Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02835 and LRK53_RS02840 are separated by 95 nucleotides LRK53_RS02840 and LRK53_RS02845 are separated by 13 nucleotides LRK53_RS02845 and LRK53_RS02850 are separated by 336 nucleotides LRK53_RS02850 and LRK53_RS02855 are separated by 122 nucleotides
LRK53_RS02835: LRK53_RS02835 - ATP-dependent RNA helicase DbpA, at 657,460 to 658,839
_RS02835
LRK53_RS02840: LRK53_RS02840 - dihydroneopterin aldolase, at 658,935 to 659,291
_RS02840
LRK53_RS02845: LRK53_RS02845 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 659,305 to 659,793
_RS02845
LRK53_RS02850: LRK53_RS02850 - response regulator, at 660,130 to 660,564
_RS02850
LRK53_RS02855: LRK53_RS02855 - tetratricopeptide repeat protein, at 660,687 to 661,007
_RS02855
Position (kb) 659
660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 658.775 kb on + strand at 658.907 kb on + strand at 658.907 kb on + strand at 658.907 kb on + strand at 659.290 kb on - strand at 659.318 kb on - strand at 659.353 kb on + strand at 659.417 kb on - strand, within LRK53_RS02845 at 659.596 kb on + strand, within LRK53_RS02845 at 659.596 kb on + strand, within LRK53_RS02845 at 659.597 kb on - strand, within LRK53_RS02845 at 659.597 kb on - strand, within LRK53_RS02845 at 659.597 kb on - strand, within LRK53_RS02845 at 659.597 kb on - strand, within LRK53_RS02845 at 660.217 kb on + strand, within LRK53_RS02850 at 660.217 kb on + strand, within LRK53_RS02850 at 660.218 kb on - strand, within LRK53_RS02850 at 660.218 kb on - strand, within LRK53_RS02850 at 660.300 kb on - strand, within LRK53_RS02850 at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.688 kb on + strand at 660.689 kb on - strand at 660.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 658,775 + -0.1 658,907 + -1.7 658,907 + -1.6 658,907 + -1.0 659,290 - +0.3 659,318 - +0.9 659,353 + -0.7 659,417 - LRK53_RS02845 0.23 +1.2 659,596 + LRK53_RS02845 0.60 -0.6 659,596 + LRK53_RS02845 0.60 -2.0 659,597 - LRK53_RS02845 0.60 -1.8 659,597 - LRK53_RS02845 0.60 -1.1 659,597 - LRK53_RS02845 0.60 -0.7 659,597 - LRK53_RS02845 0.60 -1.2 660,217 + LRK53_RS02850 0.20 -0.4 660,217 + LRK53_RS02850 0.20 +1.3 660,218 - LRK53_RS02850 0.20 +0.1 660,218 - LRK53_RS02850 0.20 -0.7 660,300 - LRK53_RS02850 0.39 +0.2 660,568 + +0.1 660,568 + -0.5 660,568 + +0.6 660,568 + +0.8 660,568 + -2.4 660,568 + -0.7 660,568 + -1.8 660,568 + -1.2 660,568 + -0.2 660,568 + -0.9 660,568 + -1.9 660,568 + -0.3 660,568 + -1.1 660,569 - +0.1 660,569 - -1.3 660,569 - -0.5 660,569 - +0.4 660,569 - +0.3 660,569 - +0.3 660,569 - +1.9 660,569 - -1.2 660,569 - +0.8 660,569 - +1.3 660,569 - -2.3 660,569 - -0.6 660,569 - +0.3 660,569 - -0.9 660,688 + -1.1 660,689 - -2.3 660,689 - +1.3
Or see this region's nucleotide sequence