Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02885

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02875 and LRK53_RS02880 overlap by 4 nucleotidesLRK53_RS02880 and LRK53_RS02885 are separated by 10 nucleotidesLRK53_RS02885 and LRK53_RS02890 overlap by 13 nucleotidesLRK53_RS02890 and LRK53_RS02895 are separated by 5 nucleotides LRK53_RS02875: LRK53_RS02875 - SDR family oxidoreductase, at 665,024 to 665,974 _RS02875 LRK53_RS02880: LRK53_RS02880 - glycosyltransferase family 2 protein, at 665,971 to 666,909 _RS02880 LRK53_RS02885: LRK53_RS02885 - glycosyltransferase family 2 protein, at 666,920 to 667,759 _RS02885 LRK53_RS02890: LRK53_RS02890 - glycosyltransferase, at 667,747 to 668,748 _RS02890 LRK53_RS02895: LRK53_RS02895 - O-antigen ligase family protein, at 668,754 to 670,007 _RS02895 Position (kb) 666 667 668Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 665.936 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.001 kb on + strandat 666.002 kb on - strandat 666.002 kb on - strandat 666.002 kb on - strandat 666.002 kb on - strandat 666.002 kb on - strandat 666.002 kb on - strandat 666.007 kb on + strandat 666.007 kb on + strandat 666.007 kb on + strandat 666.007 kb on + strandat 666.008 kb on - strandat 666.008 kb on - strandat 666.008 kb on - strandat 666.127 kb on + strand, within LRK53_RS02880at 666.262 kb on + strand, within LRK53_RS02880at 666.263 kb on - strand, within LRK53_RS02880at 666.263 kb on - strand, within LRK53_RS02880at 666.286 kb on + strand, within LRK53_RS02880at 666.286 kb on + strand, within LRK53_RS02880at 666.286 kb on + strand, within LRK53_RS02880at 666.406 kb on + strand, within LRK53_RS02880at 666.406 kb on + strand, within LRK53_RS02880at 666.406 kb on + strand, within LRK53_RS02880at 666.406 kb on + strand, within LRK53_RS02880at 666.406 kb on + strand, within LRK53_RS02880at 666.406 kb on + strand, within LRK53_RS02880at 666.406 kb on + strand, within LRK53_RS02880at 666.406 kb on + strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.407 kb on - strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.568 kb on + strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.569 kb on - strand, within LRK53_RS02880at 666.571 kb on + strand, within LRK53_RS02880at 666.571 kb on + strand, within LRK53_RS02880at 666.571 kb on + strand, within LRK53_RS02880at 666.571 kb on + strand, within LRK53_RS02880at 666.571 kb on + strand, within LRK53_RS02880at 666.571 kb on + strand, within LRK53_RS02880at 666.571 kb on + strand, within LRK53_RS02880at 666.572 kb on - strand, within LRK53_RS02880at 666.572 kb on - strand, within LRK53_RS02880at 666.572 kb on - strand, within LRK53_RS02880at 666.572 kb on - strand, within LRK53_RS02880at 666.595 kb on + strand, within LRK53_RS02880at 666.649 kb on + strand, within LRK53_RS02880at 666.649 kb on + strand, within LRK53_RS02880at 666.649 kb on + strand, within LRK53_RS02880at 