Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01585 and LRK53_RS01590 are separated by 154 nucleotides LRK53_RS01590 and LRK53_RS01595 are separated by 156 nucleotides LRK53_RS01595 and LRK53_RS01600 are separated by 137 nucleotides
LRK53_RS01585: LRK53_RS01585 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 376,331 to 377,941
_RS01585
LRK53_RS01590: LRK53_RS01590 - Fis family transcriptional regulator, at 378,096 to 378,419
_RS01590
LRK53_RS01595: LRK53_RS01595 - DUF3426 domain-containing protein, at 378,576 to 379,406
_RS01595
LRK53_RS01600: LRK53_RS01600 - 50S ribosomal protein L11 methyltransferase, at 379,544 to 380,461
_RS01600
Position (kb) 378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 377.620 kb on - strand, within LRK53_RS01585 at 377.946 kb on + strand at 377.947 kb on - strand at 377.947 kb on - strand at 377.947 kb on - strand at 377.947 kb on - strand at 377.947 kb on - strand at 378.026 kb on + strand at 378.026 kb on + strand at 378.026 kb on + strand at 378.026 kb on + strand at 378.027 kb on - strand at 378.027 kb on - strand at 378.462 kb on - strand at 378.462 kb on - strand at 378.462 kb on - strand at 378.462 kb on - strand at 378.468 kb on - strand at 378.468 kb on - strand at 378.537 kb on - strand at 378.559 kb on - strand at 378.559 kb on - strand at 378.559 kb on - strand at 378.559 kb on - strand at 378.559 kb on - strand at 378.563 kb on - strand at 378.577 kb on + strand at 378.578 kb on - strand at 378.578 kb on - strand at 378.695 kb on - strand, within LRK53_RS01595 at 378.695 kb on - strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.054 kb on + strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.055 kb on - strand, within LRK53_RS01595 at 379.228 kb on + strand, within LRK53_RS01595 at 379.431 kb on - strand at 379.431 kb on - strand at 379.431 kb on - strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.432 kb on + strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.433 kb on - strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.469 kb on + strand at 379.470 kb on - strand at 379.470 kb on - strand at 379.470 kb on - strand at 379.470 kb on - strand at 379.510 kb on - strand at 379.620 kb on + strand at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.788 kb on + strand, within LRK53_RS01600 at 379.789 kb on - strand, within LRK53_RS01600 at 379.789 kb on - strand, within LRK53_RS01600 at 379.789 kb on - strand, within LRK53_RS01600 at 379.933 kb on - strand, within LRK53_RS01600 at 379.933 kb on - strand, within LRK53_RS01600 at 380.039 kb on + strand, within LRK53_RS01600 at 380.039 kb on + strand, within LRK53_RS01600 at 380.039 kb on + strand, within LRK53_RS01600 at 380.040 kb on - strand, within LRK53_RS01600 at 380.040 kb on - strand, within LRK53_RS01600 at 380.040 kb on - strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.103 kb on + strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.104 kb on - strand, within LRK53_RS01600 at 380.366 kb on + strand, within LRK53_RS01600
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 377,620 - LRK53_RS01585 0.80 +0.1 377,946 + +2.6 377,947 - -1.9 377,947 - +0.1 377,947 - -2.2 377,947 - +1.2 377,947 - -0.2 378,026 + -2.5 378,026 + +0.4 378,026 + -1.2 378,026 + -1.9 378,027 - -0.2 378,027 - -0.1 378,462 - -1.5 378,462 - -1.5 378,462 - -0.9 378,462 - -1.1 378,468 - -1.6 378,468 - +1.1 378,537 - -2.4 378,559 - -0.0 378,559 - +0.1 378,559 - -0.9 378,559 - +0.1 378,559 - -1.1 378,563 - +0.8 378,577 + -1.1 378,578 - -3.5 378,578 - -0.1 378,695 - LRK53_RS01595 0.14 -0.2 378,695 - LRK53_RS01595 0.14 +0.8 379,054 + LRK53_RS01595 0.58 -1.2 379,054 + LRK53_RS01595 0.58 -1.1 379,054 + LRK53_RS01595 0.58 +0.1 379,054 + LRK53_RS01595 