Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31495

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31485 and QEN71_RS31490 are separated by 5 nucleotidesQEN71_RS31490 and QEN71_RS31495 overlap by 1 nucleotidesQEN71_RS31495 and QEN71_RS31500 are separated by 51 nucleotides QEN71_RS31485: QEN71_RS31485 - ABC transporter substrate-binding protein, at 413,968 to 415,467 _RS31485 QEN71_RS31490: QEN71_RS31490 - ABC transporter permease, at 415,473 to 416,417 _RS31490 QEN71_RS31495: QEN71_RS31495 - ABC transporter permease, at 416,417 to 417,301 _RS31495 QEN71_RS31500: QEN71_RS31500 - gamma-glutamyltransferase family protein, at 417,353 to 418,990 _RS31500 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1at 415.636 kb on - strand, within QEN71_RS31490at 415.666 kb on - strand, within QEN71_RS31490at 415.972 kb on - strand, within QEN71_RS31490at 415.972 kb on - strand, within QEN71_RS31490at 416.106 kb on + strand, within QEN71_RS31490at 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.384 kb on + strandat 416.385 kb on - strandat 416.423 kb on - strandat 416.423 kb on - strandat 416.429 kb on - strandat 416.429 kb on - strandat 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.976 kb on - strand, within QEN71_RS31495at 416.976 kb on - strand, within QEN71_RS31495at 417.029 kb on + strand, within QEN71_RS31495at 417.517 kb on + strand, within QEN71_RS31500at 417.518 kb on - strand, within QEN71_RS31500at 417.995 kb on + strand, within QEN71_RS31500at 417.995 kb on + strand, within QEN71_RS31500at 417.995 kb on + strand, within QEN71_RS31500at 417.996 kb on - strand, within QEN71_RS31500at 418.076 kb on + strand, within QEN71_RS31500at 418.076 kb on + strand, within QEN71_RS31500at 418.077 kb on - strand, within QEN71_RS31500at 418.112 kb on + strand, within QEN71_RS31500at 418.122 kb on - strand, within QEN71_RS31500at 418.277 kb on + strand, within QEN71_RS31500at 418.278 kb on - strand, within QEN71_RS31500at 418.278 kb on - strand, within QEN71_RS31500at 418.283 kb on + strand, within QEN71_RS31500at 418.283 kb on + strand, within QEN71_RS31500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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415,636 - QEN71_RS31490 0.17 -0.1
415,666 - QEN71_RS31490 0.20 +0.5
415,972 - QEN71_RS31490 0.53 -0.6
415,972 - QEN71_RS31490 0.53 +0.8
416,106 + QEN71_RS31490 0.67 +0.5
416,382 + -0.1
416,382 + +1.2
416,382 + -1.0
416,382 + -0.7
416,382 + -0.3
416,382 + -0.4
416,382 + +0.0
416,383 - -2.0
416,383 - -0.6
416,383 - -0.8
416,383 - -2.0
416,383 - +0.2
416,383 - +0.4
416,383 - +0.4
416,383 - -2.0
416,383 - +0.0
416,384 + -0.9
416,385 - -0.6
416,423 - +0.5
416,423 - +1.4
416,429 - -1.2
416,429 - -1.3
416,975 + QEN71_RS31495 0.63 +0.0
416,975 + QEN71_RS31495 0.63 -0.1
416,975 + QEN71_RS31495 0.63 -0.1
416,975 + QEN71_RS31495 0.63 +0.8
416,976 - QEN71_RS31495 0.63 +0.0
416,976 - QEN71_RS31495 0.63 -0.5
417,029 + QEN71_RS31495 0.69 +1.0
417,517 + QEN71_RS31500 0.10 -0.2
417,518 - QEN71_RS31500 0.10 -0.7
417,995 + QEN71_RS31500 0.39 -0.2
417,995 + QEN71_RS31500 0.39 +0.3
417,995 + QEN71_RS31500 0.39 -0.8
417,996 - QEN71_RS31500 0.39 +0.1
418,076 + QEN71_RS31500 0.44 +0.1
418,076 + QEN71_RS31500 0.44 -0.1
418,077 - QEN71_RS31500 0.44 -0.1
418,112 + QEN71_RS31500 0.46 +0.0
418,122 - QEN71_RS31500 0.47 +0.4
418,277 + QEN71_RS31500 0.56 +0.7
418,278 - QEN71_RS31500 0.56 -1.0
418,278 - QEN71_RS31500 0.56 -1.1
418,283 + QEN71_RS31500 0.57 +0.0
418,283 + QEN71_RS31500 0.57 +0.5

Or see this region's nucleotide sequence