Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02685

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02680 and LRK53_RS02685 are separated by 80 nucleotidesLRK53_RS02685 and LRK53_RS02690 are separated by 102 nucleotidesLRK53_RS02690 and LRK53_RS02695 are separated by 109 nucleotides LRK53_RS02680: LRK53_RS02680 - TraB/GumN family protein, at 620,205 to 621,242 _RS02680 LRK53_RS02685: LRK53_RS02685 - aldo/keto reductase, at 621,323 to 622,267 _RS02685 LRK53_RS02690: LRK53_RS02690 - hypothetical protein, at 622,370 to 622,567 _RS02690 LRK53_RS02695: LRK53_RS02695 - LysR substrate-binding domain-containing protein, at 622,677 to 623,597 _RS02695 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1 2at 620.518 kb on + strand, within LRK53_RS02680at 620.518 kb on + strand, within LRK53_RS02680at 620.518 kb on + strand, within LRK53_RS02680at 620.519 kb on - strand, within LRK53_RS02680at 620.519 kb on - strand, within LRK53_RS02680at 620.519 kb on - strand, within LRK53_RS02680at 620.519 kb on - strand, within LRK53_RS02680at 620.574 kb on + strand, within LRK53_RS02680at 620.574 kb on + strand, within LRK53_RS02680at 620.574 kb on + strand, within LRK53_RS02680at 620.574 kb on + strand, within LRK53_RS02680at 620.575 kb on - strand, within LRK53_RS02680at 620.575 kb on - strand, within LRK53_RS02680at 620.575 kb on - strand, within LRK53_RS02680at 620.575 kb on - strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.634 kb on + strand, within LRK53_RS02680at 620.635 kb on - strand, within LRK53_RS02680at 620.635 kb on - strand, within LRK53_RS02680at 620.635 kb on - strand, within LRK53_RS02680at 620.635 kb on - strand, within LRK53_RS02680at 620.635 kb on - strand, within LRK53_RS02680at 620.635 kb on - strand, within LRK53_RS02680at 620.635 kb on - strand, within LRK53_RS02680at 620.635 kb on - strand, within LRK53_RS02680at 620.664 kb on + strand, within LRK53_RS02680at 620.664 kb on + strand, within LRK53_RS02680at 620.664 kb on + strand, within LRK53_RS02680at 620.664 kb on + strand, within LRK53_RS02680at 620.664 kb on + strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.665 kb on - strand, within LRK53_RS02680at 620.724 kb on + strand, within LRK53_RS02680at 620.724 kb on + strand, within LRK53_RS02680at 620.724 kb on + strand, within LRK53_RS02680at 620.724 kb on + strand, within LRK53_RS02680at 620.724 kb on + strand, within LRK53_RS02680at 620.724 kb on + strand, within LRK53_RS02680at 620.724 kb on + strand, within LRK53_RS02680at 620.724 kb on + strand, within LRK53_RS02680at 620.725 kb on - strand, within LRK53_RS02680at 620.725 kb on - strand, within LRK53_RS02680at 620.725 kb on - strand, within LRK53_RS02680at 620.725 kb on - strand, within LRK53_RS02680at 620.725 kb on - strand, within LRK53_RS02680at 620.725 kb on - strand, within LRK53_RS02680at 620.725 kb on - strand, within LRK53_RS02680at 620.725 kb on - strand, within LRK53_RS02680at 620.829 kb on + strand, within LRK53_RS02680at 620.829 kb on + strand, within LRK53_RS02680at 620.830 kb on - strand, within LRK53_RS02680at 620.830 kb on - strand, within LRK53_RS02680at 620.830 kb on - strand, within LRK53_RS02680at 620.912 kb on + strand, within LRK53_RS02680at 621.193 kb on - strandat 621.193 kb on - strandat 621.193 kb on - strandat 621.220 kb on - strandat 621.251 kb on - strandat 621.251 kb on - strandat 621.524 kb on + strand, within LRK53_RS02685at 621.524 kb on + strand, within LRK53_RS02685at 621.524 kb on + strand, within LRK53_RS02685at 621.524 kb on + strand, within LRK53_RS02685at 621.524 kb on + strand, within LRK53_RS02685at 621.524 kb on + strand, within LRK53_RS02685at 621.525 kb on - strand, within LRK53_RS02685at 621.525 kb on - strand, within LRK53_RS02685at 621.525 kb on - strand, within LRK53_RS02685at 621.525 kb on - strand, within LRK53_RS02685at 621.525 kb on - strand, within LRK53_RS02685at 621.577 kb on + strand, within LRK53_RS02685at 621.577 kb on + strand, within LRK53_RS02685at 621.578 kb on - strand, within LRK53_RS02685at 621.578 kb on - strand, within LRK53_RS02685at 621.578 kb on - strand, within LRK53_RS02685at 621.578 kb on - strand, within LRK53_RS02685at 621.578 kb on - strand, within LRK53_RS02685at 621.578 kb on - strand, within LRK53_RS02685at 621.578 kb on - strand, within LRK53_RS02685at 621.606 kb on + strand, within LRK53_RS02685at 621.606 kb on + strand, within LRK53_RS02685at 621.606 kb on + strand, within LRK53_RS02685at 621.607 kb on - strand, within LRK53_RS02685at 621.607 kb on - strand, within LRK53_RS02685at 621.607 kb on - strand, within LRK53_RS02685at 621.607 kb on - strand, within LRK53_RS02685at 621.607 kb on - strand, within LRK53_RS02685at 621.607 kb on - strand, within LRK53_RS02685at 621.639 kb on + strand, within LRK53_RS02685at 621.639 kb on + strand, within LRK53_RS02685at 621.639 kb on + strand, within LRK53_RS02685at 621.639 kb on + strand, within LRK53_RS02685at 621.640 kb on - strand, within LRK53_RS02685at 621.640 kb on - strand, within LRK53_RS02685at 621.640 kb on - strand, within LRK53_RS02685at 621.640 kb on - strand, within LRK53_RS02685at 621.640 kb on - strand, within LRK53_RS02685at 621.640 kb on - strand, within LRK53_RS02685at 621.642 kb on + strand, within LRK53_RS02685at 621.642 kb on + strand, within LRK53_RS02685at 621.642 kb on + strand, within LRK53_RS02685at 621.642 kb on + strand, within LRK53_RS02685at 621.643 kb on - strand, within LRK53_RS02685at 621.643 kb on - strand, within LRK53_RS02685at 621.643 kb on - strand, within LRK53_RS02685at 621.643 kb on - strand, within LRK53_RS02685at 621.643 kb on - strand, within LRK53_RS02685at 621.643 kb on - strand, within LRK53_RS02685at 621.643 kb on - strand, within LRK53_RS02685at 621.643 kb on - strand, within LRK53_RS02685at 621.659 kb on - strand, within LRK53_RS02685at 621.659 kb on - strand, within LRK53_RS02685at 621.697 kb on - strand, within LRK53_RS02685at 621.720 kb on + strand, within LRK53_RS02685at 621.720 kb on + strand, within LRK53_RS02685at 621.720 kb on + strand, within LRK53_RS02685at 621.720 kb on + strand, within LRK53_RS02685at 621.720 kb on + strand, within LRK53_RS02685at 621.721 kb on - strand, within LRK53_RS02685at 621.721 kb on - strand, within LRK53_RS02685at 621.906 kb on + strand, within LRK53_RS02685at 621.906 kb on + strand, within LRK53_RS02685at 621.906 kb on + strand, within LRK53_RS02685at 621.906 kb on + strand, within LRK53_RS02685at 621.906 kb on + strand, within LRK53_RS02685at 621.906 kb on + strand, within LRK53_RS02685at 621.907 kb on - strand, within LRK53_RS02685at 621.907 kb on - strand, within LRK53_RS02685at 621.907 kb on - strand, within LRK53_RS02685at 621.907 kb on - strand, within LRK53_RS02685at 621.907 kb on - strand, within LRK53_RS02685at 622.110 kb on + strand, within LRK53_RS02685at 622.110 kb on + strand, within LRK53_RS02685at 622.111 kb on - strand, within LRK53_RS02685at 622.111 kb on - strand, within LRK53_RS02685at 622.111 kb on - strand, within LRK53_RS02685at 622.317 kb on + strandat 622.318 kb on - strandat 622.318 kb on - strandat 622.318 kb on - strandat 622.318 kb on - strandat 622.614 kb on + strandat 622.614 kb on + strandat 622.614 kb on + strandat 622.614 kb on + strandat 622.614 kb on + strandat 622.614 kb on + strandat 622.614 kb on + strandat 622.615 kb on - strandat 622.615 kb on - strandat 622.615 kb on - strandat 622.615 kb on - strandat 622.615 kb on - strandat 622.615 kb on - strandat 622.615 kb on - strandat 622.615 kb on - strandat 622.644 kb on - strandat 622.644 kb on - strandat 622.644 kb on - strandat 622.645 kb on + strandat 622.645 kb on + strandat 622.645 kb on + strandat 622.645 kb on + strandat 622.646 kb on - strandat 622.646 kb on - strandat 622.646 kb on - strandat 623.106 kb on + strand, within LRK53_RS02695

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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620,518 + LRK53_RS02680 0.30 -0.0
620,518 + LRK53_RS02680 0.30 -1.1
620,518 + LRK53_RS02680 0.30 -1.1
620,519 - LRK53_RS02680 0.30 -1.9
620,519 - LRK53_RS02680 0.30 -2.7
620,519 - LRK53_RS02680 0.30 -0.2
620,519 - LRK53_RS02680 0.30 -1.0
620,574 + LRK53_RS02680 0.36 -0.8
620,574 + LRK53_RS02680 0.36 -0.7
620,574 + LRK53_RS02680 0.36 -0.4
620,574 + LRK53_RS02680 0.36 +0.2
620,575 - LRK53_RS02680 0.36 +1.3
620,575 - LRK53_RS02680 0.36 -0.0
620,575 - LRK53_RS02680 0.36 +0.8
620,575 - LRK53_RS02680 0.36 -1.1
620,634 + LRK53_RS02680 0.41 +0.5
620,634 + LRK53_RS02680 0.41 -2.5
620,634 + LRK53_RS02680 0.41 -1.0
620,634 + LRK53_RS02680 0.41 -2.3
620,634 + LRK53_RS02680 0.41 -1.3
620,634 + LRK53_RS02680 0.41 -0.8
620,634 + LRK53_RS02680 0.41 -0.4
620,634 + LRK53_RS02680 0.41 +0.7
620,634 + LRK53_RS02680 0.41 -1.1
620,635 - LRK53_RS02680 0.41 -1.9
620,635 - LRK53_RS02680 0.41 -1.7
620,635 - LRK53_RS02680 0.41 +0.4
620,635 - LRK53_RS02680 0.41 -0.5
620,635 - LRK53_RS02680 0.41 -0.2
620,635 - LRK53_RS02680 0.41 -1.6
620,635 - LRK53_RS02680 0.41 -2.5
620,635 - LRK53_RS02680 0.41 -1.1
620,664 + LRK53_RS02680 0.44 -0.8
620,664 + LRK53_RS02680 0.44 -0.2
620,664 + LRK53_RS02680 0.44 -1.3
620,664 + LRK53_RS02680 0.44 -0.0
620,664 + LRK53_RS02680 0.44 -0.4
620,665 - LRK53_RS02680 0.44 +0.2
620,665 - LRK53_RS02680 0.44 -1.2
620,665 - LRK53_RS02680 0.44 -0.0
620,665 - LRK53_RS02680 0.44 +0.3
620,665 - LRK53_RS02680 0.44 +0.1
620,665 - LRK53_RS02680 0.44 -0.2
620,665 - LRK53_RS02680 0.44 -1.8
620,665 - LRK53_RS02680 0.44 +0.2
620,665 - LRK53_RS02680 0.44 +0.1
620,665 - LRK53_RS02680 0.44 +0.3
620,665 - LRK53_RS02680 0.44 -2.1
620,665 - LRK53_RS02680 0.44 -1.0
620,724 + LRK53_RS02680 0.50 -0.7
620,724 + LRK53_RS02680 0.50 -1.7
620,724 + LRK53_RS02680 0.50 +2.3
620,724 + LRK53_RS02680 0.50 -0.8
620,724 + LRK53_RS02680 0.50 +1.0
620,724 + LRK53_RS02680 0.50 -1.7
620,724 + LRK53_RS02680 0.50 -0.4
620,724 + LRK53_RS02680 0.50 +0.8
620,725 - LRK53_RS02680 0.50 -0.9
620,725 - LRK53_RS02680 0.50 +0.0
620,725 - LRK53_RS02680 0.50 +0.1
620,725 - LRK53_RS02680 0.50 +0.5
620,725 - LRK53_RS02680 0.50 -0.9
620,725 - LRK53_RS02680 0.50 +0.4
620,725 - LRK53_RS02680 0.50 -0.5
620,725 - LRK53_RS02680 0.50 -0.5
620,829 + LRK53_RS02680 0.60 +0.9
620,829 + LRK53_RS02680 0.60 -0.7