666.649 kb on + strand, within LRK53_RS02880at 666.649 kb on + strand, within LRK53_RS02880at 666.649 kb on + strand, within LRK53_RS02880at 666.649 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.688 kb on + strand, within LRK53_RS02880at 666.689 kb on - strand, within LRK53_RS02880at 666.689 kb on - strand, within LRK53_RS02880at 666.689 kb on - strand, within LRK53_RS02880at 666.784 kb on + strand, within LRK53_RS02880at 666.947 kb on + strandat 666.947 kb on + strandat 666.947 kb on + strandat 666.947 kb on + strandat 666.947 kb on + strandat 666.948 kb on - strandat 666.948 kb on - strandat 666.948 kb on - strandat 666.948 kb on - strandat 666.948 kb on - strandat 667.175 kb on + strand, within LRK53_RS02885at 667.176 kb on - strand, within LRK53_RS02885at 667.176 kb on - strand, within LRK53_RS02885at 667.176 kb on - strand, within LRK53_RS02885at 667.397 kb on + strand, within LRK53_RS02885at 667.397 kb on + strand, within LRK53_RS02885at 667.397 kb on + strand, within LRK53_RS02885at 667.397 kb on + strand, within LRK53_RS02885at 667.397 kb on + strand, within LRK53_RS02885at 667.398 kb on - strand, within LRK53_RS02885at 667.398 kb on - strand, within LRK53_RS02885at 667.595 kb on + strand, within LRK53_RS02885at 667.596 kb on - strand, within LRK53_RS02885at 667.596 kb on - strand, within LRK53_RS02885at 668.042 kb on + strand, within LRK53_RS02890at 668.042 kb on + strand, within LRK53_RS02890at 668.042 kb on + strand, within LRK53_RS02890at 668.042 kb on + strand, within LRK53_RS02890at 668.043 kb on - strand, within LRK53_RS02890at 668.043 kb on - strand, within LRK53_RS02890at 668.043 kb on - strand, within LRK53_RS02890at 668.043 kb on - strand, within LRK53_RS02890at 668.200 kb on + strand, within LRK53_RS02890at 668.200 kb on + strand, within LRK53_RS02890at 668.200 kb on + strand, within LRK53_RS02890at 668.200 kb on + strand, within LRK53_RS02890at 668.200 kb on + strand, within LRK53_RS02890at 668.201 kb on - strand, within LRK53_RS02890at 668.201 kb on - strand, within LRK53_RS02890at 668.429 kb on + strand, within LRK53_RS02890at 668.430 kb on - strand, within LRK53_RS02890at 668.430 kb on - strand, within LRK53_RS02890at 668.430 kb on - strand, within LRK53_RS02890at 668.537 kb on + strand, within LRK53_RS02890at 668.537 kb on + strand, within LRK53_RS02890at 668.537 kb on + strand, within LRK53_RS02890at 668.538 kb on - strand, within LRK53_RS02890at 668.538 kb on - strand, within LRK53_RS02890at 668.538 kb on - strand, within LRK53_RS02890at 668.538 kb on - strand, within LRK53_RS02890at 668.544 kb on + strand, within LRK53_RS02890at 668.544 kb on + strand, within LRK53_RS02890at 668.544 kb on + strand, within LRK53_RS02890at 668.544 kb on + strand, within LRK53_RS02890at 668.544 kb on + strand, within LRK53_RS02890at 668.544 kb on + strand, within LRK53_RS02890at 668.544 kb on + strand, within LRK53_RS02890at 668.544 kb on + strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890at 668.545 kb on - strand, within LRK53_RS02890

