Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02255

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02245 and LRK53_RS02250 overlap by 17 nucleotidesLRK53_RS02250 and LRK53_RS02255 are separated by 19 nucleotidesLRK53_RS02255 and LRK53_RS02260 are separated by 148 nucleotidesLRK53_RS02260 and LRK53_RS02265 overlap by 4 nucleotides LRK53_RS02245: LRK53_RS02245 - MMPL family transporter, at 520,338 to 522,656 _RS02245 LRK53_RS02250: LRK53_RS02250 - phosphotransferase, at 522,640 to 523,074 _RS02250 LRK53_RS02255: LRK53_RS02255 - 3-oxoacyl-ACP reductase FabG, at 523,094 to 523,831 _RS02255 LRK53_RS02260: LRK53_RS02260 - glycosyltransferase family 2 protein, at 523,980 to 524,765 _RS02260 LRK53_RS02265: LRK53_RS02265 - beta-ketoacyl synthase chain length factor, at 524,762 to 525,556 _RS02265 Position (kb) 523 524Strain fitness (log2 ratio) -2 -1 0 1 2 3at 522.222 kb on + strand, within LRK53_RS02245at 522.222 kb on + strand, within LRK53_RS02245at 522.438 kb on + strandat 522.438 kb on + strandat 522.439 kb on - strandat 522.439 kb on - strandat 522.439 kb on - strandat 522.439 kb on - strandat 522.815 kb on - strand, within LRK53_RS02250at 522.878 kb on + strand, within LRK53_RS02250at 522.878 kb on + strand, within LRK53_RS02250at 522.878 kb on + strand, within LRK53_RS02250at 522.878 kb on + strand, within LRK53_RS02250at 522.878 kb on + strand, within LRK53_RS02250at 522.879 kb on - strand, within LRK53_RS02250at 522.879 kb on - strand, within LRK53_RS02250at 522.879 kb on - strand, within LRK53_RS02250at 522.879 kb on - strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.928 kb on + strand, within LRK53_RS02250at 522.929 kb on - strand, within LRK53_RS02250at 522.929 kb on - strand, within LRK53_RS02250at 522.929 kb on - strand, within LRK53_RS02250at 522.929 kb on - strand, within LRK53_RS02250at 522.929 kb on - strand, within LRK53_RS02250at 522.929 kb on - strand, within LRK53_RS02250at 522.929 kb on - strand, within LRK53_RS02250at 522.929 kb on - strand, within LRK53_RS02250at 522.976 kb on + strand, within LRK53_RS02250at 522.977 kb on - strand, within LRK53_RS02250at 522.977 kb on - strand, within LRK53_RS02250at 523.000 kb on + strand, within LRK53_RS02250at 523.000 kb on + strand, within LRK53_RS02250at 523.001 kb on - strand, within LRK53_RS02250at 523.001 kb on - strand, within LRK53_RS02250at 523.001 kb on - strand, within LRK53_RS02250at 523.001 kb on - strand, within LRK53_RS02250at 523.001 kb on - strand, within LRK53_RS02250at 523.001 kb on - strand, within LRK53_RS02250at 523.559 kb on + strand, within LRK53_RS02255at 523.559 kb on + strand, within LRK53_RS02255at 523.559 kb on + strand, within LRK53_RS02255at 523.559 kb on + strand, within LRK53_RS02255at 523.560 kb on - strand, within LRK53_RS02255at 523.560 kb on - strand, within LRK53_RS02255at 523.560 kb on - strand, within LRK53_RS02255at 523.560 kb on - strand, within LRK53_RS02255at 523.560 kb on - strand, within LRK53_RS02255at 523.787 kb on + strandat 523.787 kb on + strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.872 kb on + strandat 523.872 kb on + strandat 523.872 kb on + strandat 523.872 kb on + strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.961 kb on + strandat 524.060 kb on - strand, within LRK53_RS02260at 524.080 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.167 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.522 kb on - strand, within LRK53_RS02260at 524.522 kb on - strand, within LRK53_RS02260at 524.522 kb on - strand, within LRK53_RS02260at 524.785 kb on + strandat 524.785 kb on + strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.800 kb on + strandat 524.800 kb on + strandat 524.800 kb on + strandat 524.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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522,222 + LRK53_RS02245 0.81 +0.7
