Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00780

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00770 and LRK53_RS00775 are separated by 207 nucleotidesLRK53_RS00775 and LRK53_RS00780 are separated by 43 nucleotidesLRK53_RS00780 and LRK53_RS00785 are separated by 51 nucleotides LRK53_RS00770: LRK53_RS00770 - NAD(P)/FAD-dependent oxidoreductase, at 180,506 to 181,807 _RS00770 LRK53_RS00775: LRK53_RS00775 - metalloregulator ArsR/SmtB family transcription factor, at 182,015 to 182,365 _RS00775 LRK53_RS00780: LRK53_RS00780 - MBL fold metallo-hydrolase, at 182,409 to 183,275 _RS00780 LRK53_RS00785: LRK53_RS00785 - membrane protein, at 183,327 to 184,184 _RS00785 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 181.443 kb on + strand, within LRK53_RS00770at 181.444 kb on - strand, within LRK53_RS00770at 181.509 kb on + strand, within LRK53_RS00770at 181.509 kb on + strand, within LRK53_RS00770at 181.509 kb on + strand, within LRK53_RS00770at 181.509 kb on + strand, within LRK53_RS00770at 181.510 kb on - strand, within LRK53_RS00770at 181.516 kb on - strand, within LRK53_RS00770at 181.756 kb on - strandat 181.756 kb on - strandat 181.884 kb on - strandat 181.913 kb on + strandat 181.913 kb on + strandat 181.913 kb on + strandat 181.978 kb on + strandat 181.978 kb on + strandat 181.979 kb on - strandat 182.232 kb on + strand, within LRK53_RS00775at 182.265 kb on - strand, within LRK53_RS00775at 182.265 kb on - strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.463 kb on + strandat 182.463 kb on + strandat 182.463 kb on + strandat 182.464 kb on - strandat 182.464 kb on - strandat 182.521 kb on - strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.653 kb on - strand, within LRK53_RS00780at 182.653 kb on - strand, within LRK53_RS00780at 182.653 kb on - strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.847 kb on - strand, within LRK53_RS00780at 182.847 kb on - strand, within LRK53_RS00780at 182.847 kb on - strand, within LRK53_RS00780at 182.964 kb on + strand, within LRK53_RS00780at 182.965 kb on - strand, within LRK53_RS00780at 182.965 kb on - strand, within LRK53_RS00780at 183.027 kb on + strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.246 kb on + strandat 183.246 kb on + strandat 183.247 kb on - strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.338 kb on - strandat 183.338 kb on - strandat 183.338 kb on - strandat 183.338 kb on - strandat 183.338 kb on - strandat 183.338 kb on - strandat 183.432 kb on + strand, within LRK53_RS00785at 183.432 kb on + strand, within LRK53_RS00785at 183.432 kb on + strand, within LRK53_RS00785at 183.432 kb on + strand, within LRK53_RS00785at 183.432 kb on + strand, within LRK53_RS00785at 183.432 kb on + strand, within LRK53_RS00785at 183.432 kb on + strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.433 kb on - strand, within