Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00565 and LRK53_RS00570 are separated by 281 nucleotides LRK53_RS00570 and LRK53_RS00575 are separated by 105 nucleotides
LRK53_RS00565: LRK53_RS00565 - ATP-binding protein, at 125,334 to 126,344
_RS00565
LRK53_RS00570: LRK53_RS00570 - nitrogen regulation protein NR(I), at 126,626 to 128,005
_RS00570
LRK53_RS00575: LRK53_RS00575 - glycosyl transferase family 36, at 128,111 to 131,980
_RS00575
Position (kb) 126
127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 125.964 kb on + strand, within LRK53_RS00565 at 125.964 kb on + strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 126.315 kb on + strand at 126.315 kb on + strand at 126.316 kb on - strand at 126.316 kb on - strand at 126.316 kb on - strand at 126.316 kb on - strand at 126.512 kb on + strand at 126.512 kb on + strand at 126.512 kb on + strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.516 kb on + strand at 126.516 kb on + strand at 126.516 kb on + strand at 126.517 kb on - strand at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.900 kb on - strand, within LRK53_RS00570 at 126.921 kb on - strand, within LRK53_RS00570 at 126.921 kb on - strand, within LRK53_RS00570 at 126.921 kb on - strand, within LRK53_RS00570 at 127.400 kb on + strand, within LRK53_RS00570 at 127.401 kb on - strand, within LRK53_RS00570 at 127.401 kb on - strand, within LRK53_RS00570 at 127.673 kb on + strand, within LRK53_RS00570 at 127.735 kb on + strand, within LRK53_RS00570 at 127.735 kb on + strand, within LRK53_RS00570 at 127.736 kb on - strand, within LRK53_RS00570 at 127.960 kb on + strand at 127.960 kb on + strand at 127.960 kb on + strand at 127.960 kb on + strand at 127.961 kb on - strand at 127.961 kb on - strand at 128.112 kb on + strand at 128.183 kb on + strand at 128.183 kb on + strand at 128.183 kb on + strand at 128.183 kb on + strand at 128.184 kb on - strand at 128.256 kb on + strand at 128.257 kb on - strand at 128.290 kb on - strand at 128.391 kb on + strand at 128.415 kb on + strand at 128.416 kb on - strand at 128.416 kb on - strand at 128.416 kb on - strand at 128.416 kb on - strand at 128.416 kb on - strand at 128.457 kb on + strand at 128.478 kb on + strand at 128.478 kb on + strand at 128.478 kb on + strand at 128.478 kb on + strand at 128.478 kb on + strand at 128.478 kb on + strand at 128.478 kb on + strand at 128.479 kb on - strand at 128.479 kb on - strand at 128.479 kb on - strand at 128.479 kb on - strand at 128.494 kb on - strand at 128.494 kb on - strand at 128.619 kb on + strand, within LRK53_RS00575 at 128.619 kb on + strand, within LRK53_RS00575 at 128.620 kb on - strand, within LRK53_RS00575 at 128.620 kb on - strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.662 kb on + strand, within LRK53_RS00575 at 128.663 kb on - strand, within LRK53_RS00575 at 128.663 kb on - strand, within LRK53_RS00575 at 128.664 kb on + strand, within LRK53_RS00575 at 128.664 kb on + strand, within LRK53_RS00575 at 128.664 kb on + strand, within LRK53_RS00575 at 128.664 kb on + strand, within LRK53_RS00575 at 128.664 kb on + strand, within LRK53_RS00575 at 128.664 kb on + strand, within LRK53_RS00575 at 128.665 kb on - strand, within LRK53_RS00575 at 128.874 kb on + strand, within LRK53_RS00575 at 128.874 kb on + strand, within LRK53_RS00575 at 128.877 kb on + strand, within LRK53_RS00575
