Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00830

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00825 and LRK53_RS00830 are separated by 229 nucleotidesLRK53_RS00830 and LRK53_RS00835 are separated by 156 nucleotides LRK53_RS00825: LRK53_RS00825 - family 20 glycosylhydrolase, at 195,653 to 197,956 _RS00825 LRK53_RS00830: LRK53_RS00830 - heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein, at 198,186 to 199,247 _RS00830 LRK53_RS00835: LRK53_RS00835 - ATP-dependent DNA helicase, at 199,404 to 200,900 _RS00835 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 197.227 kb on + strand, within LRK53_RS00825at 197.227 kb on + strand, within LRK53_RS00825at 197.228 kb on - strand, within LRK53_RS00825at 197.387 kb on + strand, within LRK53_RS00825at 197.542 kb on + strand, within LRK53_RS00825at 197.597 kb on + strand, within LRK53_RS00825at 197.597 kb on + strand, within LRK53_RS00825at 197.597 kb on + strand, within LRK53_RS00825at 197.764 kb on - strandat 197.844 kb on + strandat 197.844 kb on + strandat 197.844 kb on + strandat 197.844 kb on + strandat 197.844 kb on + strandat 197.844 kb on + strandat 197.845 kb on - strandat 197.845 kb on - strandat 197.845 kb on - strandat 197.845 kb on - strandat 197.845 kb on - strandat 197.845 kb on - strandat 197.845 kb on - strandat 197.865 kb on + strandat 197.897 kb on + strandat 197.898 kb on - strandat 197.898 kb on - strandat 197.924 kb on + strandat 197.925 kb on - strandat 197.925 kb on - strandat 198.156 kb on + strandat 198.156 kb on + strandat 198.156 kb on + strandat 198.156 kb on + strandat 198.156 kb on + strandat 198.156 kb on + strandat 198.156 kb on + strandat 198.156 kb on + strandat 198.156 kb on + strandat 198.157 kb on - strandat 198.157 kb on - strandat 198.276 kb on + strandat 198.277 kb on - strandat 198.277 kb on - strandat 198.573 kb on + strand, within LRK53_RS00830at 198.573 kb on + strand, within LRK53_RS00830at 198.573 kb on + strand, within LRK53_RS00830at 198.573 kb on + strand, within LRK53_RS00830at 198.574 kb on - strand, within LRK53_RS00830at 198.574 kb on - strand, within LRK53_RS00830at 198.574 kb on - strand, within LRK53_RS00830at 198.574 kb on - strand, within LRK53_RS00830at 198.574 kb on - strand, within LRK53_RS00830at 198.574 kb on - strand, within LRK53_RS00830at 198.575 kb on + strand, within LRK53_RS00830at 198.575 kb on + strand, within LRK53_RS00830at 198.575 kb on + strand, within LRK53_RS00830at 198.575 kb on + strand, within LRK53_RS00830at 198.576 kb on - strand, within LRK53_RS00830at 198.576 kb on - strand, within LRK53_RS00830at 198.576 kb on - strand, within LRK53_RS00830at 198.714 kb on + strand, within LRK53_RS00830at 199.047 kb on + strand, within LRK53_RS00830at 199.047 kb on + strand, within LRK53_RS00830at 199.048 kb on - strand, within LRK53_RS00830at 199.108 kb on - strand, within LRK53_RS00830at 199.152 kb on + strandat 199.153 kb on - strandat 199.153 kb on - strandat 199.153 kb on - strandat 199.153 kb on - strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.229 kb on + strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.230 kb on - strandat 199.551 kb on + strandat 199.551 kb on + strandat 199.552 kb on - strandat 199.552 kb on - strandat 199.552 kb on - strandat 199.552 kb on - strandat 199.552 kb on - strandat 199.843 kb on - strand, within LRK53_RS00835at 199.843 kb on - strand, within LRK53_RS00835at 199.843 kb on - strand, within LRK53_RS00835

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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197,227 + LRK53_RS00825 0.68 +1.3
197,227 + LRK53_RS00825 0.68 -1.1
197,228 - LRK53_RS00825 0.68 -0.8
197,387 + LRK53_RS00825 0.75 -1.5
197,542 + LRK53_RS00825 0.82 +2.1
197,597 + LRK53_RS00825 0.84 -0.3
197,597 + LRK53_RS00825 0.84 -2.3
197,597 + LRK53_RS00825 0.84 -1.6
197,764 - +0.5
197,844 + -0.5
197,844 + -0.5
197,844 + -0.4
197,844 + -0.4
197,844 + -1.2
197,844 + +0.3
197,845 - -0.6
197,845 - -0.8
197,845 - -0.3
197,845 - +1.2
197,845 - -1.1
197,845 - -0.1
197,845 - -0.1
197,865 + -0.6
197,897 + +0.5
197,898 - -0.0
197,898 - +1.1
197,924 + -0.0
197,925 - -0.5
197,925 - -2.8
198,156 + +1.2
198,156 + -0.7
198,156 + -2.1
198,156 + +0.5
198,156 + +0.4
198,156 + -0.3
198,156 + -2.7
198,156 + -1.4
198,156 + +0.1
198,157 - +0.4
198,157 - +0.2
198,276 + +0.3
198,277 - -0.1
198,277 - +0.3
198,573 + LRK53_RS00830 0.36 -1.2
198,573 + LRK53_RS00830 0.36 -1.5
198,573 + LRK53_RS00830 0.36 -2.5
198,573 + LRK53_RS00830 0.36 -0.3
198,574 - LRK53_RS00830 0.37 +0.3
198,574 - LRK53_RS00830 0.37 -0.3
198,574 - LRK53_RS00830 0.37 -0.6
198,574 - LRK53_RS00830 0.37 +0.4
198,574 - LRK53_RS00830 0.37 -0.3
198,574 - LRK53_RS00830 0.37 +0.5
198,575 + LRK53_RS00830 0.37 -1.2
198,575 + LRK53_RS00830 0.37 -1.6
198,575 + LRK53_RS00830 0.37 +1.5
198,575 + LRK53_RS00830 0.37 +0.8
198,576 - LRK53_RS00830 0.37 -0.9
198,576 - LRK53_RS00830 0.37 +0.6
198,576 - LRK53_RS00830 0.37 -0.7
198,714 + LRK53_RS00830 0.50 +0.1
199,047 + LRK53_RS00830 0.81 -1.6
199,047 + LRK53_RS00830 0.81 -0.9
199,048 - LRK53_RS00830 0.81 -1.0
199,108 - LRK53_RS00830 0.87 -0.1
199,152 + -1.7
199,153 - +1.3
199,153 - +0.1
199,153 - -1.0
199,153 - -0.3
199,229 + +1.1
199,229 + -0.7
199,229 + +0.2
199,229 + -0.4
199,229 + -1.9
199,229 + -0.8
199,229 + +0.2
199,229 + -1.9
199,229 + +1.5
199,229 + -1.4
199,229 + -1.1
199,230 - -0.5
199,230 - -0.1
199,230 - +0.2
199,230 - -0.4
199,230 - +0.4
199,230 - -0.4
199,230 - -1.3
199,230 - -1.0
199,551 + -1.7
199,551 + -0.2
199,552 - -0.3
199,552 - +2.8
199,552 - +0.3
199,552 - -0.2
199,552 - +0.1
199,843 - LRK53_RS00835 0.29 -0.3
199,843 - LRK53_RS00835 0.29 -0.9
199,843 - LRK53_RS00835 0.29 -1.0

Or see this region's nucleotide sequence