Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01640

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS01635 and LRK53_RS01640 are separated by 63 nucleotidesLRK53_RS01640 and LRK53_RS01645 are separated by 237 nucleotidesLRK53_RS01645 and LRK53_RS01650 are separated by 131 nucleotides LRK53_RS01635: LRK53_RS01635 - DMT family transporter, at 386,321 to 387,217 _RS01635 LRK53_RS01640: LRK53_RS01640 - divalent-cation tolerance protein CutA, at 387,281 to 387,625 _RS01640 LRK53_RS01645: LRK53_RS01645 - co-chaperone GroES, at 387,863 to 388,156 _RS01645 LRK53_RS01650: LRK53_RS01650 - chaperonin GroEL, at 388,288 to 389,937 _RS01650 Position (kb) 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 386.283 kb on + strandat 386.284 kb on - strandat 386.284 kb on - strandat 386.284 kb on - strandat 386.314 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.323 kb on - strandat 386.323 kb on - strandat 386.323 kb on - strandat 386.487 kb on + strand, within LRK53_RS01635at 386.547 kb on + strand, within LRK53_RS01635at 386.547 kb on + strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.739 kb on + strand, within LRK53_RS01635at 386.739 kb on + strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 387.201 kb on + strandat 387.201 kb on + strandat 387.201 kb on + strandat 387.202 kb on - strandat 387.202 kb on - strandat 387.255 kb on + strandat 387.255 kb on + strandat 387.255 kb on + strandat 387.330 kb on + strand, within LRK53_RS01640at 387.330 kb on + strand, within LRK53_RS01640at 387.330 kb on + strand, within LRK53_RS01640at 387.330 kb on + strand, within LRK53_RS01640at 387.382 kb on - strand, within LRK53_RS01640at 387.382 kb on - strand, within LRK53_RS01640at 387.489 kb on + strand, within LRK53_RS01640at 387.489 kb on + strand, within LRK53_RS01640at 387.490 kb on - strand, within LRK53_RS01640at 387.490 kb on - strand, within LRK53_RS01640at 387.490 kb on - strand, within LRK53_RS01640at 387.490 kb on - strand, within LRK53_RS01640at 387.594 kb on + strandat 387.594 kb on + strandat 387.594 kb on + strandat 387.595 kb on - strandat 387.595 kb on - strandat 387.637 kb on - strandat 387.637 kb on - strandat 387.714 kb on + strandat 387.714 kb on + strandat 387.714 kb on + strandat 387.714 kb on + strandat 387.714 kb on + strandat 387.714 kb on + strandat 387.715 kb on - strandat 387.715 kb on - strandat 387.715 kb on - strandat 387.715 kb on - strandat 387.715 kb on - strandat 387.715 kb on - strandat 387.715 kb on - strandat 388.154 kb on + strandat 388.154 kb on + strandat 388.154 kb on + strandat 388.154 kb on + strandat 388.154 kb on + strandat 388.154 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
remove
386,283 + +0.1
386,284 - -1.0
