Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02285 and LRK53_RS02290 are separated by 160 nucleotides LRK53_RS02290 and LRK53_RS02295 are separated by 0 nucleotides
LRK53_RS02285: LRK53_RS02285 - oxygen-dependent coproporphyrinogen oxidase, at 528,165 to 529,067
_RS02285
LRK53_RS02290: LRK53_RS02290 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 529,228 to 530,571
_RS02290
LRK53_RS02295: LRK53_RS02295 - ribokinase, at 530,572 to 531,468
_RS02295
Position (kb) 529
530
531 Strain fitness (log2 ratio) -2
-1
0
1
2 at 528.589 kb on + strand, within LRK53_RS02285 at 528.589 kb on + strand, within LRK53_RS02285 at 528.675 kb on + strand, within LRK53_RS02285 at 528.675 kb on + strand, within LRK53_RS02285 at 528.675 kb on + strand, within LRK53_RS02285 at 528.681 kb on + strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.804 kb on + strand, within LRK53_RS02285 at 528.805 kb on - strand, within LRK53_RS02285 at 528.840 kb on + strand, within LRK53_RS02285 at 528.886 kb on - strand, within LRK53_RS02285 at 528.907 kb on - strand, within LRK53_RS02285 at 529.035 kb on - strand at 529.035 kb on - strand at 529.041 kb on + strand at 529.041 kb on + strand at 529.042 kb on - strand at 529.042 kb on - strand at 529.042 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.185 kb on + strand at 529.185 kb on + strand at 529.185 kb on + strand at 529.447 kb on + strand, within LRK53_RS02290 at 529.447 kb on + strand, within LRK53_RS02290 at 529.447 kb on + strand, within LRK53_RS02290 at 529.447 kb on + strand, within LRK53_RS02290 at 529.448 kb on - strand, within LRK53_RS02290 at 529.448 kb on - strand, within LRK53_RS02290 at 529.734 kb on + strand, within LRK53_RS02290 at 529.735 kb on - strand, within LRK53_RS02290 at 529.859 kb on + strand, within LRK53_RS02290 at 529.977 kb on + strand, within LRK53_RS02290 at 530.515 kb on + strand at 530.516 kb on - strand at 530.516 kb on - strand at 530.676 kb on + strand, within LRK53_RS02295 at 530.677 kb on - strand, within LRK53_RS02295 at 530.677 kb on - strand, within LRK53_RS02295 at 530.836 kb on + strand, within LRK53_RS02295 at 530.836 kb on + strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.934 kb on - strand, within LRK53_RS02295 at 530.934 kb on - strand, within LRK53_RS02295 at 530.934 kb on - strand, within LRK53_RS02295 at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.510 kb on + strand at 531.511 kb on - strand at 531.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 528,589 + LRK53_RS02285 0.47 -0.4 528,589 + LRK53_RS02285 0.47 +0.1 528,675 + LRK53_RS02285 0.56 +0.1 528,675 + LRK53_RS02285 0.56 +0.1 528,675 + LRK53_RS02285 0.56 +0.1 528,681 + LRK53_RS02285 0.57 +0.1 528,726 + LRK53_RS02285 0.62 -0.4 528,726 + LRK53_RS02285 0.62 -0.5 528,726 + LRK53_RS02285 0.62 +2.1 528,804 + LRK53_RS02285 0.71 +0.8 528,805 - LRK53_RS02285 0.71 -0.1 528,840 + LRK53_RS02285 0.75 +0.1 528,886 - LRK53_RS02285 0.80 +0.1 528,907 - LRK53_RS02285 0.82 +0.9 529,035 - +0.3 529,035 - -0.0 529,041 + +1.7 529,041 + -0.8 529,042 - -0.5 529,042 - -2.0 529,042 - +0.2 529,066 - +0.6 529,066 - +2.1 529,066 - -0.5 529,066 - +0.1 529,066 - -0.9 529,066 - -1.1 529,185 + +0.7 529,185 + -2.5 529,185 + +0.6 529,447 + LRK53_RS02290 0.16 -0.6 529,447 + LRK53_RS02290 0.16 -0.5 529,447 + LRK53_RS02290 0.16 -0.1 529,447 + LRK53_RS02290 0.16 -1.2 529,448 - LRK53_RS02290 0.16 +0.6 529,448 - LRK53_RS02290 0.16 -0.9 529,734 + LRK53_RS02290 0.38 -1.1 529,735 - LRK53_RS02290 0.38 -0.7 529,859 + LRK53_RS02290 0.47 -2.1 529,977 + LRK53_RS02290 0.56 +0.8 530,515 + -0.5 530,516 - -0.1 530,516 - +0.8 530,676 + LRK53_RS02295 0.12 +0.2 530,677 - LRK53_RS02295 0.12 +0.8 530,677 - LRK53_RS02295 0.12 +0.8 530,836 + LRK53_RS02295 0.29 -0.3 530,836 + LRK53_RS02295 0.29 +1.9 530,837 - LRK53_RS02295 0.30 +0.6 530,837 - LRK53_RS02295 0.30 -0.3 530,837 - LRK53_RS02295 0.30 +0.8 530,837 - LRK53_RS02295 0.30 -0.8 530,933 + LRK53_RS02295 0.40 +0.4 530,933 + LRK53_RS02295 0.40 +1.1 530,933 + LRK53_RS02295 0.40 +0.2 530,934 - LRK53_RS02295 0.40 +0.7 530,934 - LRK53_RS02295 0.40 +0.3 530,934 - LRK53_RS02295 0.40 +0.8 531,435 + -0.5 531,435 + -0.4 531,435 + -1.3 531,435 + -0.7 531,435 + -1.7 531,435 + +0.9 531,435 + -0.3 531,436 - -2.3 531,436 - +1.3 531,436 - -1.1 531,436 - +2.1 531,436 - -1.2 531,436 - -1.0 531,436 - -1.3 531,436 - -0.5 531,436 - -0.4 531,436 - -0.9 531,436 - +0.0 531,510 + -0.4 531,511 - +0.1 531,511 - -1.3
Or see this region's nucleotide sequence