Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS40020

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS40015 and QEN71_RS40020 are separated by 63 nucleotidesQEN71_RS40020 and QEN71_RS40025 overlap by 4 nucleotidesQEN71_RS40025 and QEN71_RS40030 are separated by 548 nucleotides QEN71_RS40015: QEN71_RS40015 - IS66 family transposase, at 55,552 to 57,117 _RS40015 QEN71_RS40020: QEN71_RS40020 - IS66 family insertion sequence element accessory protein TnpB, at 57,181 to 57,516 _RS40020 QEN71_RS40025: QEN71_RS40025 - transposase, at 57,513 to 57,905 _RS40025 QEN71_RS40030: QEN71_RS40030 - IS5 family transposase, at 58,454 to 59,395 _RS40030 Position (kb) 57 58Strain fitness (log2 ratio) -1 0 1at 57.655 kb on - strand, within QEN71_RS40025at 57.655 kb on - strand, within QEN71_RS40025at 57.655 kb on - strand, within QEN71_RS40025at 57.910 kb on + strandat 57.929 kb on - strandat 57.929 kb on - strandat 58.006 kb on - strandat 58.006 kb on - strandat 58.308 kb on - strandat 58.333 kb on - strandat 58.353 kb on + strandat 58.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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57,655 - QEN71_RS40025 0.36 -0.1
57,655 - QEN71_RS40025 0.36 -0.1
57,655 - QEN71_RS40025 0.36 -0.1
57,910 + -1.5
57,929 - -0.9
57,929 - +0.3
58,006 - +1.4
58,006 - -0.8
58,308 - -0.7
58,333 - -0.7
58,353 + +0.3
58,354 - -0.3

Or see this region's nucleotide sequence