Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01520 and LRK53_RS01525 are separated by 77 nucleotides LRK53_RS01525 and LRK53_RS01530 are separated by 59 nucleotides LRK53_RS01530 and LRK53_RS01535 are separated by 60 nucleotides
LRK53_RS01520: LRK53_RS01520 - rhodanese-like domain-containing protein, at 362,085 to 362,531
_RS01520
LRK53_RS01525: LRK53_RS01525 - hypothetical protein, at 362,609 to 363,022
_RS01525
LRK53_RS01530: LRK53_RS01530 - YiiD C-terminal domain-containing protein, at 363,082 to 363,555
_RS01530
LRK53_RS01535: LRK53_RS01535 - uroporphyrinogen-III synthase, at 363,616 to 364,395
_RS01535
Position (kb) 363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 362.082 kb on + strand at 362.082 kb on + strand at 362.082 kb on + strand at 362.082 kb on + strand at 362.082 kb on + strand at 362.086 kb on + strand at 362.086 kb on + strand at 362.086 kb on + strand at 362.086 kb on + strand at 362.152 kb on + strand, within LRK53_RS01520 at 362.152 kb on + strand, within LRK53_RS01520 at 362.152 kb on + strand, within LRK53_RS01520 at 362.152 kb on + strand, within LRK53_RS01520 at 362.153 kb on - strand, within LRK53_RS01520 at 362.153 kb on - strand, within LRK53_RS01520 at 362.153 kb on - strand, within LRK53_RS01520 at 362.153 kb on - strand, within LRK53_RS01520 at 362.426 kb on + strand, within LRK53_RS01520 at 362.427 kb on - strand, within LRK53_RS01520 at 362.427 kb on - strand, within LRK53_RS01520 at 362.427 kb on - strand, within LRK53_RS01520 at 362.427 kb on - strand, within LRK53_RS01520 at 362.427 kb on - strand, within LRK53_RS01520 at 362.427 kb on - strand, within LRK53_RS01520 at 362.570 kb on - strand at 362.581 kb on + strand at 362.581 kb on + strand at 362.581 kb on + strand at 362.581 kb on + strand at 362.581 kb on + strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.582 kb on - strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.584 kb on - strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.589 kb on + strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.590 kb on - strand at 362.670 kb on + strand, within LRK53_RS01525 at 362.670 kb on + strand, within LRK53_RS01525 at 362.670 kb on + strand, within LRK53_RS01525 at 362.671 kb on - strand, within LRK53_RS01525 at 362.794 kb on - strand, within LRK53_RS01525 at 362.919 kb on + strand, within LRK53_RS01525 at 362.920 kb on - strand, within LRK53_RS01525 at 362.920 kb on - strand, within LRK53_RS01525 at 363.120 kb on + strand at 363.120 kb on + strand at 363.273 kb on - strand, within LRK53_RS01530 at 363.592 kb on + strand at 363.593 kb on - strand at 363.593 kb on - strand at 363.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 362,082 + +2.5 362,082 + +0.0 362,082 + -1.0 362,082 + +1.2 362,082 + -2.3 362,086 + -0.4 362,086 + +0.4 362,086 + -1.5 362,086 + -0.4 362,152 + LRK53_RS01520 0.15 -0.1 362,152 + LRK53_RS01520 0.15 +1.3 362,152 + LRK53_RS01520 0.15 -0.2 362,152 + LRK53_RS01520 0.15 +0.2 362,153 - LRK53_RS01520 0.15 +0.9 362,153 - LRK53_RS01520 0.15 +0.1 362,153 - LRK53_RS01520 0.15 -0.3 362,153 - LRK53_RS01520 0.15 -2.9 362,426 + LRK53_RS01520 0.76 -0.2 362,427 - LRK53_RS01520 0.77 -0.7 362,427 - LRK53_RS01520 0.77 -0.5 362,427 - LRK53_RS01520 0.77 +1.2 362,427 - LRK53_RS01520 0.77 +1.7 362,427 - LRK53_RS01520 0.77 -1.0 362,427 - LRK53_RS01520 0.77 +0.6 362,570 - -0.6 362,581 + +2.9 362,581 + +0.5 362,581 + -1.0 362,581 + +0.9 362,581 + +0.4 362,582 - -1.8 362,582 - -0.7 362,582 - -0.8 362,582 - -0.0 362,582 - +0.4 362,582 - -2.2 362,582 - -2.9 362,582 - +1.1 362,582 - +1.4 362,582 - +0.3 362,583 + -2.4 362,583 + -1.4 362,583 + +1.5 362,583 + -1.5 362,583 + -0.9 362,583 + -0.0 362,583 + -1.0 362,583 + -1.1 362,583 + -2.8 362,583 + +2.2 362,583 + -0.9 362,584 - +0.0 362,584 - +0.5 362,584 - -2.3 362,584 - +0.4 362,584 - +2.1 362,584 - +2.5 362,584 - +1.1 362,584 - +0.1 362,584 - -1.1 362,584 - -1.7 362,584 - -1.1 362,589 + +0.1 362,589 + +0.5 362,589 + +1.2 362,589 + +1.5 362,589 + +0.5 362,589 + +0.1 362,589 + -0.6 362,589 + -0.9 362,589 + -0.1 362,589 + -1.0 362,589 + -1.0 362,589 + +0.4 362,589 + -2.5 362,589 + +0.9 362,590 - -1.1 362,590 - -0.6 362,590 - -0.7 362,590 - +0.2 362,590 - +0.6 362,590 - -0.6 362,590 - +0.2 362,590 - -1.2 362,590 - +0.1 362,590 - +2.4 362,590 - +0.4 362,670 + LRK53_RS01525 0.15 +0.5 362,670 + LRK53_RS01525 0.15 +0.5 362,670 + LRK53_RS01525 0.15 +1.9 362,671 - LRK53_RS01525 0.15 -2.2 362,794 - LRK53_RS01525 0.45 -0.1 362,919 + LRK53_RS01525 0.75 -2.5 362,920 - LRK53_RS01525 0.75 +0.1 362,920 - LRK53_RS01525 0.75 +0.2 363,120 + -0.1 363,120 + +0.0 363,273 - LRK53_RS01530 0.40 -2.0 363,592 + -1.4 363,593 - +1.1 363,593 - -0.9 363,604 + -0.4
Or see this region's nucleotide sequence