Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS20720 and QEN71_RS20725 are separated by 16 nucleotides QEN71_RS20725 and QEN71_RS20730 are separated by 18 nucleotides QEN71_RS20730 and QEN71_RS20735 are separated by 31 nucleotides QEN71_RS20735 and QEN71_RS20740 are separated by 145 nucleotides
QEN71_RS20720: QEN71_RS20720 - PLP-dependent aminotransferase family protein, at 4,597,290 to 4,598,717
_RS20720
QEN71_RS20725: QEN71_RS20725 - ArsR family transcriptional regulator, at 4,598,734 to 4,599,042
_RS20725
QEN71_RS20730: QEN71_RS20730 - FUSC family protein, at 4,599,061 to 4,600,215
_RS20730
QEN71_RS20735: QEN71_RS20735 - LysE family translocator, at 4,600,247 to 4,600,858
_RS20735
QEN71_RS20740: QEN71_RS20740 - GNAT family N-acetyltransferase, at 4,601,004 to 4,601,534
_RS20740
Position (kb) 4599
4600
4601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4598.148 kb on + strand, within QEN71_RS20720 at 4598.148 kb on + strand, within QEN71_RS20720 at 4598.160 kb on + strand, within QEN71_RS20720 at 4598.160 kb on + strand, within QEN71_RS20720 at 4598.161 kb on - strand, within QEN71_RS20720 at 4598.161 kb on - strand, within QEN71_RS20720 at 4598.173 kb on + strand, within QEN71_RS20720 at 4598.365 kb on - strand, within QEN71_RS20720 at 4598.365 kb on - strand, within QEN71_RS20720 at 4598.500 kb on - strand, within QEN71_RS20720 at 4598.547 kb on + strand, within QEN71_RS20720 at 4598.547 kb on + strand, within QEN71_RS20720 at 4598.547 kb on + strand, within QEN71_RS20720 at 4598.547 kb on + strand, within QEN71_RS20720 at 4598.547 kb on + strand, within QEN71_RS20720 at 4598.548 kb on - strand, within QEN71_RS20720 at 4598.589 kb on + strand at 4598.589 kb on + strand at 4598.590 kb on - strand at 4598.590 kb on - strand at 4598.590 kb on - strand at 4598.590 kb on - strand at 4598.590 kb on - strand at 4598.590 kb on - strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.591 kb on + strand at 4598.592 kb on - strand at 4598.592 kb on - strand at 4598.592 kb on - strand at 4598.592 kb on - strand at 4598.613 kb on + strand at 4598.637 kb on + strand at 4598.637 kb on + strand at 4598.638 kb on - strand at 4598.638 kb on - strand at 4598.643 kb on + strand at 4598.643 kb on + strand at 4598.643 kb on + strand at 4598.643 kb on + strand at 4598.644 kb on - strand at 4598.644 kb on - strand at 4598.816 kb on + strand, within QEN71_RS20725 at 4598.816 kb on + strand, within QEN71_RS20725 at 4598.816 kb on + strand, within QEN71_RS20725 at 4598.816 kb on + strand, within QEN71_RS20725 at 4598.816 kb on + strand, within QEN71_RS20725 at 4598.816 kb on + strand, within QEN71_RS20725 at 4598.816 kb on + strand, within QEN71_RS20725 at 4598.817 kb on - strand, within QEN71_RS20725 at 4598.817 kb on - strand, within QEN71_RS20725 at 4598.817 kb on - strand, within QEN71_RS20725 at 4598.920 kb on + strand, within QEN71_RS20725 at 4599.126 kb on + strand at 4599.126 kb on + strand at 4599.126 kb on + strand at 4599.127 kb on - strand at 4599.127 kb on - strand at 4599.246 kb on + strand, within QEN71_RS20730 at 4599.248 kb on + strand, within QEN71_RS20730 at 4599.248 kb on + strand, within QEN71_RS20730 at 4599.248 kb on + strand, within QEN71_RS20730 at 4599.249 kb on - strand, within QEN71_RS20730 at 4599.249 kb on - strand, within QEN71_RS20730 at 4599.249 kb on - strand, within QEN71_RS20730 at 4599.249 kb on - strand, within QEN71_RS20730 at 4599.512 kb on + strand, within QEN71_RS20730 at 4599.513 kb on - strand, within QEN71_RS20730 at 4599.670 kb on + strand, within QEN71_RS20730 at 4599.670 kb on + strand, within QEN71_RS20730 at 4599.670 kb on + strand, within QEN71_RS20730 at 4599.670 kb on + strand, within QEN71_RS20730 at 4599.671 kb on - strand, within QEN71_RS20730 at 