Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00565

Experiment: biofilm; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00560 and LRK53_RS00565 are separated by 43 nucleotidesLRK53_RS00565 and LRK53_RS00570 are separated by 281 nucleotides LRK53_RS00560: LRK53_RS00560 - ABC transporter ATP-binding protein/permease, at 123,524 to 125,290 _RS00560 LRK53_RS00565: LRK53_RS00565 - ATP-binding protein, at 125,334 to 126,344 _RS00565 LRK53_RS00570: LRK53_RS00570 - nitrogen regulation protein NR(I), at 126,626 to 128,005 _RS00570 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1at 124.436 kb on + strand, within LRK53_RS00560at 124.437 kb on - strand, within LRK53_RS00560at 124.437 kb on - strand, within LRK53_RS00560at 124.437 kb on - strand, within LRK53_RS00560at 124.437 kb on - strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.802 kb on + strand, within LRK53_RS00560at 124.803 kb on - strand, within LRK53_RS00560at 124.803 kb on - strand, within LRK53_RS00560at 124.803 kb on - strand, within LRK53_RS00560at 125.964 kb on + strand, within LRK53_RS00565at 125.964 kb on + strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 126.315 kb on + strandat 126.315 kb on + strandat 126.316 kb on - strandat 126.316 kb on - strandat 126.316 kb on - strandat 126.316 kb on - strandat 126.512 kb on + strandat 126.512 kb on + strandat 126.512 kb on + strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.516 kb on + strandat 126.516 kb on + strandat 126.516 kb on + strandat 126.517 kb on - strandat 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.900 kb on - strand, within LRK53_RS00570at 126.921 kb on - strand, within LRK53_RS00570at 126.921 kb on - strand, within LRK53_RS00570at 126.921 kb on - strand, within LRK53_RS00570

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Aluminum chloride 1mM
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124,436 + LRK53_RS00560 0.52 -0.8
124,437 - LRK53_RS00560 0.52 -1.3
124,437 - LRK53_RS00560 0.52 +0.6
124,437 - LRK53_RS00560 0.52 +0.4
124,437 - LRK53_RS00560 0.52 -0.3
124,508 + LRK53_RS00560 0.56 +0.2
124,508 + LRK53_RS00560 0.56 -2.4
124,508 + LRK53_RS00560 0.56 -1.2
124,508 + LRK53_RS00560 0.56 +0.2
124,508 + LRK53_RS00560 0.56 -1.8
124,508 + LRK53_RS00560 0.56 -0.9
124,508 + LRK53_RS00560 0.56 -0.4
124,508 + LRK53_RS00560 0.56 -1.2
124,508 + LRK53_RS00560 0.56 +1.5
124,509 - LRK53_RS00560 0.56 +0.2
124,509 - LRK53_RS00560 0.56 -0.8
124,509 - LRK53_RS00560 0.56 -2.7
124,509 - LRK53_RS00560 0.56 +0.7
124,509 - LRK53_RS00560 0.56 -0.3
124,509 - LRK53_RS00560 0.56 -0.4
124,509 - LRK53_RS00560 0.56 -0.5
124,529 + LRK53_RS00560 0.57 -1.4
124,529 + LRK53_RS00560 0.57 -0.4
124,529 + LRK53_RS00560 0.57 -0.9
124,529 + LRK53_RS00560 0.57 +0.2
124,529 + LRK53_RS00560 0.57 -1.9
124,529 + LRK53_RS00560 0.57 +0.4
124,529 + LRK53_RS00560 0.57 +0.2
124,529 + LRK53_RS00560 0.57 +0.1
124,529 + LRK53_RS00560 0.57 +0.4
124,530 - LRK53_RS00560 0.57 -0.1
124,530 - LRK53_RS00560 0.57 +0.7
124,530 - LRK53_RS00560 0.57 -1.6
124,530 - LRK53_RS00560 0.57 -1.5
124,530 - LRK53_RS00560 0.57 +0.7
124,530 - LRK53_RS00560 0.57 -1.6
124,530 - LRK53_RS00560 0.57 +0.2
124,530 - LRK53_RS00560 0.57 -1.3
124,530 - LRK53_RS00560 0.57 -0.3
124,530 - LRK53_RS00560 0.57 +0.4
124,530 - LRK53_RS00560 0.57 +1.5
124,802 + LRK53_RS00560 0.72 +1.1
124,803 - LRK53_RS00560 0.72 -0.9
124,803 - LRK53_RS00560 0.72 +0.1
124,803 - LRK53_RS00560 0.72 -0.1
125,964 + LRK53_RS00565 0.62 +0.1
125,964 + LRK53_RS00565 0.62 -1.5
125,965 - LRK53_RS00565 0.62 +0.2
125,965 - LRK53_RS00565 0.62 -0.9
125,965 - LRK53_RS00565 0.62 +0.5
125,965 - LRK53_RS00565 0.62 -0.6
125,965 - LRK53_RS00565 0.62 -0.1
125,965 - LRK53_RS00565 0.62 -1.2
125,965 - LRK53_RS00565 0.62 -1.6
126,315 + -1.1
126,315 + -1.2
126,316 - +0.5
126,316 - +0.2
126,316 - +0.1
126,316 - +1.1
126,512 + -1.1
126,512 + -0.6
126,512 + +0.8
126,513 - -2.0
126,513 - -0.1
126,513 - -2.4
126,513 - +0.1
126,513 - -0.9
126,516 + -1.0
126,516 + +1.5
126,516 + -0.0
126,517 - -0.2
126,869 + LRK53_RS00570 0.18 -1.9
126,869 + LRK53_RS00570 0.18 -1.3
126,869 + LRK53_RS00570 0.18 +0.7
126,869 + LRK53_RS00570 0.18 -0.9
126,869 + LRK53_RS00570 0.18 -0.0
126,869 + LRK53_RS00570 0.18 -0.1
126,870 - LRK53_RS00570 0.18 +0.5
126,870 - LRK53_RS00570 0.18 -0.3
126,870 - LRK53_RS00570 0.18 +0.2
126,870 - LRK53_RS00570 0.18 +0.2
126,870 - LRK53_RS00570 0.18 -1.0
126,870 - LRK53_RS00570 0.18 -1.6
126,870 - LRK53_RS00570 0.18 -0.4
126,870 - LRK53_RS00570 0.18 +0.5
126,900 - LRK53_RS00570 0.20 -1.5
126,921 - LRK53_RS00570 0.21 -0.4
126,921 - LRK53_RS00570 0.21 -0.8
126,921 - LRK53_RS00570 0.21 -0.5

Or see this region's nucleotide sequence