386,284 - -0.7
386,284 - -1.1
386,314 + -0.0
386,322 + -0.0
386,322 + -1.1
386,322 + -0.7
386,322 + +0.7
386,322 + +1.1
386,322 + -1.3
386,322 + -0.5
386,322 + +0.2
386,323 - +0.1
386,323 - -0.2
386,323 - +1.7
386,487 + LRK53_RS01635 0.19 +0.3
386,547 + LRK53_RS01635 0.25 +0.5
386,547 + LRK53_RS01635 0.25 -0.9
386,548 - LRK53_RS01635 0.25 -0.4
386,548 - LRK53_RS01635 0.25 +0.9
386,548 - LRK53_RS01635 0.25 +0.1
386,548 - LRK53_RS01635 0.25 +0.4
386,548 - LRK53_RS01635 0.25 +0.6
386,548 - LRK53_RS01635 0.25 -1.0
386,548 - LRK53_RS01635 0.25 +0.3
386,548 - LRK53_RS01635 0.25 +0.1
386,548 - LRK53_RS01635 0.25 -0.1
386,548 - LRK53_RS01635 0.25 -2.0
386,548 - LRK53_RS01635 0.25 -0.2
386,548 - LRK53_RS01635 0.25 -1.6
386,548 - LRK53_RS01635 0.25 -1.6
386,721 + LRK53_RS01635 0.45 -2.1
386,721 + LRK53_RS01635 0.45 -1.0
386,721 + LRK53_RS01635 0.45 -1.6
386,721 + LRK53_RS01635 0.45 -1.5
386,721 + LRK53_RS01635 0.45 -0.1
386,721 + LRK53_RS01635 0.45 +0.9
386,721 + LRK53_RS01635 0.45 +0.1
386,721 + LRK53_RS01635 0.45 +0.3
386,721 + LRK53_RS01635 0.45 -1.5
386,721 + LRK53_RS01635 0.45 +1.0
386,721 + LRK53_RS01635 0.45 -0.4
386,721 + LRK53_RS01635 0.45 -0.5
386,721 + LRK53_RS01635 0.45 -2.0
386,721 + LRK53_RS01635 0.45 -3.1
386,721 + LRK53_RS01635 0.45 -1.0
386,721 + LRK53_RS01635 0.45 -0.1
386,721 + LRK53_RS01635 0.45 +0.5
386,721 + LRK53_RS01635 0.45 +0.3
386,721 + LRK53_RS01635 0.45 -0.2
386,722 - LRK53_RS01635 0.45 -0.9
386,722 - LRK53_RS01635 0.45 +0.3
386,722 - LRK53_RS01635 0.45 +0.6
386,722 - LRK53_RS01635 0.45 +0.9
386,722 - LRK53_RS01635 0.45 +0.9
386,722 - LRK53_RS01635 0.45 -0.2
386,722 - LRK53_RS01635 0.45 -2.1
386,722 - LRK53_RS01635 0.45 +0.6
386,722 - LRK53_RS01635 0.45 -0.7
386,722 - LRK53_RS01635 0.45 +0.3
386,722 - LRK53_RS01635 0.45 -1.8
386,722 - LRK53_RS01635 0.45 -1.4
386,722 - LRK53_RS01635 0.45 +0.0
386,739 + LRK53_RS01635 0.47 +0.5
386,739 + LRK53_RS01635 0.47 -1.1
386,740 - LRK53_RS01635 0.47 -0.6
386,740 - LRK53_RS01635 0.47 -1.5
386,740 - LRK53_RS01635 0.47 -1.8
386,740 - LRK53_RS01635 0.47 -2.6
386,740 - LRK53_RS01635 0.47 -1.1
386,740 - LRK53_RS01635 0.47 -0.4
386,861 + LRK53_RS01635 0.60 +1.1
386,861 + LRK53_RS01635 0.60 -0.1
386,861 + LRK53_RS01635 0.60 -0.4
386,861 + LRK53_RS01635 0.60 -1.3
386,861 + LRK53_RS01635 0.60 +1.6
386,861 + LRK53_RS01635 0.60 +0.2
386,861 + LRK53_RS01635 0.60 +1.4
386,861 + LRK53_RS01635 0.60 +0.2
386,861 + LRK53_RS01635 0.60 -1.5
386,861 + LRK53_RS01635 0.60 +1.4
386,861 + LRK53_RS01635 0.60 +0.8
386,861 + LRK53_RS01635 0.60 -0.9
386,861 + LRK53_RS01635 0.60 -2.6
386,861 + LRK53_RS01635 0.60 -0.5
386,861 + LRK53_RS01635 0.60 -0.5
386,861 + LRK53_RS01635 0.60 -0.9
386,861 + LRK53_RS01635 0.60 +0.2
