Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00635 and LRK53_RS00640 are separated by 66 nucleotides LRK53_RS00640 and LRK53_RS00645 are separated by 176 nucleotides LRK53_RS00645 and LRK53_RS00650 are separated by 206 nucleotides LRK53_RS00650 and LRK53_RS00655 are separated by 84 nucleotides
LRK53_RS00635: LRK53_RS00635 - HAD-IB family hydrolase, at 145,148 to 145,741
_RS00635
LRK53_RS00640: LRK53_RS00640 - hypothetical protein, at 145,808 to 146,443
_RS00640
LRK53_RS00645: LRK53_RS00645 - GTP cyclohydrolase I FolE, at 146,620 to 147,243
_RS00645
LRK53_RS00650: LRK53_RS00650 - RNA polymerase sigma factor, at 147,450 to 148,154
_RS00650
LRK53_RS00655: LRK53_RS00655 - TlpA family protein disulfide reductase, at 148,239 to 149,051
_RS00655
Position (kb) 146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 145.631 kb on + strand, within LRK53_RS00635 at 145.631 kb on + strand, within LRK53_RS00635 at 145.631 kb on + strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.632 kb on - strand, within LRK53_RS00635 at 145.659 kb on - strand, within LRK53_RS00635 at 145.716 kb on - strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.716 kb on - strand at 145.856 kb on + strand at 145.857 kb on - strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.863 kb on + strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.864 kb on - strand at 145.980 kb on + strand, within LRK53_RS00640 at 145.980 kb on + strand, within LRK53_RS00640 at 145.980 kb on + strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 145.981 kb on - strand, within LRK53_RS00640 at 146.163 kb on + strand, within LRK53_RS00640 at 146.164 kb on - strand, within LRK53_RS00640 at 146.307 kb on + strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.308 kb on - strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.343 kb on + strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.344 kb on - strand, within LRK53_RS00640 at 146.490 kb on + strand at 146.491 kb on - strand at 146.491 kb on - strand at 146.491 kb on - strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.492 kb on + strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.493 kb on - strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.498 kb on + strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.499 kb on - strand at 146.601 kb on + strand at 146.794 kb on + strand, within LRK53_RS00645 at 146.794 kb on + strand, within LRK53_RS00645 at 146.795 kb on - strand, within LRK53_RS00645 at 146.870 kb on - strand, within LRK53_RS00645 at 146.959 kb on + strand, within LRK53_RS00645 at 146.959 kb on + strand, within LRK53_RS00645 at 146.960 kb on - strand, within LRK53_RS00645 at 147.256 kb on - strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.436 kb on - strand at 147.436 kb on - strand at 147.436 kb on - strand at 147.436 kb on - strand at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.654 kb on + strand, within LRK53_RS00650 at 147.655 kb on - strand, within LRK53_RS00650 at 147.655 kb on - strand, within LRK53_RS00650 at 147.655 kb on - strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 148.011 kb on + strand, within LRK53_RS00650 at 148.011 kb on + strand, within LRK53_RS00650 at 148.163 kb on - strand at 148.163 kb on - strand at 148.