Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS34815 and QEN71_RS34820 overlap by 4 nucleotides QEN71_RS34820 and QEN71_RS34825 overlap by 1 nucleotides
QEN71_RS34815: QEN71_RS34815 - hypothetical protein, at 1,132,315 to 1,135,053
_RS34815
QEN71_RS34820: QEN71_RS34820 - alpha-amylase family glycosyl hydrolase, at 1,135,050 to 1,136,888
_RS34820
QEN71_RS34825: QEN71_RS34825 - hypothetical protein, at 1,136,888 to 1,137,352
_RS34825
Position (kb)
1135
1136
1137 Strain fitness (log2 ratio)
-2
-1
0
1 at 1134.275 kb on - strand, within QEN71_RS34815 at 1134.433 kb on + strand, within QEN71_RS34815 at 1134.434 kb on - strand, within QEN71_RS34815 at 1134.486 kb on - strand, within QEN71_RS34815 at 1134.647 kb on + strand, within QEN71_RS34815 at 1134.688 kb on + strand, within QEN71_RS34815 at 1134.689 kb on - strand, within QEN71_RS34815 at 1134.726 kb on + strand, within QEN71_RS34815 at 1134.735 kb on - strand, within QEN71_RS34815 at 1134.735 kb on - strand, within QEN71_RS34815 at 1134.902 kb on + strand at 1134.903 kb on - strand at 1135.045 kb on + strand at 1135.046 kb on - strand at 1135.046 kb on - strand at 1135.336 kb on + strand, within QEN71_RS34820 at 1135.337 kb on - strand, within QEN71_RS34820 at 1135.466 kb on - strand, within QEN71_RS34820 at 1135.475 kb on - strand, within QEN71_RS34820 at 1135.813 kb on - strand, within QEN71_RS34820 at 1135.843 kb on + strand, within QEN71_RS34820 at 1135.844 kb on - strand, within QEN71_RS34820 at 1135.844 kb on - strand, within QEN71_RS34820 at 1136.117 kb on - strand, within QEN71_RS34820 at 1136.209 kb on + strand, within QEN71_RS34820 at 1136.273 kb on - strand, within QEN71_RS34820 at 1136.377 kb on - strand, within QEN71_RS34820 at 1136.656 kb on + strand, within QEN71_RS34820 at 1136.656 kb on + strand, within QEN71_RS34820 at 1136.657 kb on - strand, within QEN71_RS34820 at 1136.674 kb on + strand, within QEN71_RS34820 at 1136.675 kb on - strand, within QEN71_RS34820 at 1137.197 kb on + strand, within QEN71_RS34825 at 1137.309 kb on + strand at 1137.335 kb on - strand at 1137.493 kb on + strand at 1137.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 1,134,275 - QEN71_RS34815 0.72 +0.3 1,134,433 + QEN71_RS34815 0.77 +0.5 1,134,434 - QEN71_RS34815 0.77 +0.1 1,134,486 - QEN71_RS34815 0.79 +0.6 1,134,647 + QEN71_RS34815 0.85 -1.6 1,134,688 + QEN71_RS34815 0.87 +0.8 1,134,689 - QEN71_RS34815 0.87 +0.6 1,134,726 + QEN71_RS34815 0.88 +1.1 1,134,735 - QEN71_RS34815 0.88 -0.1 1,134,735 - QEN71_RS34815 0.88 -0.8 1,134,902 + +0.4 1,134,903 - -1.2 1,135,045 + -0.7 1,135,046 - -0.3 1,135,046 - -0.8 1,135,336 + QEN71_RS34820 0.16 -0.9 1,135,337 - QEN71_RS34820 0.16 -0.6 1,135,466 - QEN71_RS34820 0.23 -0.1 1,135,475 - QEN71_RS34820 0.23 +1.0 1,135,813 - QEN71_RS34820 0.41 -1.8 1,135,843 + QEN71_RS34820 0.43 +0.6 1,135,844 - QEN71_RS34820 0.43 -0.0 1,135,844 - QEN71_RS34820 0.43 -0.2 1,136,117 - QEN71_RS34820 0.58 -0.1 1,136,209 + QEN71_RS34820 0.63 -0.7 1,136,273 - QEN71_RS34820 0.67 +1.6 1,136,377 - QEN71_RS34820 0.72 -1.6 1,136,656 + QEN71_RS34820 0.87 +0.5 1,136,656 + QEN71_RS34820 0.87 +0.2 1,136,657 - QEN71_RS34820 0.87 +0.1 1,136,674 + QEN71_RS34820 0.88 +0.8 1,136,675 - QEN71_RS34820 0.88 -1.9 1,137,197 + QEN71_RS34825 0.66 -0.9 1,137,309 + +0.6 1,137,335 - +0.9 1,137,493 + -0.8 1,137,791 - -1.5
Or see this region's nucleotide sequence