Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01135 and LRK53_RS01140 are separated by 16 nucleotides LRK53_RS01140 and LRK53_RS01145 are separated by 22 nucleotides
LRK53_RS01135: LRK53_RS01135 - tetratricopeptide repeat-containing sulfotransferase family protein, at 283,490 to 285,079
_RS01135
LRK53_RS01140: LRK53_RS01140 - complex I NDUFA9 subunit family protein, at 285,096 to 286,034
_RS01140
LRK53_RS01145: LRK53_RS01145 - transglycosylase SLT domain-containing protein, at 286,057 to 288,090
_RS01145
Position (kb) 285
286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 284.219 kb on + strand, within LRK53_RS01135 at 284.444 kb on + strand, within LRK53_RS01135 at 284.444 kb on + strand, within LRK53_RS01135 at 284.444 kb on + strand, within LRK53_RS01135 at 284.444 kb on + strand, within LRK53_RS01135 at 284.444 kb on + strand, within LRK53_RS01135 at 284.444 kb on + strand, within LRK53_RS01135 at 284.444 kb on + strand, within LRK53_RS01135 at 284.445 kb on - strand, within LRK53_RS01135 at 284.445 kb on - strand, within LRK53_RS01135 at 284.445 kb on - strand, within LRK53_RS01135 at 284.445 kb on - strand, within LRK53_RS01135 at 284.445 kb on - strand, within LRK53_RS01135 at 284.576 kb on + strand, within LRK53_RS01135 at 284.576 kb on + strand, within LRK53_RS01135 at 284.576 kb on + strand, within LRK53_RS01135 at 284.576 kb on + strand, within LRK53_RS01135 at 284.576 kb on + strand, within LRK53_RS01135 at 284.576 kb on + strand, within LRK53_RS01135 at 284.576 kb on + strand, within LRK53_RS01135 at 284.577 kb on - strand, within LRK53_RS01135 at 284.577 kb on - strand, within LRK53_RS01135 at 284.577 kb on - strand, within LRK53_RS01135 at 284.577 kb on - strand, within LRK53_RS01135 at 284.577 kb on - strand, within LRK53_RS01135 at 284.577 kb on - strand, within LRK53_RS01135 at 284.577 kb on - strand, within LRK53_RS01135 at 284.768 kb on + strand, within LRK53_RS01135 at 284.768 kb on + strand, within LRK53_RS01135 at 284.768 kb on + strand, within LRK53_RS01135 at 284.768 kb on + strand, within LRK53_RS01135 at 284.768 kb on + strand, within LRK53_RS01135 at 284.769 kb on - strand, within LRK53_RS01135 at 284.769 kb on - strand, within LRK53_RS01135 at 284.769 kb on - strand, within LRK53_RS01135 at 284.769 kb on - strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.792 kb on + strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.793 kb on - strand, within LRK53_RS01135 at 284.930 kb on + strand at 284.930 kb on + strand at 284.931 kb on - strand at 284.971 kb on + strand at 285.067 kb on - strand at 285.206 kb on - strand, within LRK53_RS01140 at 285.255 kb on + strand, within LRK53_RS01140 at 285.280 kb on - strand, within LRK53_RS01140 at 285.403 kb on + strand, within LRK53_RS01140 at 285.403 kb on + strand, within LRK53_RS01140 at 285.403 kb on + strand, within LRK53_RS01140 at 285.404 kb on - strand, within LRK53_RS01140 at 285.404 kb on - strand, within LRK53_RS01140 at 285.423 kb on + strand, within LRK53_RS01140 at 285.424 kb on - strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.598 kb on + strand, within LRK53_RS01140 at 285.599 kb on - strand, within LRK53_RS01140 at 285.599 kb on - strand, within LRK53_RS01140 at 285.599 kb on - strand, within LRK53_RS01140 at 285.661 kb on + strand, within LRK53_RS01140 at 285.661 kb on + strand, within LRK53_RS01140 at 285.661 kb on + strand, within LRK53_RS01140 at 285.661 kb on + strand, within LRK53_RS01140 at 285.661 kb on + strand, within LRK53_RS01140 at 285.661 kb on + strand, within LRK53_RS01140 at 285.662 kb on - strand, within LRK53_RS01140 at 285.662 kb on - strand, within LRK53_RS01140 at 285.662 kb on - strand, within LRK53_RS01140 at 285.662 kb on - strand, within LRK53_RS01140 at 285.662 kb on - strand, within LRK53_RS01140 at 286.220 kb on + strand at 286.220 kb on + strand at 286.220 kb on + strand at 286.220 kb on + strand at 286.220 kb on + strand at 286.220 kb on + strand at 286.220 kb on + strand at 286.220 kb on + strand at 286.220 kb on + strand at 286.221 kb on - strand at 286.221 kb on - strand at 286.221 kb on - strand at 286.221 kb on - strand at 286.221 kb on - strand at 286.221 kb on - strand at 286.221 kb on - strand at 286.253 kb on + strand at 286.253 kb on + strand at 286.253 kb on + strand at 286.254 kb on - strand at 286.254 kb on - strand at 286.254 kb on - strand at 286.271 kb on + strand, within LRK53_RS01145 at 286.271 kb on + strand, within LRK53_RS01145 at 286.272 kb on - strand, within LRK53_RS01145 at 286.272 kb on - strand, within LRK53_RS01145 at 286.355 kb on + strand, within LRK53_RS01145 at 286.355 kb on + strand, within LRK53_RS01145 at 286.355 kb on + strand, within LRK53_RS01145 at 286.355 kb on + strand, within LRK53_RS01145 at 286.356 kb on - strand, within LRK53_RS01145 at 286.356 kb on - strand, within LRK53_RS01145 at 286.448 kb on + strand, within LRK53_RS01145 at 286.448 kb on + strand, within LRK53_RS01145 at 286.449 kb on - strand, within LRK53_RS01145 at 286.449 kb on - strand, within LRK53_RS01145 at 286.449 kb on - strand, within LRK53_RS01145 at 286.592 kb on + strand, within LRK53_RS01145 at 286.673 kb on + strand, within LRK53_RS01145 at 286.673 kb on + strand, within LRK53_RS01145 at 286.673 kb on + strand, within LRK53_RS01145 at 286.673 kb on + strand, within LRK53_RS01145 at 286.673 kb on + strand, within LRK53_RS01145 at 286.674 kb on - strand, within LRK53_RS01145 at 286.674 kb on - strand, within LRK53_RS01145 at 286.704 kb on + strand, within LRK53_RS01145 at 286.704 kb on + strand, within LRK53_RS01145 at 286.705 kb on - strand, within LRK53_RS01145 at 286.705 kb on - strand, within LRK53_RS01145
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 284,219 + LRK53_RS01135 0.46 +0.1 284,444 + LRK53_RS01135 0.60 -0.3 284,444 + LRK53_RS01135 0.60 +0.1 284,444 + LRK53_RS01135 0.60 +0.2 284,444 + LRK53_RS01135 0.60 +1.3 284,444 + LRK53_RS01135 0.60 -0.3 284,444 + LRK53_RS01135 0.60 +0.1 284,444 + LRK53_RS01135 0.60 -1.7 284,445 - LRK53_RS01135 0.60 -0.8 284,445 - LRK53_RS01135 0.60 -1.0 284,445 - LRK53_RS01135 0.60 -2.0 284,445 - LRK53_RS01135 0.60 -0.1 284,445 - LRK53_RS01135 0.60 +1.8 284,576 + LRK53_RS01135 0.68 -0.8 284,576 + LRK53_RS01135 0.68 -0.5 284,576 + LRK53_RS01135 0.68 -1.9 284,576 + LRK53_RS01135 0.68 -0.3 284,576 + LRK53_RS01135 0.68 +1.0 284,576 + LRK53_RS01135 0.68 +0.7 284,576 + LRK53_RS01135 0.68 -1.2 284,577 - LRK53_RS01135 0.68 +0.5 284,577 - LRK53_RS01135 0.68 +1.0 284,577 - LRK53_RS01135 0.68 +0.0 284,577 - LRK53_RS01135 0.68 -1.6 284,577 - LRK53_RS01135 0.68 -0.2 284,577 - LRK53_RS01135 0.68 -3.3 284,577 - LRK53_RS01135 0.68 +1.5 284,768 + LRK53_RS01135 0.80 -1.3 284,768 + LRK53_RS01135 0.80 -0.0 284,768 + LRK53_RS01135 0.80 +0.9 284,768 + LRK53_RS01135 0.80 -0.8 284,768 + LRK53_RS01135 0.80 -0.4 284,769 - LRK53_RS01135 0.80 -0.9 284,769 - LRK53_RS01135 0.80 +1.2 284,769 - LRK53_RS01135 0.80 -1.7 284,769 - LRK53_RS01135 0.80 +0.7 284,792 + LRK53_RS01135 0.82 -1.1 284,792 + LRK53_RS01135 0.82 -1.7 284,792 + LRK53_RS01135 0.82 -1.5 284,792 + LRK53_RS01135 0.82 -1.7 284,792 + LRK53_RS01135 0.82 -0.6 284,792 + LRK53_RS01135 0.82 -1.3 284,792 + LRK53_RS01135 0.82 -0.9 284,792 + LRK53_RS01135 0.82 -1.7 284,792 + LRK53_RS01135 0.82 -0.1 284,793 - LRK53_RS01135 0.82 -0.2 284,793 - LRK53_RS01135 0.82 -2.3 284,793 - LRK53_RS01135 0.82 +0.9 284,793 - LRK53_RS01135 0.82 -1.2 284,793 - LRK53_RS01135 0.82 -0.1 284,793 - LRK53_RS01135 0.82 -0.9 284,793 - LRK53_RS01135 0.82 +0.2 284,793 - LRK53_RS01135 0.82 -0.7 284,793 - LRK53_RS01135 0.82 -1.5 284,793 - LRK53_RS01135 0.82 -0.8 284,793 - LRK53_RS01135 0.82 -0.2 284,793 - LRK53_RS01135 0.82 -2.3 284,793 - LRK53_RS01135 0.82 +0.8 284,793 - LRK53_RS01135 0.82 -1.9 284,793 - LRK53_RS01135 0.82 -1.6 284,930 + -1.0 284,930 + +0.1 284,931 - +1.4 284,971 + +0.2 285,067 - -1.0 285,206 - LRK53_RS01140 0.12 -1.0 285,255 + LRK53_RS01140 0.17 -0.7 285,280 - LRK53_RS01140 0.20 +0.2 285,403 + LRK53_RS01140 0.33 +1.0 285,403 + LRK53_RS01140 0.33 +0.0 285,403 + LRK53_RS01140 0.33 +0.7 285,404 - LRK53_RS01140 0.33 -1.2 285,404 - LRK53_RS01140 0.33 -1.9 285,423 + LRK53_RS01140 0.35 +0.8 285,424 - LRK53_RS01140 0.35 +0.3 285,598 + LRK53_RS01140 0.53 +1.3 285,598 + LRK53_RS01140 0.53 -0.8 285,598 + LRK53_RS01140 0.53 -1.2 285,598 + LRK53_RS01140 0.53 -1.8 285,598 + LRK53_RS01140 0.53 -0.6 285,598 + LRK53_RS01140 0.53 -1.1 285,598 + LRK53_RS01140 0.53 -0.8 285,598 + LRK53_RS01140 0.53 -0.7 285,598 + LRK53_RS01140 0.53 -0.5 285,598 + LRK53_RS01140 0.53 -1.2 285,598 + LRK53_RS01140 0.53 +2.0 285,599 - LRK53_RS01140 0.54 +0.0 285,599 - LRK53_RS01140 0.54 -0.2 285,599 - LRK53_RS01140 0.54 -2.2 285,661 + LRK53_RS01140 0.60 -0.2 285,661 + LRK53_RS01140 0.60 -1.1 285,661 + LRK53_RS01140 0.60 +0.4 285,661 + LRK53_RS01140 0.60 +0.0 285,661 + LRK53_RS01140 0.60 -0.7 285,661 + LRK53_RS01140 0.60 +3.0 285,662 - LRK53_RS01140 0.60 -2.0 285,662 - LRK53_RS01140 0.60 -2.3 285,662 - LRK53_RS01140 0.60 -0.9 285,662 - LRK53_RS01140 0.60 -0.2 285,662 - LRK53_RS01140 0.60 -2.3 286,220 + -0.4 286,220 + -1.5 286,220 + +0.5 286,220 + +0.1 286,220 + -0.2 286,220 + -0.5 286,220 + +1.1 286,220 + -0.1 286,220 + +1.0 286,221 - -1.5 286,221 - +0.4 286,221 - +1.4 286,221 - -0.9 286,221 - -0.6 286,221 - -0.8 286,221 - +2.0 286,253 + -0.1 286,253 + -1.2 286,253 + +0.3 286,254 - -0.6 286,254 - +2.2 286,254 - -0.6 286,271 + LRK53_RS01145 0.11 +1.7 286,271 + LRK53_RS01145 0.11 -0.2 286,272 - LRK53_RS01145 0.11 +1.2 286,272 - LRK53_RS01145 0.11 +0.7 286,355 + LRK53_RS01145 0.15 +1.2 286,355 + LRK53_RS01145 0.15 -1.1 286,355 + LRK53_RS01145 0.15 -0.7 286,355 + LRK53_RS01145 0.15 +3.0 286,356 - LRK53_RS01145 0.15 -0.2 286,356 - LRK53_RS01145 0.15 +1.3 286,448 + LRK53_RS01145 0.19 +0.0 286,448 + LRK53_RS01145 0.19 +1.4 286,449 - LRK53_RS01145 0.19 -1.9 286,449 - LRK53_RS01145 0.19 +0.4 286,449 - LRK53_RS01145 0.19 -1.2 286,592 + LRK53_RS01145 0.26 +0.5 286,673 + LRK53_RS01145 0.30 +0.0 286,673 + LRK53_RS01145 0.30 +0.5 286,673 + LRK53_RS01145 0.30 -0.7 286,673 + LRK53_RS01145 0.30 +0.3 286,673 + LRK53_RS01145 0.30 +0.5 286,674 - LRK53_RS01145 0.30 -0.5 286,674 - LRK53_RS01145 0.30 +0.4 286,704 + LRK53_RS01145 0.32 +1.8 286,704 + LRK53_RS01145 0.32 -1.3 286,705 - LRK53_RS01145 0.32 +1.5 286,705 - LRK53_RS01145 0.32 -0.9
Or see this region's nucleotide sequence