LRK53_RS00785at 183.772 kb on - strand, within LRK53_RS00785at 183.772 kb on - strand, within LRK53_RS00785at 183.841 kb on + strand, within LRK53_RS00785at 184.002 kb on + strand, within LRK53_RS00785at 184.002 kb on + strand, within LRK53_RS00785at 184.176 kb on + strandat 184.226 kb on + strandat 184.226 kb on + strandat 184.226 kb on + strandat 184.226 kb on + strandat 184.226 kb on + strandat 184.226 kb on + strandat 184.226 kb on + strandat 184.226 kb on + strandat 184.226 kb on + strandat 184.227 kb on - strandat 184.227 kb on - strandat 184.227 kb on - strandat 184.227 kb on - strandat 184.227 kb on - strandat 184.227 kb on - strandat 184.227 kb on - strandat 184.227 kb on - strandat 184.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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181,443 + LRK53_RS00770 0.72 +0.5
181,444 - LRK53_RS00770 0.72 -0.1
181,509 + LRK53_RS00770 0.77 -1.5
181,509 + LRK53_RS00770 0.77 +1.2
181,509 + LRK53_RS00770 0.77 -1.8
181,509 + LRK53_RS00770 0.77 -0.3
181,510 - LRK53_RS00770 0.77 +0.9
181,516 - LRK53_RS00770 0.78 -0.5
181,756 - -0.3
181,756 - +0.1
181,884 - -1.3
181,913 + -0.4
181,913 + +1.5
181,913 + +1.5
181,978 + -1.3
181,978 + +0.8
181,979 - -0.4
182,232 + LRK53_RS00775 0.62 +0.3
182,265 - LRK53_RS00775 0.71 -0.5
182,265 - LRK53_RS00775 0.71 -0.5
182,309 + LRK53_RS00775 0.84 -2.5
182,309 + LRK53_RS00775 0.84 -0.9
182,309 + LRK53_RS00775 0.84 +0.6
182,309 + LRK53_RS00775 0.84 +0.3
182,309 + LRK53_RS00775 0.84 -0.1
182,309 + LRK53_RS00775 0.84 -0.9
182,309 + LRK53_RS00775 0.84 -1.3
182,309 + LRK53_RS00775 0.84 -0.1
182,310 - LRK53_RS00775 0.84 -0.0
182,310 - LRK53_RS00775 0.84 -0.9
182,310 - LRK53_RS00775 0.84 -0.0
182,310 - LRK53_RS00775 0.84 +0.8
182,310 - LRK53_RS00775 0.84 -0.9
182,310 - LRK53_RS00775 0.84 -1.4
182,310 - LRK53_RS00775 0.84 +1.6
182,310 - LRK53_RS00775 0.84 -0.2
182,310 - LRK53_RS00775 0.84 +2.2
182,310 - LRK53_RS00775 0.84 +1.2
182,318 + LRK53_RS00775 0.86 -1.4
182,318 + LRK53_RS00775 0.86 -1.1
182,318 + LRK53_RS00775 0.86 +0.2
182,318 + LRK53_RS00775 0.86 -0.9
182,318 + LRK53_RS00775 0.86 -1.2
182,318 + LRK53_RS00775 0.86 -1.1
182,318 + LRK53_RS00775 0.86 +0.2
182,318 + LRK53_RS00775 0.86 +0.6
182,318 + LRK53_RS00775 0.86 -0.7
182,318 + LRK53_RS00775 0.86 +0.6
182,318 + LRK53_RS00775 0.86 -0.4
182,318 + LRK53_RS00775 0.86 -1.8
182,318 + LRK53_RS00775 0.86 +0.6
182,318 + LRK53_RS00775 0.86 -0.1
182,319 - LRK53_RS00775 0.87 -3.3
182,319 - LRK53_RS00775 0.87 -1.2
182,319 - LRK53_RS00775 0.87 -1.2
182,319 - LRK53_RS00775 0.87 +1.2
182,319 - LRK53_RS00775 0.87 +0.4
182,319 - LRK53_RS00775 0.87 +0.0
182,319 - LRK53_RS00775 0.87 -1.1
182,319 - LRK53_RS00775 0.87 -0.5
182,319 - LRK53_RS00775 0.87 -0.2
182,319 - LRK53_RS00775 0.87 -0.5
182,319 - LRK53_RS00775 0.87 -0.9
182,463 + +0.5
182,463 + -1.3
182,463 + -1.5
182,464 - +1.8
182,464 - +1.1