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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665,936 + +1.7
666,001 + +1.2
666,001 + -0.5
666,001 + +0.3
666,001 + -1.2
666,001 + +0.6
666,001 + +0.3
666,001 + -1.3
666,001 + -0.0
666,001 + -2.0
666,001 + -0.3
666,001 + -0.1
666,002 - -0.2
666,002 - -3.1
666,002 - -0.1
666,002 - +0.1
666,002 - -0.1
666,002 - -1.2
666,007 + +0.5
666,007 + +0.5
666,007 + -1.6
666,007 + -0.9
666,008 - +0.1
666,008 - -0.1
666,008 - -1.6
666,127 + LRK53_RS02880 0.17 -1.3
666,262 + LRK53_RS02880 0.31 -0.3
666,263 - LRK53_RS02880 0.31 +1.0
666,263 - LRK53_RS02880 0.31 -0.8
666,286 + LRK53_RS02880 0.34 -1.5
666,286 + LRK53_RS02880 0.34 -0.5
666,286 + LRK53_RS02880 0.34 -1.2
666,406 + LRK53_RS02880 0.46 -0.1
666,406 + LRK53_RS02880 0.46 -1.0
666,406 + LRK53_RS02880 0.46 -0.8
666,406 + LRK53_RS02880 0.46 -2.3
666,406 + LRK53_RS02880 0.46 +0.7
666,406 + LRK53_RS02880 0.46 -0.4
666,406 + LRK53_RS02880 0.46 -0.1
666,406 + LRK53_RS02880 0.46 +1.6
666,407 - LRK53_RS02880 0.46 +1.1
666,407 - LRK53_RS02880 0.46 -1.6
666,407 - LRK53_RS02880 0.46 -0.4
666,407 - LRK53_RS02880 0.46 -0.4
666,407 - LRK53_RS02880 0.46 +0.8
666,407 - LRK53_RS02880 0.46 -1.2
666,407 - LRK53_RS02880 0.46 +0.3
666,407 - LRK53_RS02880 0.46 -2.0
666,407 - LRK53_RS02880 0.46 -1.7
666,407 - LRK53_RS02880 0.46 +0.6
666,407 - LRK53_RS02880 0.46 +0.3
666,407 - LRK53_RS02880 0.46 -0.4
666,568 + LRK53_RS02880 0.64 -2.4
666,568 + LRK53_RS02880 0.64 +1.4
666,568 + LRK53_RS02880 0.64 -2.4
666,568 + LRK53_RS02880 0.64 -1.9
666,568 + LRK53_RS02880 0.64 +0.8
666,568 + LRK53_RS02880 0.64 -0.2
666,568 + LRK53_RS02880 0.64 -2.0
666,568 + LRK53_RS02880 0.64 +1.3
666,568 + LRK53_RS02880 0.64 -2.2
666,568 + LRK53_RS02880 0.64 -2.0
666,568 + LRK53_RS02880 0.64 -1.4
666,568 + LRK53_RS02880 0.64 -2.6
666,568 + LRK53_RS02880 0.64 -0.9
666,568 + LRK53_RS02880 0.64 -0.4
666,568 + LRK53_RS02880 0.64 -0.7
666,568 + LRK53_RS02880 0.64 -1.2
666,569 - LRK53_RS02880 0.64 -2.7
666,569 - LRK53_RS02880 0.64 -0.5
666,569 - LRK53_RS02880 0.64 -1.7
666,569 - LRK53_RS02880 0.64 +0.4
666,569 - LRK53_RS02880 0.64 -2.2
666,569 - LRK53_RS02880 0.64 +0.6
666,569 - LRK53_RS02880 0.64 +1.5
666,569 - LRK53_RS02880 0.64 -1.8
666,569 - LRK53_RS02880 0.64 +0.0
666,569 - LRK53_RS02880 0.64 -0.9
666,569 - LRK53_RS02880 0.64 -0.8
666,569 - LRK53_RS02880 0.64 -1.6
666,569 - LRK53_RS02880 0.64 +0.1
666,571 + LRK53_RS02880 0.64 +0.5
666,571 + LRK53_RS02880 0.64 -1.0
666,571 + LRK53_RS02880 0.64 +0.2
666,571 + LRK53_RS02880 0.64 +0.3
666,571 + LRK53_RS02880 0.64 +0.6
666,571 + LRK53_RS02880 0.64 +0.3
666,571 + LRK53_RS02880 0.64 +1.2
666,572 - LRK53_RS02880 0.64 +2.1
666,572 - LRK53_RS02880 0.64 +0.5
666,572 - LRK53_RS02880 0.64 +1.5
666,572 - LRK53_RS02880 0.64 -3.5
666,595 + LRK53_RS02880 0.66 -1.5
666,649 + LRK53_RS02880 0.72 -0.8
