Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25365

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25360 and QEN71_RS25365 are separated by 208 nucleotidesQEN71_RS25365 and QEN71_RS25370 are separated by 123 nucleotidesQEN71_RS25370 and QEN71_RS25375 are separated by 10 nucleotidesQEN71_RS25375 and QEN71_RS25380 are separated by 44 nucleotides QEN71_RS25360: QEN71_RS25360 - urease accessory protein UreD, at 5,641,871 to 5,642,752 _RS25360 QEN71_RS25365: QEN71_RS25365 - transporter substrate-binding domain-containing protein, at 5,642,961 to 5,643,764 _RS25365 QEN71_RS25370: QEN71_RS25370 - urease subunit gamma, at 5,643,888 to 5,644,190 _RS25370 QEN71_RS25375: QEN71_RS25375 - urease subunit beta, at 5,644,201 to 5,644,506 _RS25375 QEN71_RS25380: QEN71_RS25380 - urease subunit alpha, at 5,644,551 to 5,646,257 _RS25380 Position (kb) 5642 5643 5644Strain fitness (log2 ratio) -2 -1 0 1 2at 5641.978 kb on + strand, within QEN71_RS25360at 5641.979 kb on - strand, within QEN71_RS25360at 5642.030 kb on + strand, within QEN71_RS25360at 5642.171 kb on + strand, within QEN71_RS25360at 5642.588 kb on - strand, within QEN71_RS25360at 5642.772 kb on - strandat 5642.772 kb on - strandat 5642.802 kb on + strandat 5642.803 kb on - strandat 5642.872 kb on + strandat 5642.872 kb on + strandat 5642.901 kb on - strandat 5643.114 kb on + strand, within QEN71_RS25365at 5643.159 kb on + strand, within QEN71_RS25365at 5643.160 kb on - strand, within QEN71_RS25365at 5643.160 kb on - strand, within QEN71_RS25365at 5643.246 kb on + strand, within QEN71_RS25365at 5643.246 kb on + strand, within QEN71_RS25365at 5643.247 kb on - strand, within QEN71_RS25365at 5643.247 kb on - strand, within QEN71_RS25365at 5643.343 kb on - strand, within QEN71_RS25365at 5643.343 kb on - strand, within QEN71_RS25365at 5643.343 kb on - strand, within QEN71_RS25365at 5643.345 kb on + strand, within QEN71_RS25365at 5643.345 kb on + strand, within QEN71_RS25365at 5643.345 kb on + strand, within QEN71_RS25365at 5643.346 kb on - strand, within QEN71_RS25365at 5643.346 kb on - strand, within QEN71_RS25365at 5643.346 kb on - strand, within QEN71_RS25365at 5643.837 kb on + strandat 5643.837 kb on + strandat 5643.981 kb on + strand, within QEN71_RS25370at 5643.981 kb on + strand, within QEN71_RS25370at 5643.982 kb on - strand, within QEN71_RS25370at 5643.982 kb on - strand, within QEN71_RS25370at 5644.063 kb on - strand, within QEN71_RS25370at 5644.093 kb on + strand, within QEN71_RS25370at 5644.094 kb on - strand, within QEN71_RS25370at 5644.094 kb on - strand, within QEN71_RS25370at 5644.318 kb on + strand, within QEN71_RS25375at 5644.318 kb on + strand, within QEN71_RS25375at 5644.319 kb on - strand, within QEN71_RS25375at 5644.327 kb on + strand, within QEN71_RS25375at 5644.472 kb on - strand, within QEN71_RS25375at 5644.558 kb on + strandat 5644.558 kb on + strandat 5644.558 kb on + strandat 5644.558 kb on + strandat 5644.579 kb on - strandat 5644.660 kb on - strandat 5644.669 kb on - strandat 5644.705 kb on + strandat 5644.706 kb on - strandat 5644.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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5,641,978 + QEN71_RS25360 0.12 +0.6
5,641,979 - QEN71_RS25360 0.12 -0.1
5,642,030 + QEN71_RS25360 0.18 +0.5
5,642,171 + QEN71_RS25360 0.34 +1.4
5,642,588 - QEN71_RS25360 0.81 -1.6
5,642,772 - -0.9
5,642,772 - -1.0
5,642,802 + -0.8
5,642,803 - -1.4
5,642,872 + +0.2
5,642,872 + -1.4
5,642,901 - +1.4
5,643,114 + QEN71_RS25365 0.19 +2.0
5,643,159 + QEN71_RS25365 0.25 -1.7
5,643,160 - QEN71_RS25365 0.25 -0.6
5,643,160 - QEN71_RS25365 0.25 +0.4
5,643,246 + QEN71_RS25365 0.35 -0.4
5,643,246 + QEN71_RS25365 0.35 -0.7
5,643,247 - QEN71_RS25365 0.36 +0.9
5,643,247 - QEN71_RS25365 0.36 -0.6
5,643,343 - QEN71_RS25365 0.48 -0.4
5,643,343 - QEN71_RS25365 0.48 -1.9
5,643,343 - QEN71_RS25365 0.48 +0.1
5,643,345 + QEN71_RS25365 0.48 -0.4
5,643,345 + QEN71_RS25365 0.48 +0.3
5,643,345 + QEN71_RS25365 0.48 -0.6
5,643,346 - QEN71_RS25365 0.48 +0.0
5,643,346 - QEN71_RS25365 0.48 -0.3
5,643,346 - QEN71_RS25365 0.48 +0.1
5,643,837 + -0.3
5,643,837 + -0.0
5,643,981 + QEN71_RS25370 0.31 -0.0
5,643,981 + QEN71_RS25370 0.31 -0.0
5,643,982 - QEN71_RS25370 0.31 +0.6
5,643,982 - QEN71_RS25370 0.31 -0.0
5,644,063 - QEN71_RS25370 0.58 -0.9
5,644,093 + QEN71_RS25370 0.68 +0.3
5,644,094 - QEN71_RS25370 0.68 +0.8
5,644,094 - QEN71_RS25370 0.68 -0.4
5,644,318 + QEN71_RS25375 0.38 -0.4
5,644,318 + QEN71_RS25375 0.38 -0.3
5,644,319 - QEN71_RS25375 0.39 -1.0
5,644,327 + QEN71_RS25375 0.41 -2.6
5,644,472 - QEN71_RS25375 0.89 -0.6
5,644,558 + -0.0
5,644,558 + -0.6
5,644,558 + -0.0
5,644,558 + -0.8
5,644,579 - -0.0
5,644,660 - +0.5
5,644,669 - -2.0
5,644,705 + +0.2
5,644,706 - +1.0
5,644,706 - -0.0

Or see this region's nucleotide sequence