Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02500 and LRK53_RS02505 are separated by 13 nucleotides LRK53_RS02505 and LRK53_RS02510 are separated by 62 nucleotides
LRK53_RS02500: LRK53_RS02500 - hypothetical protein, at 573,492 to 574,121
_RS02500
LRK53_RS02505: LRK53_RS02505 - glycine zipper domain-containing protein, at 574,135 to 574,836
_RS02505
LRK53_RS02510: LRK53_RS02510 - hypothetical protein, at 574,899 to 575,921
_RS02510
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 572.567 kb on - strand at 572.608 kb on + strand at 572.608 kb on + strand at 572.608 kb on + strand at 572.608 kb on + strand at 572.608 kb on + strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.614 kb on + strand at 572.614 kb on + strand at 572.614 kb on + strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.713 kb on + strand at 572.713 kb on + strand at 572.714 kb on - strand at 572.801 kb on + strand at 572.802 kb on - strand at 572.802 kb on - strand at 572.802 kb on - strand at 573.386 kb on - strand at 573.386 kb on - strand at 573.463 kb on + strand at 573.503 kb on + strand at 573.503 kb on + strand at 573.503 kb on + strand at 573.503 kb on + strand at 573.538 kb on + strand at 573.538 kb on + strand at 573.538 kb on + strand at 573.539 kb on - strand at 573.539 kb on - strand at 573.561 kb on + strand, within LRK53_RS02500 at 573.561 kb on + strand, within LRK53_RS02500 at 573.561 kb on + strand, within LRK53_RS02500 at 573.561 kb on + strand, within LRK53_RS02500 at 573.561 kb on + strand, within LRK53_RS02500 at 573.561 kb on + strand, within LRK53_RS02500 at 573.561 kb on + strand, within LRK53_RS02500 at 573.561 kb on + strand, within LRK53_RS02500 at 573.562 kb on - strand, within LRK53_RS02500 at 573.562 kb on - strand, within LRK53_RS02500 at 573.562 kb on - strand, within LRK53_RS02500 at 573.562 kb on - strand, within LRK53_RS02500 at 573.562 kb on - strand, within LRK53_RS02500 at 573.562 kb on - strand, within LRK53_RS02500 at 573.562 kb on - strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.993 kb on + strand, within LRK53_RS02500 at 573.994 kb on - strand, within LRK53_RS02500 at 573.994 kb on - strand, within LRK53_RS02500 at 573.994 kb on - strand, within LRK53_RS02500 at 573.994 kb on - strand, within LRK53_RS02500 at 573.994 kb on - strand, within LRK53_RS02500 at 573.994 kb on - strand, within LRK53_RS02500 at 573.994 kb on - strand, within LRK53_RS02500 at 573.994 kb on - strand, within LRK53_RS02500 at 574.140 kb on + strand at 574.140 kb on + strand at 574.140 kb on + strand at 574.140 kb on + strand at 574.141 kb on - strand at 574.141 kb on - strand at 574.141 kb on - strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.146 kb on + strand at 574.147 kb on - strand at 574.147 kb on - strand at 574.147 kb on - strand at 574.147 kb on - strand at 574.147 kb on - strand at 574.147 kb on - strand at 574.147 kb on - strand at 574.167 kb on + strand at 574.167 kb on + strand at 574.167 kb on + strand at 574.167 kb on + strand at 574.168 kb on - strand at 574.407 kb on + strand, within LRK53_RS02505 at 574.407 kb on + strand, within LRK53_RS02505 at 574.407 kb on + strand, within LRK53_RS02505 at 574.407 kb on + strand, within LRK53_RS02505 at 574.407 kb on + strand, within LRK53_RS02505 at 574.407 kb on + strand, within LRK53_RS02505 at 574.407 kb on + strand, within LRK53_RS02505 at 574.407 kb on + strand, within LRK53_RS02505 at 574.407 kb on - strand, within LRK53_RS02505 at 574.408 kb on - strand, within LRK53_RS02505 at 574.408 kb on - strand, within LRK53_RS02505 at 574.408 kb on - strand, within LRK53_RS02505 at 574.408 kb on - strand, within LRK53_RS02505 at 574.408 kb on - strand, within LRK53_RS02505 at 574.408 kb on - strand, within LRK53_RS02505 at 574.414 kb on + strand, within LRK53_RS02505 at 574.414 kb on + strand, within LRK53_RS02505 at 574.414 kb on + strand, within LRK53_RS02505 at 574.414 kb on + strand, within LRK53_RS02505 at 574.415 kb on - strand, within LRK53_RS02505 at 574.415 kb on - strand, within LRK53_RS02505 at 574.415 kb on - strand, within LRK53_RS02505 at 574.415 kb on - strand, within LRK53_RS02505 at 574.415 kb on - strand, within LRK53_RS02505 at 574.415 kb on - strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.420 kb on + strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.421 kb on - strand, within LRK53_RS02505 at 574.465 kb on + strand, within LRK53_RS02505 at 574.465 kb on + strand, within LRK53_RS02505 at 574.465 kb on + strand, within LRK53_RS02505 at 574.466 kb on - strand, within LRK53_RS02505 at 574.466 kb on - strand, within LRK53_RS02505 at 574.466 kb on - strand, within LRK53_RS02505 at 574.466 kb on - strand, within LRK53_RS02505 at 574.500 kb on + strand, within LRK53_RS02505 at 574.500 kb on + strand, within LRK53_RS02505 at 574.500 kb on + strand, within LRK53_RS02505 at 574.501 kb on - strand, within LRK53_RS02505 at 574.501 kb on - strand, within LRK53_RS02505 at 574.501 kb on - strand, within LRK53_RS02505 at 574.513 kb on + strand, within LRK53_RS02505 at 574.513 kb on + strand, within LRK53_RS02505 at 574.514 kb on - strand, within LRK53_RS02505 at 574.514 kb on - strand, within LRK53_RS02505 at 574.759 kb on + strand, within LRK53_RS02505 at 574.759 kb on + strand, within LRK53_RS02505 at 574.759 kb on + strand, within LRK53_RS02505 at 574.760 kb on - strand, within LRK53_RS02505 at 574.760 kb on - strand, within LRK53_RS02505 at 574.804 kb on - strand at 574.858 kb on - strand at 574.858 kb on - strand at 574.858 kb on - strand at 574.875 kb on + strand at 574.876 kb on - strand at 574.876 kb on - strand at 574.876 kb on - strand at 574.876 kb on - strand at 574.876 kb on - strand at 574.881 kb on + strand at 574.881 kb on + strand at 574.881 kb on + strand at 574.881 kb on + strand at 574.881 kb on + strand at 574.881 kb on + strand at 574.881 kb on + strand at 574.881 kb on + strand at 574.882 kb on - strand at 574.882 kb on - strand at 574.882 kb on - strand at 574.882 kb on - strand at 574.882 kb on - strand at 574.920 kb on - strand at 574.944 kb on + strand at 574.944 kb on + strand at 574.944 kb on + strand at 574.944 kb on + strand at 574.945 kb on - strand at 574.958 kb on + strand at 574.958 kb on + strand at 574.958 kb on + strand at 574.958 kb on + strand at 574.958 kb on + strand at 574.958 kb on + strand at 574.959 kb on - strand at 574.959 kb on - strand at 574.959 kb on - strand at 574.959 kb on - strand at 575.091 kb on + strand, within LRK53_RS02510 at 575.091 kb on + strand, within LRK53_RS02510 at 575.091 kb on + strand, within LRK53_RS02510 at 575.091 kb on + strand, within LRK53_RS02510 at 575.092 kb on - strand, within LRK53_RS02510 at 575.092 kb on - strand, within LRK53_RS02510 at 575.092 kb on - strand, within LRK53_RS02510
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 572,567 - -1.2 572,608 + -0.8 572,608 + -0.0 572,608 + -0.1 572,608 + -1.1 572,608 + -1.1 572,609 - +2.9 572,609 - +0.3 572,609 - -1.8 572,609 - +1.1 572,609 - +0.3 572,609 - -2.0 572,614 + +0.2 572,614 + -0.5 572,614 + +0.6 572,615 - -1.7 572,615 - -0.5 572,615 - +2.2 572,615 - +0.6 572,615 - -1.4 572,615 - -0.1 572,615 - -0.1 572,713 + +0.7 572,713 + +0.2 572,714 - -1.1 572,801 + -1.1 572,802 - -0.8 572,802 - -0.6 572,802 - -0.8 573,386 - +1.4 573,386 - -0.8 573,463 + -1.9 573,503 + -2.3 573,503 + -1.0 573,503 + +0.2 573,503 + -2.1 573,538 + -0.1 573,538 + -0.4 573,538 + -2.0 573,539 - -0.3 573,539 - -0.4 573,561 + LRK53_RS02500 0.11 -0.7 573,561 + LRK53_RS02500 0.11 -1.1 573,561 + LRK53_RS02500 0.11 -0.8 573,561 + LRK53_RS02500 0.11 -0.3 573,561 + LRK53_RS02500 0.11 -0.8 573,561 + LRK53_RS02500 0.11 -1.2 573,561 + LRK53_RS02500 0.11 +0.9 573,561 + LRK53_RS02500 0.11 -0.9 573,562 - LRK53_RS02500 0.11 -2.5 573,562 - LRK53_RS02500 0.11 +2.3 573,562 - LRK53_RS02500 0.11 -0.4 573,562 - LRK53_RS02500 0.11 -0.4 573,562 - LRK53_RS02500 0.11 +0.1 573,562 - LRK53_RS02500 0.11 +1.7 573,562 - LRK53_RS02500 0.11 -0.2 573,993 + LRK53_RS02500 0.80 -0.0 573,993 + LRK53_RS02500 0.80 -0.7 573,993 + LRK53_RS02500 0.80 -1.3 573,993 + LRK53_RS02500 0.80 -1.2 573,993 + LRK53_RS02500 0.80 +0.1 573,993 + LRK53_RS02500 0.80 -1.1 573,993 + LRK53_RS02500 0.80 -1.3 573,993 + LRK53_RS02500 0.80 -0.6 573,993 + LRK53_RS02500 0.80 -1.3 573,993 + LRK53_RS02500 0.80 -1.1 573,993 + LRK53_RS02500 0.80 -1.1 573,994 - LRK53_RS02500 0.80 -1.1 573,994 - LRK53_RS02500 0.80 -1.2 573,994 - LRK53_RS02500 0.80 -1.7 573,994 - LRK53_RS02500 0.80 -0.7 573,994 - LRK53_RS02500 0.80 -0.4 573,994 - LRK53_RS02500 0.80 -3.0 573,994 - LRK53_RS02500 0.80 -2.4 573,994 - LRK53_RS02500 0.80 +2.5 574,140 + +0.2 574,140 + +0.5 574,140 + -1.0 574,140 + -1.0 574,141 - -0.3 574,141 - -1.8 574,141 - +0.2 574,146 + -0.7 574,146 + -1.8 574,146 + +0.4 574,146 + -1.1 574,146 + -3.1 574,146 + -0.9 574,146 + +1.0 574,146 + +0.1 574,146 + -0.3 574,146 + +0.1 574,146 + +1.2 574,146 + -0.9 574,146 + -0.0 574,147 - +1.6 574,147 - -1.1 574,147 - -1.0 574,147 - -1.0 574,147 - -0.5 574,147 - -1.4 574,147 - +1.2 574,167 + -0.3 574,167 + -1.9 574,167 + -0.7 574,167 + +0.0 574,168 - -2.0 574,407 + LRK53_RS02505 0.39 -0.4 574,407 + LRK53_RS02505 0.39 -0.4 574,407 + LRK53_RS02505 0.39 -2.8 574,407 + LRK53_RS02505 0.39 -1.0 574,407 + LRK53_RS02505 0.39 -1.3 574,407 + LRK53_RS02505 0.39 -0.5 574,407 + LRK53_RS02505 0.39 -0.1 574,407 + LRK53_RS02505 