522,222 + LRK53_RS02245 0.81 -1.5
522,438 + -0.0
522,438 + +0.3
522,439 - +0.8
522,439 - +3.2
522,439 - -0.4
522,439 - +0.1
522,815 - LRK53_RS02250 0.40 +0.2
522,878 + LRK53_RS02250 0.55 -0.6
522,878 + LRK53_RS02250 0.55 -0.5
522,878 + LRK53_RS02250 0.55 -2.2
522,878 + LRK53_RS02250 0.55 +1.3
522,878 + LRK53_RS02250 0.55 -1.9
522,879 - LRK53_RS02250 0.55 -1.7
522,879 - LRK53_RS02250 0.55 -0.4
522,879 - LRK53_RS02250 0.55 -0.2
522,879 - LRK53_RS02250 0.55 +0.1
522,928 + LRK53_RS02250 0.66 -0.6
522,928 + LRK53_RS02250 0.66 -0.9
522,928 + LRK53_RS02250 0.66 -0.0
522,928 + LRK53_RS02250 0.66 -1.0
522,928 + LRK53_RS02250 0.66 +0.2
522,928 + LRK53_RS02250 0.66 -0.7
522,928 + LRK53_RS02250 0.66 +0.7
522,928 + LRK53_RS02250 0.66 -0.5
522,928 + LRK53_RS02250 0.66 +0.4
522,928 + LRK53_RS02250 0.66 -0.5
522,928 + LRK53_RS02250 0.66 +1.2
522,928 + LRK53_RS02250 0.66 -0.6
522,928 + LRK53_RS02250 0.66 +0.1
522,929 - LRK53_RS02250 0.66 +0.4
522,929 - LRK53_RS02250 0.66 +0.1
522,929 - LRK53_RS02250 0.66 -0.1
522,929 - LRK53_RS02250 0.66 -0.5
522,929 - LRK53_RS02250 0.66 +0.2
522,929 - LRK53_RS02250 0.66 +1.5
522,929 - LRK53_RS02250 0.66 -0.5
522,929 - LRK53_RS02250 0.66 -0.0
522,976 + LRK53_RS02250 0.77 -0.7
522,977 - LRK53_RS02250 0.77 +0.2
522,977 - LRK53_RS02250 0.77 +0.6
523,000 + LRK53_RS02250 0.83 -0.9
523,000 + LRK53_RS02250 0.83 -0.5
523,001 - LRK53_RS02250 0.83 -0.3
523,001 - LRK53_RS02250 0.83 -2.3
523,001 - LRK53_RS02250 0.83 -0.7
523,001 - LRK53_RS02250 0.83 -0.1
523,001 - LRK53_RS02250 0.83 +0.2
523,001 - LRK53_RS02250 0.83 -0.2
523,559 + LRK53_RS02255 0.63 -1.7
523,559 + LRK53_RS02255 0.63 -0.5
523,559 + LRK53_RS02255 0.63 -2.0
523,559 + LRK53_RS02255 0.63 +0.9
523,560 - LRK53_RS02255 0.63 -2.2
523,560 - LRK53_RS02255 0.63 -1.6
523,560 - LRK53_RS02255 0.63 +2.5
523,560 - LRK53_RS02255 0.63 +0.6
523,560 - LRK53_RS02255 0.63 -1.0
523,787 + -0.1
523,787 + +1.3
523,788 - -0.4
523,788 - -1.8
523,788 - +0.3
523,788 - -1.5
523,788 - -0.1
523,788 - +1.5
523,788 - +1.6
523,788 - -1.8
523,872 + -0.8
523,872 + -0.1
523,872 + +1.3
523,872 + +0.3
523,873 - +0.8
523,873 - -0.4
523,873 - +0.1
523,873 - +0.2
523,873 - -1.5
523,873 - +1.9
523,873 - +1.6
523,873 - -0.2
523,873 - -0.2
523,961 + +0.1
524,060 - LRK53_RS02260 0.10 -0.4
524,080 + LRK53_RS02260 0.13 -0.5
524,104 + LRK53_RS02260 0.16 -1.8
524,104 + LRK53_RS02260 0.16 -2.2
524,104 + LRK53_RS02260 0.16 +2.4
524,104 + LRK53_RS02260 0.16 -1.2
524,104 + LRK53_RS02260 0.16 -0.2
524,104 + LRK53_RS02260 0.16 -1.3
524,104 + LRK53_RS02260 0.16 +1.0
524,104 + LRK53_RS02260 0.16 +0.1
524,104 + LRK53_RS02260 0.16 +0.6
524,104 + LRK53_RS02260 0.16 -0.1
524,104 + LRK53_RS02260 0.16 +1.2
524,104 + LRK53_RS02260 0.16 +0.9
524,104 + LRK53_RS02260 0.16 -0.3
524,105 - LRK53_RS02260 0.16 -2.0
524,105 - LRK53_RS02260 0.16 -0.9
524,105 - LRK53_RS02260 0.16 -0.1
524,105 - LRK53_RS02260 0.16 -0.1
524,105 - LRK53_RS02260 0.16 -0.5
524,105 - LRK53_RS02260 0.16 -0.4
524,105 - LRK53_RS02260 0.16 -1.7
524,105 - LRK53_RS02260 0.16 +0.9
524,105 - LRK53_RS02260 0.16 -0.8
524,105 - LRK53_RS02260 0.16 -1.4
524,105 - LRK53_RS02260 0.16 +0.7
524,105 - LRK53_RS02260 0.16 +2.9
524,105 - LRK53_RS02260 0.16 -1.2
524,167 + LRK53_RS02260 0.24 +1.3
524,521 + LRK53_RS02260 0.69 +1.1
524,521 + LRK53_RS02260 0.69 -0.1
524,521 + LRK53_RS02260 0.69 +0.6
524,521 + LRK53_RS02260 0.69 +0.9
524,521 + LRK53_RS02260 0.69 +0.8
524,521 + LRK53_RS02260 0.69 +0.3
524,521 + LRK53_RS02260 0.69 -1.8
524,521 + LRK53_RS02260 0.69 -0.1
524,522 - LRK53_RS02260 0.69 +0.0
524,522 - LRK53_RS02260 0.69 -0.1
524,522 - LRK53_RS02260 0.69 +1.3
524,785 + -1.7
524,785 + -1.7
524,786 - -0.1
524,786 - +0.3
524,786 - +0.6
524,786 - +0.6
524,786 - +0.9
524,800 + +0.5
524,800 + -1.4
524,800 + -0.2
524,801 - +1.0

Or see this region's nucleotide sequence