666,649 + LRK53_RS02880 0.72 -1.2
666,649 + LRK53_RS02880 0.72 -1.0
666,649 + LRK53_RS02880 0.72 +0.1
666,649 + LRK53_RS02880 0.72 -2.1
666,649 + LRK53_RS02880 0.72 +0.3
666,649 + LRK53_RS02880 0.72 -0.2
666,688 + LRK53_RS02880 0.76 +0.9
666,688 + LRK53_RS02880 0.76 +0.5
666,688 + LRK53_RS02880 0.76 -0.7
666,688 + LRK53_RS02880 0.76 -1.1
666,688 + LRK53_RS02880 0.76 +0.3
666,688 + LRK53_RS02880 0.76 +0.2
666,688 + LRK53_RS02880 0.76 -2.5
666,688 + LRK53_RS02880 0.76 -1.7
666,688 + LRK53_RS02880 0.76 +2.1
666,688 + LRK53_RS02880 0.76 -0.1
666,689 - LRK53_RS02880 0.76 -0.2
666,689 - LRK53_RS02880 0.76 -0.5
666,689 - LRK53_RS02880 0.76 -1.5
666,784 + LRK53_RS02880 0.87 -0.2
666,947 + -0.9
666,947 + +0.3
666,947 + -0.4
666,947 + -1.5
666,947 + +0.8
666,948 - -1.7
666,948 - -0.3
666,948 - -1.8
666,948 - -1.7
666,948 - -2.4
667,175 + LRK53_RS02885 0.30 -0.2
667,176 - LRK53_RS02885 0.30 +0.0
667,176 - LRK53_RS02885 0.30 +0.3
667,176 - LRK53_RS02885 0.30 -1.9
667,397 + LRK53_RS02885 0.57 -1.8
667,397 + LRK53_RS02885 0.57 +0.3
667,397 + LRK53_RS02885 0.57 -1.0
667,397 + LRK53_RS02885 0.57 -0.2
667,397 + LRK53_RS02885 0.57 -1.2
667,398 - LRK53_RS02885 0.57 -0.5
667,398 - LRK53_RS02885 0.57 +0.5
667,595 + LRK53_RS02885 0.80 +0.1
667,596 - LRK53_RS02885 0.80 -2.6
667,596 - LRK53_RS02885 0.80 -2.1
668,042 + LRK53_RS02890 0.29 -1.3
668,042 + LRK53_RS02890 0.29 -1.5
668,042 + LRK53_RS02890 0.29 -2.4
668,042 + LRK53_RS02890 0.29 +0.6
668,043 - LRK53_RS02890 0.30 -0.5
668,043 - LRK53_RS02890 0.30 -0.2
668,043 - LRK53_RS02890 0.30 -1.3
668,043 - LRK53_RS02890 0.30 +0.1
668,200 + LRK53_RS02890 0.45 -0.5
668,200 + LRK53_RS02890 0.45 -1.0
668,200 + LRK53_RS02890 0.45 -2.4
668,200 + LRK53_RS02890 0.45 -0.7
668,200 + LRK53_RS02890 0.45 +0.6
668,201 - LRK53_RS02890 0.45 -0.7
668,201 - LRK53_RS02890 0.45 -1.3
668,429 + LRK53_RS02890 0.68 +0.3
668,430 - LRK53_RS02890 0.68 -3.1
668,430 - LRK53_RS02890 0.68 -3.3
668,430 - LRK53_RS02890 0.68 -1.8
668,537 + LRK53_RS02890 0.79 +0.3
668,537 + LRK53_RS02890 0.79 -0.0
668,537 + LRK53_RS02890 0.79 -0.4
668,538 - LRK53_RS02890 0.79 -2.2
668,538 - LRK53_RS02890 0.79 -0.2
668,538 - LRK53_RS02890 0.79 +0.7
668,538 - LRK53_RS02890 0.79 -2.7
668,544 + LRK53_RS02890 0.80 +0.2
668,544 + LRK53_RS02890 0.80 +1.3
668,544 + LRK53_RS02890 0.80 -0.9
668,544 + LRK53_RS02890 0.80 -1.7
668,544 + LRK53_RS02890 0.80 -0.4
668,544 + LRK53_RS02890 0.80 -2.6
668,544 + LRK53_RS02890 0.80 -1.7
668,544 + LRK53_RS02890 0.80 -1.0
668,545 - LRK53_RS02890 0.80 -0.1
668,545 - LRK53_RS02890 0.80 +0.8
668,545 - LRK53_RS02890 0.80 +3.2
668,545 - LRK53_RS02890 0.80 -1.4
668,545 - LRK53_RS02890 0.80 -1.6
668,545 - LRK53_RS02890 0.80 -2.8
668,545 - LRK53_RS02890 0.80 -2.1
668,545 - LRK53_RS02890 0.80 +0.3
668,545 - LRK53_RS02890 0.80 +0.5
668,545 - LRK53_RS02890 0.80 -0.4
668,545 - LRK53_RS02890 0.80 -0.2
668,545 - LRK53_RS02890 0.80 -0.2

Or see this region's nucleotide sequence