53_RS03170 0.78 +0.5 741,529 + LRK53_RS03170 0.78 -1.0 741,530 - LRK53_RS03170 0.78 -0.2 741,530 - LRK53_RS03170 0.78 -0.7
Or see this region's nucleotide sequence