386,861 + LRK53_RS01635 0.60 -1.2
386,861 + LRK53_RS01635 0.60 -1.1
386,861 + LRK53_RS01635 0.60 -0.5
386,861 + LRK53_RS01635 0.60 +0.9
386,861 + LRK53_RS01635 0.60 -1.8
386,861 + LRK53_RS01635 0.60 +1.4
386,861 + LRK53_RS01635 0.60 -0.9
386,861 + LRK53_RS01635 0.60 -0.2
386,861 + LRK53_RS01635 0.60 -0.9
386,861 + LRK53_RS01635 0.60 -0.9
386,861 + LRK53_RS01635 0.60 -0.2
386,861 + LRK53_RS01635 0.60 -0.2
386,861 + LRK53_RS01635 0.60 -1.6
386,861 + LRK53_RS01635 0.60 -0.8
386,861 + LRK53_RS01635 0.60 +0.3
386,861 + LRK53_RS01635 0.60 -2.0
386,862 - LRK53_RS01635 0.60 -0.1
386,862 - LRK53_RS01635 0.60 -2.7
386,862 - LRK53_RS01635 0.60 -1.0
386,862 - LRK53_RS01635 0.60 -1.0
386,862 - LRK53_RS01635 0.60 -0.6
386,862 - LRK53_RS01635 0.60 -1.1
386,862 - LRK53_RS01635 0.60 +0.4
386,862 - LRK53_RS01635 0.60 -1.0
386,862 - LRK53_RS01635 0.60 -2.6
386,862 - LRK53_RS01635 0.60 -2.8
386,862 - LRK53_RS01635 0.60 -1.1
386,862 - LRK53_RS01635 0.60 +2.3
386,862 - LRK53_RS01635 0.60 -1.3
386,862 - LRK53_RS01635 0.60 -2.6
386,862 - LRK53_RS01635 0.60 -0.4
386,862 - LRK53_RS01635 0.60 +0.2
386,862 - LRK53_RS01635 0.60 -1.1
386,862 - LRK53_RS01635 0.60 +0.5
386,862 - LRK53_RS01635 0.60 +2.7
386,862 - LRK53_RS01635 0.60 +0.0
386,862 - LRK53_RS01635 0.60 -0.1
386,862 - LRK53_RS01635 0.60 -1.4
386,862 - LRK53_RS01635 0.60 -1.0
386,862 - LRK53_RS01635 0.60 -1.0
386,862 - LRK53_RS01635 0.60 -0.2
386,862 - LRK53_RS01635 0.60 +1.9
386,862 - LRK53_RS01635 0.60 -0.2
386,862 - LRK53_RS01635 0.60 +0.2
386,862 - LRK53_RS01635 0.60 -1.0
386,862 - LRK53_RS01635 0.60 -0.6
386,862 - LRK53_RS01635 0.60 +1.3
386,862 - LRK53_RS01635 0.60 -0.4
386,862 - LRK53_RS01635 0.60 +1.3
386,862 - LRK53_RS01635 0.60 +1.7
386,862 - LRK53_RS01635 0.60 -0.1
386,862 - LRK53_RS01635 0.60 -2.7
387,201 + +0.8
387,201 + +0.6
387,201 + +1.4
387,202 - -1.1
387,202 - -1.5
387,255 + -0.9
387,255 + +0.4
387,255 + -0.1
387,330 + LRK53_RS01640 0.14 -1.5
387,330 + LRK53_RS01640 0.14 -0.9
387,330 + LRK53_RS01640 0.14 +0.1
387,330 + LRK53_RS01640 0.14 -2.1
387,382 - LRK53_RS01640 0.29 -1.0
387,382 - LRK53_RS01640 0.29 -0.7
387,489 + LRK53_RS01640 0.60 -1.1
387,489 + LRK53_RS01640 0.60 +0.3
387,490 - LRK53_RS01640 0.61 +0.3
387,490 - LRK53_RS01640 0.61 -0.9
387,490 - LRK53_RS01640 0.61 +0.3
387,490 - LRK53_RS01640 0.61 +0.6
387,594 + -1.1
387,594 + -0.2
387,594 + -1.2
387,595 - -1.5
387,595 - +0.6
387,637 - +1.2
387,637 - -0.1
387,714 + +1.2
387,714 + -2.3
387,714 + -0.7
387,714 + -1.1
387,714 + -1.4
387,714 + +1.9
387,715 - +1.1
387,715 - -1.2
387,715 - -1.4
387,715 - -0.6
387,715 - +2.1
387,715 - -1.9
387,715 - +1.2
388,154 + -1.0
388,154 + -1.0
388,154 + -0.7
388,154 + +0.8
388,154 + +1.3
388,154 + -0.1

Or see this region's nucleotide sequence