Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02325 and LRK53_RS02330 are separated by 13 nucleotides LRK53_RS02330 and LRK53_RS02335 are separated by 112 nucleotides LRK53_RS02335 and LRK53_RS02340 overlap by 23 nucleotides LRK53_RS02340 and LRK53_RS02345 overlap by 8 nucleotides
LRK53_RS02325: LRK53_RS02325 - diaminopimelate epimerase, at 536,137 to 536,982
_RS02325
LRK53_RS02330: LRK53_RS02330 - lipoprotein, at 536,996 to 537,175
_RS02330
LRK53_RS02335: LRK53_RS02335 - hypothetical protein, at 537,288 to 537,977
_RS02335
LRK53_RS02340: LRK53_RS02340 - isopentenyl-diphosphate Delta-isomerase, at 537,955 to 538,542
_RS02340
LRK53_RS02345: LRK53_RS02345 - hydroxymethylglutaryl-CoA reductase, degradative, at 538,535 to 540,874
_RS02345
Position (kb) 537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.206 kb on - strand at 537.206 kb on - strand at 537.206 kb on - strand at 537.206 kb on - strand at 537.253 kb on + strand at 537.253 kb on + strand at 537.253 kb on + strand at 537.253 kb on + strand at 537.253 kb on + strand at 537.683 kb on - strand, within LRK53_RS02335 at 537.683 kb on - strand, within LRK53_RS02335 at 537.693 kb on + strand, within LRK53_RS02335 at 537.813 kb on + strand, within LRK53_RS02335 at 538.151 kb on + strand, within LRK53_RS02340 at 538.151 kb on + strand, within LRK53_RS02340 at 538.151 kb on + strand, within LRK53_RS02340 at 538.151 kb on + strand, within LRK53_RS02340 at 538.152 kb on - strand, within LRK53_RS02340 at 538.203 kb on - strand, within LRK53_RS02340 at 538.220 kb on + strand, within LRK53_RS02340 at 538.221 kb on - strand, within LRK53_RS02340 at 538.221 kb on - strand, within LRK53_RS02340 at 538.623 kb on - strand at 538.874 kb on + strand, within LRK53_RS02345 at 538.875 kb on - strand, within LRK53_RS02345 at 538.875 kb on - strand, within LRK53_RS02345
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 537,203 + -1.6 537,203 + -0.5 537,203 + +1.1 537,203 + -0.7 537,203 + -0.9 537,203 + -0.3 537,203 + -0.4 537,203 + +0.0 537,203 + -2.1 537,203 + -0.1 537,203 + +1.7 537,203 + +2.9 537,203 + -0.4 537,203 + -2.4 537,203 + +0.3 537,203 + -2.0 537,203 + +1.1 537,203 + -0.3 537,203 + -0.3 537,203 + -2.7 537,203 + +0.5 537,203 + +1.3 537,203 + -0.5 537,203 + -0.6 537,204 - -1.1 537,204 - -0.5 537,204 - +0.6 537,204 - -1.0 537,204 - -1.0 537,204 - +0.3 537,204 - -0.2 537,205 + +0.1 537,205 + -0.3 537,205 + -1.8 537,205 + -3.2 537,205 + -1.0 537,205 + -1.2 537,205 + +0.2 537,206 - -0.1 537,206 - -1.7 537,206 - +0.6 537,206 - +0.6 537,253 + +0.1 537,253 + -0.2 537,253 + -1.2 537,253 + +1.2 537,253 + -0.8 537,683 - LRK53_RS02335 0.57 +0.1 537,683 - LRK53_RS02335 0.57 -1.3 537,693 + LRK53_RS02335 0.59 +0.3 537,813 + LRK53_RS02335 0.76 +0.1 538,151 + LRK53_RS02340 0.33 -2.1 538,151 + LRK53_RS02340 0.33 +0.3 538,151 + LRK53_RS02340 0.33 -0.9 538,151 + LRK53_RS02340 0.33 +0.5 538,152 - LRK53_RS02340 0.34 +0.6 538,203 - LRK53_RS02340 0.42 -0.5 538,220 + LRK53_RS02340 0.45 -1.7 538,221 - LRK53_RS02340 0.45 +1.0 538,221 - LRK53_RS02340 0.45 -0.4 538,623 - -0.2 538,874 + LRK53_RS02345 0.14 +1.5 538,875 - LRK53_RS02345 0.15 -0.4 538,875 - LRK53_RS02345 0.15 -1.1
Or see this region's nucleotide sequence