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 145,631 + LRK53_RS00635 0.81 +1.9 145,631 + LRK53_RS00635 0.81 +0.9 145,631 + LRK53_RS00635 0.81 +0.7 145,632 - LRK53_RS00635 0.81 +0.7 145,632 - LRK53_RS00635 0.81 +0.2 145,632 - LRK53_RS00635 0.81 -0.3 145,632 - LRK53_RS00635 0.81 +0.2 145,632 - LRK53_RS00635 0.81 +0.7 145,632 - LRK53_RS00635 0.81 -1.1 145,659 - LRK53_RS00635 0.86 +0.1 145,716 - -0.4 145,716 - -0.6 145,716 - +0.5 145,716 - +0.7 145,716 - -0.3 145,716 - -0.3 145,856 + -0.3 145,857 - +0.1 145,863 + -2.2 145,863 + +0.2 145,863 + -2.4 145,863 + -0.1 145,863 + +0.3 145,863 + +0.2 145,863 + -1.9 145,863 + -1.6 145,863 + +0.7 145,863 + -1.7 145,863 + -1.0 145,863 + -1.1 145,863 + -0.4 145,863 + -1.9 145,863 + -1.0 145,864 - +0.6 145,864 - -2.0 145,864 - -0.4 145,864 - -1.0 145,864 - +0.4 145,864 - +0.4 145,864 - -0.5 145,864 - -1.9 145,864 - +0.3 145,864 - -1.1 145,864 - -1.6 145,864 - +0.3 145,864 - -2.4 145,864 - +0.9 145,864 - -1.0 145,864 - -0.7 145,864 - -0.5 145,864 - +0.2 145,864 - +0.1 145,864 - -0.1 145,864 - -0.5 145,980 + LRK53_RS00640 0.27 -1.3 145,980 + LRK53_RS00640 0.27 -0.1 145,980 + LRK53_RS00640 0.27 -0.9 145,981 - LRK53_RS00640 0.27 -0.4 145,981 - LRK53_RS00640 0.27 +1.5 145,981 - LRK53_RS00640 0.27 -1.1 145,981 - LRK53_RS00640 0.27 -1.9 145,981 - LRK53_RS00640 0.27 -0.5 146,163 + LRK53_RS00640 0.56 -0.8 146,164 - LRK53_RS00640 0.56 +1.1 146,307 + LRK53_RS00640 0.78 +0.6 146,308 - LRK53_RS00640 0.79 -1.9 146,308 - LRK53_RS00640 0.79 -0.5 146,308 - LRK53_RS00640 0.79 -0.3 146,308 - LRK53_RS00640 0.79 +0.8 146,308 - LRK53_RS00640 0.79 +0.3 146,343 + LRK53_RS00640 0.84 -0.1 146,343 + LRK53_RS00640 0.84 +0.7 146,343 + LRK53_RS00640 0.84 -2.2 146,343 + LRK53_RS00640 0.84 +1.8 146,343 + LRK53_RS00640 0.84 -2.7 146,343 + LRK53_RS00640 0.84 -0.4 146,343 + LRK53_RS00640 0.84 -0.0 146,343 + LRK53_RS00640 0.84 +0.1 146,343 + LRK53_RS00640 0.84 +0.2 146,343 + LRK53_RS00640 0.84 +0.2 146,343 + LRK53_RS00640 0.84 -2.2 146,343 + LRK53_RS00640 0.84 -1.1 146,343 + LRK53_RS00640 0.84 -0.5 146,343 + LRK53_RS00640 0.84 -2.2 146,344 - LRK53_RS00640 0.84 +0.1 146,344 - LRK53_RS00640 0.84 -0.9 146,344 - LRK53_RS00640 0.84 -0.9 146,344 - LRK53_RS00640 0.84 -0.4 146,344 - LRK53_RS00640 0.84 -0.4 146,344 - LRK53_RS00640 0.84 -1.3 146,344 - LRK53_RS00640 0.84 +1.1 146,344 - LRK53_RS00640 0.84 +0.5 146,344 - LRK53_RS00640 0.84 +0.1 146,344 - LRK53_RS00640 0.84 -1.5 146,344 - LRK53_RS00640 0.84 -0.0 146,344 - LRK53_RS00640 0.84 -0.3 146,344 - LRK53_RS00640 0.84 +1.5 146,344 - LRK53_RS00640 0.84 -0.9 146,344 - LRK53_RS00640 0.84 +0.2 146,344 - LRK53_RS00640 0.84 +0.4 146,344 - LRK53_RS00640 0.84 -0.3 146,344 - LRK53_RS00640 0.84 +0.9 146,344 - LRK53_RS00640 0.84 +2.5 146,344 - LRK53_RS00640 0.84 -0.0 146,344 - LRK53_RS00640 0.84 +0.2 146,344 - LRK53_RS00640 0.84 +0.0 146,344 - LRK53_RS00640 0.84 +0.1 146,490 + +3.1 146,491 - -0.4 146,491 - +1.4 146,491 - +0.1 146,492 + +0.7 146,492 + -2.0 146,492 + -0.3 146,492 + -0.1 146,492 + -0.1 146,492 + -0.2 146,493 - -1.4 146,493 - +0.1 146,493 - +0.2 146,493 - +0.3 146,493 - -0.5 146,493 - -0.8 146,498 + -1.9 146,498 + +1.1 146,498 + -2.3 146,498 + -0.1 146,498 + -1.3 146,498 + -1.4 146,498 + +1.5 146,499 - -1.8 146,499 - -0.5 