0.58 -1.6 379,054 + LRK53_RS01595 0.58 -1.1 379,054 + LRK53_RS01595 0.58 -0.9 379,054 + LRK53_RS01595 0.58 -0.6 379,054 + LRK53_RS01595 0.58 -0.4 379,054 + LRK53_RS01595 0.58 -0.5 379,055 - LRK53_RS01595 0.58 -0.6 379,055 - LRK53_RS01595 0.58 -0.2 379,055 - LRK53_RS01595 0.58 -1.3 379,055 - LRK53_RS01595 0.58 -1.3 379,055 - LRK53_RS01595 0.58 +0.2 379,055 - LRK53_RS01595 0.58 -0.6 379,228 + LRK53_RS01595 0.78 -3.2 379,431 - -2.2 379,431 - +2.6 379,431 - +0.1 379,432 + +2.2 379,432 + +2.5 379,432 + -1.6 379,432 + +1.5 379,432 + +3.4 379,432 + -1.5 379,432 + -3.1 379,432 + -1.2 379,432 + +0.5 379,432 + -0.3 379,432 + -0.4 379,432 + +0.7 379,432 + -0.6 379,432 + +1.7 379,432 + -1.1 379,432 + -1.9 379,432 + +0.5 379,432 + +0.8 379,432 + -0.1 379,432 + +1.1 379,432 + -0.3 379,432 + +0.9 379,432 + -0.4 379,432 + -1.9 379,432 + -0.0 379,432 + +0.2 379,432 + -0.6 379,432 + +1.2 379,432 + -0.9 379,432 + -0.4 379,432 + +0.3 379,432 + -0.6 379,432 + +2.4 379,432 + +0.0 379,432 + -0.5 379,432 + +1.3 379,432 + -0.6 379,432 + -0.2 379,432 + -0.5 379,432 + -0.4 379,432 + -0.2 379,432 + +0.3 379,432 + -1.4 379,432 + -0.5 379,432 + +0.1 379,432 + -0.8 379,432 + -1.2 379,432 + -2.8 379,432 + +0.8 379,432 + +0.4 379,432 + -2.3 379,432 + +0.8 379,432 + +1.4 379,432 + -2.8 379,432 + -0.4 379,432 + -3.5 379,432 + -1.1 379,432 + -2.5 379,432 + -0.2 379,432 + -0.8 379,432 + +1.9 379,432 + -1.4 379,432 + -0.4 379,433 - +0.5 379,433 - -2.1 379,433 - -0.3 379,433 - -0.8 379,433 - -0.6 379,433 - +0.1 379,433 - +0.4 379,433 - +0.2 379,433 - -1.7 379,433 - -0.1 379,433 - -1.1 379,433 - -1.0 379,433 - -0.5 379,433 - -0.9 379,433 - -1.2 379,433 - -1.0 379,433 - -0.7 379,433 - +0.6 379,433 - -1.0 379,433 - +0.1 379,433 - -1.3 379,433 - -0.5 379,433 - -0.8 379,433 - +1.2 379,433 - -0.1 379,433 - -1.9 379,433 - -3.1 379,433 - -1.9 379,433 - -1.4 379,433 - +0.7 379,433 - +1.1 379,433 - -2.0 379,433 - +0.0 379,433 - +2.2 379,433 - +1.4 379,433 - +0.4 379,433 - -0.7 379,433 - -1.0 379,433 - -1.0 379,433 - -0.4 379,433 - -1.6 379,433 - +0.1 379,433 - +1.4 379,433 - +0.4 379,433 - +0.6 379,433 - -2.6 379,433 - +1.0 379,433 - +0.2 379,433 - -2.4 379,433 - -0.1 379,433 - +0.1 379,433 - -1.2 379,433 - +0.4 379,433 - +0.1 379,433 - +0.1 379,433 - -0.9 379,433 - -0.2 379,433 - +0.4 379,433 - +0.9 379,469 + -0.8 379,469 + -1.8 379,469 + -1.6 379,469 + -1.2 379,469 + +0.8 379,469 + +0.4 379,469 + -0.6 379,469 + -1.1 379,469 + -0.4 379,469 + +0.8 379,470 - +0.4 379,470 - -0.5 379,470 - -0.2 379,470 - +1.2 379,510 - -2.1 379,620 + +0.9 379,788 + LRK53_RS01600 0.27 +0.6 379,788 + LRK53_RS01600 0.27 +0.6 379,788 + LRK53_RS01600 0.27 +1.9 379,788 + LRK53_RS01600 0.27 -0.9 379,788 + LRK53_RS01600 0.27 -0.2 379,788 + LRK53_RS01600 0.27 +1.4 379,789 - LRK53_RS01600 0.27 -1.1 379,789 - LRK53_RS01600 0.27 -0.2 379,789 - LRK53_RS01600 0.27 -0.7 379,933 - LRK53_RS01600 0.42 -1.7 379,933 - LRK53_RS01600 0.42 -0.3 380,039 + LRK53_RS01600 0.54 -0.8 380,039 + LRK53_RS01600 0.54 -0.9 380,039 + LRK53_RS01600 0.54 +0.6 380,040 - LRK53_RS01600 0.54 -0.0 380,040 - LRK53_RS01600 0.54 +0.7 380,040 - LRK53_RS01600 0.54 +1.6 380,103 + LRK53_RS01600 0.61 +0.3 380,103 + LRK53_RS01600 0.61 -0.8 380,103 + LRK53_RS01600 0.61 -1.0 380,103 + LRK53_RS01600 0.61 -1.7 380,103 + LRK53_RS01600 0.61 -1.1 380,103 + LRK53_RS01600 0.61 -2.2 380,103 + LRK53_RS01600 0.61 +2.7 380,103 + LRK53_RS01600 0.61 -0.9 380,104 - LRK53_RS01600 0.61 -2.1 380,104 - LRK53_RS01600 0.61 -1.5 380,104 - LRK53_RS01600 0.61 -0.5 380,104 - LRK53_RS01600 0.61 +0.1 380,104 - LRK53_RS01600 0.61 +2.4 380,104 - LRK53_RS01600 0.61 +0.4 380,104 - LRK53_RS01600 0.61 -0.4 380,104 - LRK53_RS01600 0.61 -1.0 380,366 + LRK53_RS01600 0.90 +0.3
Or see this region's nucleotide sequence