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM remove 125,964 + LRK53_RS00565 0.62 +0.1 125,964 + LRK53_RS00565 0.62 -1.5 125,965 - LRK53_RS00565 0.62 +0.2 125,965 - LRK53_RS00565 0.62 -0.9 125,965 - LRK53_RS00565 0.62 +0.5 125,965 - LRK53_RS00565 0.62 -0.6 125,965 - LRK53_RS00565 0.62 -0.1 125,965 - LRK53_RS00565 0.62 -1.2 125,965 - LRK53_RS00565 0.62 -1.6 126,315 + -1.1 126,315 + -1.2 126,316 - +0.5 126,316 - +0.2 126,316 - +0.1 126,316 - +1.1 126,512 + -1.1 126,512 + -0.6 126,512 + +0.8 126,513 - -2.0 126,513 - -0.1 126,513 - -2.4 126,513 - +0.1 126,513 - -0.9 126,516 + -1.0 126,516 + +1.5 126,516 + -0.0 126,517 - -0.2 126,869 + LRK53_RS00570 0.18 -1.9 126,869 + LRK53_RS00570 0.18 -1.3 126,869 + LRK53_RS00570 0.18 +0.7 126,869 + LRK53_RS00570 0.18 -0.9 126,869 + LRK53_RS00570 0.18 -0.0 126,869 + LRK53_RS00570 0.18 -0.1 126,870 - LRK53_RS00570 0.18 +0.5 126,870 - LRK53_RS00570 0.18 -0.3 126,870 - LRK53_RS00570 0.18 +0.2 126,870 - LRK53_RS00570 0.18 +0.2 126,870 - LRK53_RS00570 0.18 -1.0 126,870 - LRK53_RS00570 0.18 -1.6 126,870 - LRK53_RS00570 0.18 -0.4 126,870 - LRK53_RS00570 0.18 +0.5 126,900 - LRK53_RS00570 0.20 -1.5 126,921 - LRK53_RS00570 0.21 -0.4 126,921 - LRK53_RS00570 0.21 -0.8 126,921 - LRK53_RS00570 0.21 -0.5 127,400 + LRK53_RS00570 0.56 -0.7 127,401 - LRK53_RS00570 0.56 -0.2 127,401 - LRK53_RS00570 0.56 -0.6 127,673 + LRK53_RS00570 0.76 -1.8 127,735 + LRK53_RS00570 0.80 -2.1 127,735 + LRK53_RS00570 0.80 -0.4 127,736 - LRK53_RS00570 0.80 -0.6 127,960 + -1.6 127,960 + -1.2 127,960 + -2.1 127,960 + -1.4 127,961 - -0.8 127,961 - +0.6 128,112 + +0.2 128,183 + -0.9 128,183 + -1.4 128,183 + -0.9 128,183 + +1.1 128,184 - -0.9 128,256 + +0.9 128,257 - +1.5 128,290 - -2.4 128,391 + -0.8 128,415 + -0.7 128,416 - -1.2 128,416 - +0.0 128,416 - -0.8 128,416 - -0.4 128,416 - +1.2 128,457 + -0.8 128,478 + -0.1 128,478 + -0.3 128,478 + +1.1 128,478 + +0.1 128,478 + -0.9 128,478 + -3.2 128,478 + -1.4 128,479 - -0.3 128,479 - +1.5 128,479 - -0.2 128,479 - -0.9 128,494 - -0.7 128,494 - -2.1 128,619 + LRK53_RS00575 0.13 -1.4 128,619 + LRK53_RS00575 0.13 -1.5 128,620 - LRK53_RS00575 0.13 -0.1 128,620 - LRK53_RS00575 0.13 +0.1 128,662 + LRK53_RS00575 0.14 -0.5 128,662 + LRK53_RS00575 0.14 -1.4 128,662 + LRK53_RS00575 0.14 -0.5 128,662 + LRK53_RS00575 0.14 -0.3 128,662 + LRK53_RS00575 0.14 +0.1 128,662 + LRK53_RS00575 0.14 -0.7 128,662 + LRK53_RS00575 0.14 +0.7 128,662 + LRK53_RS00575 0.14 +0.5 128,662 + LRK53_RS00575 0.14 -0.6 128,663 - LRK53_RS00575 0.14 -1.3 128,663 - LRK53_RS00575 0.14 +1.1 128,664 + LRK53_RS00575 0.14 +1.1 128,664 + LRK53_RS00575 0.14 -1.7 128,664 + LRK53_RS00575 0.14 -0.8 128,664 + LRK53_RS00575 0.14 +1.1 128,664 + LRK53_RS00575 0.14 +1.1 128,664 + LRK53_RS00575 0.14 -0.6 128,665 - LRK53_RS00575 0.14 -0.5 128,874 + LRK53_RS00575 0.20 -0.1 128,874 + LRK53_RS00575 0.20 -0.8 128,877 + LRK53_RS00575 0.20 -0.1
Or see this region's nucleotide sequence