0.39 -2.3 574,407 - LRK53_RS02505 0.39 +0.3 574,408 - LRK53_RS02505 0.39 -0.5 574,408 - LRK53_RS02505 0.39 -1.9 574,408 - LRK53_RS02505 0.39 +0.6 574,408 - LRK53_RS02505 0.39 -0.5 574,408 - LRK53_RS02505 0.39 -0.5 574,408 - LRK53_RS02505 0.39 -0.8 574,414 + LRK53_RS02505 0.40 +1.7 574,414 + LRK53_RS02505 0.40 -0.7 574,414 + LRK53_RS02505 0.40 +0.1 574,414 + LRK53_RS02505 0.40 -0.3 574,415 - LRK53_RS02505 0.40 +1.0 574,415 - LRK53_RS02505 0.40 +0.8 574,415 - LRK53_RS02505 0.40 +0.3 574,415 - LRK53_RS02505 0.40 +1.9 574,415 - LRK53_RS02505 0.40 +0.1 574,415 - LRK53_RS02505 0.40 -0.1 574,420 + LRK53_RS02505 0.41 -0.3 574,420 + LRK53_RS02505 0.41 +0.3 574,420 + LRK53_RS02505 0.41 +0.9 574,420 + LRK53_RS02505 0.41 -0.2 574,420 + LRK53_RS02505 0.41 -0.2 574,420 + LRK53_RS02505 0.41 +0.1 574,420 + LRK53_RS02505 0.41 -1.3 574,420 + LRK53_RS02505 0.41 +0.0 574,420 + LRK53_RS02505 0.41 -2.2 574,420 + LRK53_RS02505 0.41 -0.0 574,420 + LRK53_RS02505 0.41 +2.7 574,420 + LRK53_RS02505 0.41 -1.0 574,420 + LRK53_RS02505 0.41 -0.3 574,420 + LRK53_RS02505 0.41 -0.9 574,420 + LRK53_RS02505 0.41 -0.3 574,420 + LRK53_RS02505 0.41 -0.1 574,421 - LRK53_RS02505 0.41 +0.3 574,421 - LRK53_RS02505 0.41 -1.3 574,421 - LRK53_RS02505 0.41 +0.9 574,421 - LRK53_RS02505 0.41 +0.8 574,421 - LRK53_RS02505 0.41 -1.5 574,421 - LRK53_RS02505 0.41 -1.1 574,421 - LRK53_RS02505 0.41 -0.4 574,421 - LRK53_RS02505 0.41 -0.8 574,421 - LRK53_RS02505 0.41 -0.2 574,421 - LRK53_RS02505 0.41 +0.7 574,421 - LRK53_RS02505 0.41 +0.1 574,465 + LRK53_RS02505 0.47 +0.1 574,465 + LRK53_RS02505 0.47 -1.9 574,465 + LRK53_RS02505 0.47 -2.1 574,466 - LRK53_RS02505 0.47 +1.3 574,466 - LRK53_RS02505 0.47 -1.3 574,466 - LRK53_RS02505 0.47 +0.1 574,466 - LRK53_RS02505 0.47 +0.1 574,500 + LRK53_RS02505 0.52 -0.8 574,500 + LRK53_RS02505 0.52 +1.6 574,500 + LRK53_RS02505 0.52 -0.1 574,501 - LRK53_RS02505 0.52 +0.6 574,501 - LRK53_RS02505 0.52 -0.9 574,501 - LRK53_RS02505 0.52 +2.7 574,513 + LRK53_RS02505 0.54 -0.7 574,513 + LRK53_RS02505 0.54 +0.5 574,514 - LRK53_RS02505 0.54 -0.7 574,514 - LRK53_RS02505 0.54 -0.1 574,759 + LRK53_RS02505 0.89 +0.3 574,759 + LRK53_RS02505 0.89 -0.5 574,759 + LRK53_RS02505 0.89 -0.7 574,760 - LRK53_RS02505 0.89 +1.0 574,760 - LRK53_RS02505 0.89 -0.4 574,804 - -0.1 574,858 - +0.5 574,858 - -1.2 574,858 - -0.8 574,875 + -2.1 574,876 - +0.6 574,876 - -1.3 574,876 - +0.9 574,876 - -0.4 574,876 - -0.7 574,881 + -2.1 574,881 + -0.1 574,881 + -2.4 574,881 + +0.5 574,881 + -0.5 574,881 + -0.4 574,881 + +2.2 574,881 + -2.1 574,882 - -1.4 574,882 - +1.6 574,882 - +1.0 574,882 - -0.1 574,882 - +0.3 574,920 - -2.3 574,944 + -0.8 574,944 + +0.2 574,944 + -1.5 574,944 + -0.2 574,945 - -1.7 574,958 + +2.6 574,958 + +0.3 574,958 + +2.0 574,958 + -0.9 574,958 + -1.3 574,958 + +0.6 574,959 - -1.7 574,959 - -0.6 574,959 - -1.6 574,959 - +0.3 575,091 + LRK53_RS02510 0.19 -0.1 575,091 + LRK53_RS02510 0.19 +0.2 575,091 + LRK53_RS02510 0.19 -0.8 575,091 + LRK53_RS02510 0.19 -0.6 575,092 - LRK53_RS02510 0.19 +0.1 575,092 - LRK53_RS02510 0.19 -2.3 575,092 - LRK53_RS02510 0.19 -0.7
Or see this region's nucleotide sequence