146,499 - -0.6 146,499 - -0.1 146,499 - -0.6 146,499 - -0.4 146,499 - -0.8 146,499 - -1.0 146,601 + -1.4 146,794 + LRK53_RS00645 0.28 -0.5 146,794 + LRK53_RS00645 0.28 -0.3 146,795 - LRK53_RS00645 0.28 -0.3 146,870 - LRK53_RS00645 0.40 +0.2 146,959 + LRK53_RS00645 0.54 -1.0 146,959 + LRK53_RS00645 0.54 -0.3 146,960 - LRK53_RS00645 0.54 -0.5 147,256 - -2.3 147,435 + -1.1 147,435 + +0.5 147,435 + -1.2 147,435 + +0.1 147,436 - -0.7 147,436 - -1.9 147,436 - -0.8 147,436 - +1.6 147,642 + LRK53_RS00650 0.27 +0.5 147,642 + LRK53_RS00650 0.27 -0.9 147,642 + LRK53_RS00650 0.27 +1.0 147,642 + LRK53_RS00650 0.27 -0.1 147,642 + LRK53_RS00650 0.27 +0.1 147,642 + LRK53_RS00650 0.27 -0.9 147,642 + LRK53_RS00650 0.27 +1.2 147,642 + LRK53_RS00650 0.27 -2.2 147,642 + LRK53_RS00650 0.27 -0.6 147,642 + LRK53_RS00650 0.27 +0.4 147,642 + LRK53_RS00650 0.27 +0.1 147,642 + LRK53_RS00650 0.27 +0.7 147,642 + LRK53_RS00650 0.27 +0.3 147,642 + LRK53_RS00650 0.27 +0.2 147,643 - LRK53_RS00650 0.27 -0.7 147,643 - LRK53_RS00650 0.27 -1.2 147,643 - LRK53_RS00650 0.27 -0.4 147,643 - LRK53_RS00650 0.27 +0.2 147,643 - LRK53_RS00650 0.27 +0.2 147,643 - LRK53_RS00650 0.27 -0.9 147,643 - LRK53_RS00650 0.27 -0.2 147,643 - LRK53_RS00650 0.27 +1.2 147,643 - LRK53_RS00650 0.27 -1.7 147,643 - LRK53_RS00650 0.27 +0.3 147,643 - LRK53_RS00650 0.27 -0.1 147,643 - LRK53_RS00650 0.27 +0.8 147,643 - LRK53_RS00650 0.27 -0.3 147,643 - LRK53_RS00650 0.27 -2.1 147,643 - LRK53_RS00650 0.27 +0.1 147,643 - LRK53_RS00650 0.27 -0.2 147,643 - LRK53_RS00650 0.27 +0.7 147,643 - LRK53_RS00650 0.27 -0.8 147,643 - LRK53_RS00650 0.27 +0.7 147,643 - LRK53_RS00650 0.27 -0.9 147,644 + LRK53_RS00650 0.28 -1.6 147,644 + LRK53_RS00650 0.28 +1.6 147,644 + LRK53_RS00650 0.28 -0.6 147,644 + LRK53_RS00650 0.28 +1.1 147,644 + LRK53_RS00650 0.28 +0.7 147,644 + LRK53_RS00650 0.28 -0.1 147,644 + LRK53_RS00650 0.28 -1.0 147,644 + LRK53_RS00650 0.28 +0.3 147,644 + LRK53_RS00650 0.28 -1.4 147,644 + LRK53_RS00650 0.28 -0.1 147,644 + LRK53_RS00650 0.28 -2.8 147,645 - LRK53_RS00650 0.28 -0.3 147,645 - LRK53_RS00650 0.28 -1.0 147,645 - LRK53_RS00650 0.28 -0.4 147,645 - LRK53_RS00650 0.28 -1.4 147,645 - LRK53_RS00650 0.28 -2.2 147,645 - LRK53_RS00650 0.28 +1.5 147,645 - LRK53_RS00650 0.28 -0.5 147,645 - LRK53_RS00650 0.28 -0.1 147,645 - LRK53_RS00650 0.28 +0.2 147,645 - LRK53_RS00650 0.28 -1.1 147,645 - LRK53_RS00650 0.28 +0.1 147,654 + LRK53_RS00650 0.29 -1.5 147,655 - LRK53_RS00650 0.29 -0.6 147,655 - LRK53_RS00650 0.29 +0.7 147,655 - LRK53_RS00650 0.29 +0.1 147,924 + LRK53_RS00650 0.67 -0.3 147,924 + LRK53_RS00650 0.67 -0.8 147,924 + LRK53_RS00650 0.67 -0.0 147,924 + LRK53_RS00650 0.67 +1.1 147,924 + LRK53_RS00650 0.67 -0.4 147,924 + LRK53_RS00650 0.67 -1.8 147,924 + LRK53_RS00650 0.67 +0.6 147,925 - LRK53_RS00650 0.67 +1.5 147,925 - LRK53_RS00650 0.67 +1.0 147,925 - LRK53_RS00650 0.67 +1.1 147,925 - LRK53_RS00650 0.67 -1.1 147,925 - LRK53_RS00650 0.67 +2.8 147,925 - LRK53_RS00650 0.67 +0.6 147,925 - LRK53_RS00650 0.67 +1.9 147,925 - LRK53_RS00650 0.67 -0.9 147,925 - LRK53_RS00650 0.67 +2.1 147,925 - LRK53_RS00650 0.67 -2.1 148,011 + LRK53_RS00650 0.80 +0.2 148,011 + LRK53_RS00650 0.80 -0.8 148,163 - +0.9 148,163 - -2.2 148,163 - +0.8
Or see this region's nucleotide sequence