182,521 - LRK53_RS00780 0.13 -0.8
182,652 + LRK53_RS00780 0.28 -1.3
182,652 + LRK53_RS00780 0.28 +0.1
182,652 + LRK53_RS00780 0.28 +0.5
182,652 + LRK53_RS00780 0.28 -2.8
182,652 + LRK53_RS00780 0.28 -0.4
182,652 + LRK53_RS00780 0.28 -1.8
182,652 + LRK53_RS00780 0.28 -2.1
182,652 + LRK53_RS00780 0.28 -0.1
182,652 + LRK53_RS00780 0.28 -1.2
182,653 - LRK53_RS00780 0.28 +0.1
182,653 - LRK53_RS00780 0.28 -1.4
182,653 - LRK53_RS00780 0.28 -0.7
182,846 + LRK53_RS00780 0.50 +0.0
182,846 + LRK53_RS00780 0.50 -1.0
182,846 + LRK53_RS00780 0.50 -2.7
182,846 + LRK53_RS00780 0.50 +1.5
182,846 + LRK53_RS00780 0.50 +0.1
182,846 + LRK53_RS00780 0.50 -0.8
182,846 + LRK53_RS00780 0.50 +0.1
182,847 - LRK53_RS00780 0.51 -0.4
182,847 - LRK53_RS00780 0.51 -0.9
182,847 - LRK53_RS00780 0.51 -1.3
182,964 + LRK53_RS00780 0.64 -0.3
182,965 - LRK53_RS00780 0.64 +0.1
182,965 - LRK53_RS00780 0.64 -0.1
183,027 + LRK53_RS00780 0.71 -0.9
183,028 - LRK53_RS00780 0.71 +0.1
183,028 - LRK53_RS00780 0.71 -0.5
183,028 - LRK53_RS00780 0.71 -1.6
183,028 - LRK53_RS00780 0.71 -0.5
183,246 + -0.5
183,246 + -0.6
183,247 - -0.4
183,333 + -0.5
183,333 + +0.5
183,333 + -0.8
183,333 + -0.9
183,333 + -0.0
183,333 + -0.1
183,333 + +1.7
183,333 + -1.6
183,333 + -1.0
183,333 + +0.2
183,333 + +0.1
183,333 + -0.3
183,333 + -2.0
183,333 + -1.0
183,333 + -0.9
183,334 - +0.3
183,334 - -0.4
183,334 - +0.2
183,334 - +1.9
183,334 - +0.6
183,334 - -1.0
183,334 - +0.7
183,334 - -0.3
183,334 - +0.2
183,334 - +0.8
183,337 + +0.7
183,337 + +0.1
183,337 + -1.5
183,337 + -2.1
183,337 + -2.1
183,338 - -2.1
183,338 - +1.1
183,338 - -1.0
183,338 - -0.1
183,338 - +0.6
183,338 - +0.2
183,432 + LRK53_RS00785 0.12 -0.1
183,432 + LRK53_RS00785 0.12 +2.1
183,432 + LRK53_RS00785 0.12 -1.9
183,432 + LRK53_RS00785 0.12 +0.7
183,432 + LRK53_RS00785 0.12 +0.1
183,432 + LRK53_RS00785 0.12 -1.0
183,432 + LRK53_RS00785 0.12 +0.9
183,433 - LRK53_RS00785 0.12 -2.1
183,433 - LRK53_RS00785 0.12 +1.1
183,433 - LRK53_RS00785 0.12 -1.2
183,433 - LRK53_RS00785 0.12 -1.9
183,433 - LRK53_RS00785 0.12 +0.8
183,433 - LRK53_RS00785 0.12 +2.6
183,433 - LRK53_RS00785 0.12 -0.9
183,433 - LRK53_RS00785 0.12 +0.2
183,433 - LRK53_RS00785 0.12 -0.6
183,433 - LRK53_RS00785 0.12 +0.7
183,433 - LRK53_RS00785 0.12 +0.1
183,433 - LRK53_RS00785 0.12 +0.7
183,433 - LRK53_RS00785 0.12 -0.5
183,433 - LRK53_RS00785 0.12 -2.0
183,433 - LRK53_RS00785 0.12 -1.0
183,772 - LRK53_RS00785 0.52 +1.5
183,772 - LRK53_RS00785 0.52 -1.5
183,841 + LRK53_RS00785 0.60 +0.9
184,002 + LRK53_RS00785 0.79 -2.7
184,002 + LRK53_RS00785 0.79 +0.8
184,176 + -0.3
184,226 + -0.9
184,226 + -0.5
184,226 + -1.2
184,226 + -1.0
184,226 + -0.9
184,226 + +2.1
184,226 + +0.6
184,226 + -1.0
184,226 + +0.5
184,227 - -1.2
184,227 - -1.2
184,227 - -2.1
184,227 - -2.1
184,227 - -1.3
184,227 - -0.7
184,227 - -1.5
184,227 - +2.6
184,227 - -0.3

Or see this region's nucleotide sequence