620,830 - LRK53_RS02680 0.60 -0.7
620,830 - LRK53_RS02680 0.60 +0.4
620,830 - LRK53_RS02680 0.60 -0.6
620,912 + LRK53_RS02680 0.68 -0.5
621,193 - -1.0
621,193 - -0.4
621,193 - -0.5
621,220 - +0.3
621,251 - -1.0
621,251 - -0.6
621,524 + LRK53_RS02685 0.21 -0.8
621,524 + LRK53_RS02685 0.21 -1.0
621,524 + LRK53_RS02685 0.21 -1.5
621,524 + LRK53_RS02685 0.21 +0.8
621,524 + LRK53_RS02685 0.21 +0.9
621,524 + LRK53_RS02685 0.21 -1.1
621,525 - LRK53_RS02685 0.21 -1.0
621,525 - LRK53_RS02685 0.21 -1.0
621,525 - LRK53_RS02685 0.21 -0.0
621,525 - LRK53_RS02685 0.21 +1.5
621,525 - LRK53_RS02685 0.21 -1.8
621,577 + LRK53_RS02685 0.27 +0.6
621,577 + LRK53_RS02685 0.27 -2.0
621,578 - LRK53_RS02685 0.27 -0.8
621,578 - LRK53_RS02685 0.27 +0.5
621,578 - LRK53_RS02685 0.27 +1.8
621,578 - LRK53_RS02685 0.27 +1.2
621,578 - LRK53_RS02685 0.27 +1.4
621,578 - LRK53_RS02685 0.27 +0.2
621,578 - LRK53_RS02685 0.27 -0.9
621,606 + LRK53_RS02685 0.30 -0.3
621,606 + LRK53_RS02685 0.30 +0.4
621,606 + LRK53_RS02685 0.30 -1.1
621,607 - LRK53_RS02685 0.30 -0.4
621,607 - LRK53_RS02685 0.30 +0.2
621,607 - LRK53_RS02685 0.30 -1.1
621,607 - LRK53_RS02685 0.30 +0.2
621,607 - LRK53_RS02685 0.30 -1.7
621,607 - LRK53_RS02685 0.30 -0.8
621,639 + LRK53_RS02685 0.33 -0.0
621,639 + LRK53_RS02685 0.33 -0.0
621,639 + LRK53_RS02685 0.33 -0.4
621,639 + LRK53_RS02685 0.33 -0.5
621,640 - LRK53_RS02685 0.34 -0.7
621,640 - LRK53_RS02685 0.34 -0.9
621,640 - LRK53_RS02685 0.34 +1.0
621,640 - LRK53_RS02685 0.34 -1.7
621,640 - LRK53_RS02685 0.34 -1.9
621,640 - LRK53_RS02685 0.34 -0.9
621,642 + LRK53_RS02685 0.34 -0.7
621,642 + LRK53_RS02685 0.34 -0.7
621,642 + LRK53_RS02685 0.34 +0.3
621,642 + LRK53_RS02685 0.34 +0.5
621,643 - LRK53_RS02685 0.34 +0.4
621,643 - LRK53_RS02685 0.34 +1.6
621,643 - LRK53_RS02685 0.34 +0.5
621,643 - LRK53_RS02685 0.34 +1.4
621,643 - LRK53_RS02685 0.34 -0.5
621,643 - LRK53_RS02685 0.34 +1.0
621,643 - LRK53_RS02685 0.34 +0.8
621,643 - LRK53_RS02685 0.34 -2.3
621,659 - LRK53_RS02685 0.36 -0.7
621,659 - LRK53_RS02685 0.36 -0.7
621,697 - LRK53_RS02685 0.40 -0.0
621,720 + LRK53_RS02685 0.42 +1.0
621,720 + LRK53_RS02685 0.42 +0.1
621,720 + LRK53_RS02685 0.42 -0.4
621,720 + LRK53_RS02685 0.42 -2.1
621,720 + LRK53_RS02685 0.42 +0.2
621,721 - LRK53_RS02685 0.42 +1.1
621,721 - LRK53_RS02685 0.42 -2.4
621,906 + LRK53_RS02685 0.62 +1.2
621,906 + LRK53_RS02685 0.62 -0.4
621,906 + LRK53_RS02685 0.62 -0.6
621,906 + LRK53_RS02685 0.62 -2.7
621,906 + LRK53_RS02685 0.62 +0.0
621,906 + LRK53_RS02685 0.62 +0.4
621,907 - LRK53_RS02685 0.62 +0.3
621,907 - LRK53_RS02685 0.62 -1.5
621,907 - LRK53_RS02685 0.62 -0.5
621,907 - LRK53_RS02685 0.62 -0.8
621,907 - LRK53_RS02685 0.62 -0.9
622,110 + LRK53_RS02685 0.83 -0.5
622,110 + LRK53_RS02685 0.83 -0.6
622,111 - LRK53_RS02685 0.83 -0.3
622,111 - LRK53_RS02685 0.83 +1.3
622,111 - LRK53_RS02685 0.83 -1.5
622,317 + +0.1
622,318 - +0.3
622,318 - -0.3
622,318 - -1.1
622,318 - -2.1
622,614 + -1.8
622,614 + -0.0
622,614 + +0.4
622,614 + +0.6
622,614 + -0.7
622,614 + -1.4
622,614 + -0.6
622,615 - -0.6
622,615 - -0.4
622,615 - +0.0
622,615 - -0.4
622,615 - -0.9
622,615 - -1.7
622,615 - -1.5
622,615 - -1.0
622,644 - -1.5
622,644 - -0.8
622,644 - -1.3
622,645 + -0.4
622,645 + -1.5
622,645 + -0.9
622,645 + -1.9
622,646 - -0.7
622,646 - -1.7
622,646 - -0.3
623,106 + LRK53_RS02695 0.47 +0.1

Or see this region's nucleotide sequence