4599.671 kb on - strand, within QEN71_RS20730 at 4599.671 kb on - strand, within QEN71_RS20730 at 4599.671 kb on - strand, within QEN71_RS20730 at 4599.671 kb on - strand, within QEN71_RS20730 at 4599.671 kb on - strand, within QEN71_RS20730 at 4599.671 kb on - strand, within QEN71_RS20730 at 4599.685 kb on + strand, within QEN71_RS20730 at 4599.686 kb on - strand, within QEN71_RS20730 at 4599.791 kb on + strand, within QEN71_RS20730 at 4599.791 kb on + strand, within QEN71_RS20730 at 4599.791 kb on + strand, within QEN71_RS20730 at 4599.792 kb on - strand, within QEN71_RS20730 at 4599.792 kb on - strand, within QEN71_RS20730 at 4599.834 kb on - strand, within QEN71_RS20730 at 4599.861 kb on - strand, within QEN71_RS20730 at 4600.050 kb on + strand, within QEN71_RS20730 at 4600.050 kb on + strand, within QEN71_RS20730 at 4600.473 kb on + strand, within QEN71_RS20735 at 4600.473 kb on + strand, within QEN71_RS20735 at 4600.473 kb on + strand, within QEN71_RS20735 at 4600.473 kb on + strand, within QEN71_RS20735 at 4600.473 kb on + strand, within QEN71_RS20735 at 4600.473 kb on + strand, within QEN71_RS20735 at 4600.473 kb on + strand, within QEN71_RS20735 at 4600.474 kb on - strand, within QEN71_RS20735 at 4600.894 kb on + strand at 4600.894 kb on + strand at 4600.895 kb on - strand at 4600.895 kb on - strand at 4600.895 kb on - strand at 4600.895 kb on - strand at 4600.896 kb on + strand at 4600.897 kb on - strand at 4600.955 kb on + strand at 4600.955 kb on + strand at 4600.955 kb on + strand at 4600.955 kb on + strand at 4600.956 kb on - strand at 4600.956 kb on - strand at 4600.956 kb on - strand at 4600.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 4,598,148 + QEN71_RS20720 0.60 -1.5 4,598,148 + QEN71_RS20720 0.60 -0.1 4,598,160 + QEN71_RS20720 0.61 -0.1 4,598,160 + QEN71_RS20720 0.61 -0.9 4,598,161 - QEN71_RS20720 0.61 +0.1 4,598,161 - QEN71_RS20720 0.61 -1.2 4,598,173 + QEN71_RS20720 0.62 -2.0 4,598,365 - QEN71_RS20720 0.75 -0.6 4,598,365 - QEN71_RS20720 0.75 -1.0 4,598,500 - QEN71_RS20720 0.85 +0.1 4,598,547 + QEN71_RS20720 0.88 -1.3 4,598,547 + QEN71_RS20720 0.88 +0.6 4,598,547 + QEN71_RS20720 0.88 -0.2 4,598,547 + QEN71_RS20720 0.88 +0.4 4,598,547 + QEN71_RS20720 0.88 -0.1 4,598,548 - QEN71_RS20720 0.88 -0.1 4,598,589 + +0.4 4,598,589 + -0.5 4,598,590 - +0.5 4,598,590 - -1.5 4,598,590 - +0.5 4,598,590 - -0.2 4,598,590 - -0.2 4,598,590 - +0.2 4,598,591 + +1.2 4,598,591 + +0.3 4,598,591 + +0.4 4,598,591 + -0.8 4,598,591 + +0.4 4,598,591 + +0.1 4,598,591 + -0.2 4,598,591 + +0.6 4,598,591 + -0.6 4,598,591 + -0.3 4,598,591 + +1.5 4,598,592 - +0.1 4,598,592 - +0.4 4,598,592 - -0.9 4,598,592 - -1.2 4,598,613 + +0.9 4,598,637 + +0.1 4,598,637 + -0.5 4,598,638 - +0.0 4,598,638 - +0.6 4,598,643 + -0.1 4,598,643 + +0.9 4,598,643 + -0.1 4,598,643 + -0.5 4,598,644 - -0.4 4,598,644 - -2.3 4,598,816 + QEN71_RS20725 0.27 +0.6 4,598,816 + QEN71_RS20725 0.27 -0.3 4,598,816 + QEN71_RS20725 0.27 -0.1 4,598,816 + QEN71_RS20725 0.27 -0.9 4,598,816 + QEN71_RS20725 0.27 -0.7 4,598,816 + QEN71_RS20725 0.27 +0.5 4,598,816 + QEN71_RS20725 0.27 -0.5 4,598,817 - QEN71_RS20725 0.27 -1.7 4,598,817 - QEN71_RS20725 0.27 -1.5 4,598,817 - QEN71_RS20725 0.27 -0.6 4,598,920 + QEN71_RS20725 0.60 +0.4 4,599,126 + -1.4 4,599,126 + +1.4 4,599,126 + -2.0 4,599,127 - +1.3 4,599,127 - -0.9 4,599,246 + QEN71_RS20730 0.16 -0.6 4,599,248 + QEN71_RS20730 0.16 -0.1 4,599,248 + QEN71_RS20730 0.16 -0.0 4,599,248 + QEN71_RS20730 0.16 +0.4 4,599,249 - QEN71_RS20730 0.16 -1.4 4,599,249 - QEN71_RS20730 0.16 -0.4 4,599,249 - QEN71_RS20730 0.16 -0.1 4,599,249 - QEN71_RS20730 0.16 -1.8 4,599,512 + QEN71_RS20730 0.39 +2.4 4,599,513 - QEN71_RS20730 0.39 -1.2 4,599,670 + QEN71_RS20730 0.53 +0.4 4,599,670 + QEN71_RS20730 0.53 +0.8 4,599,670 + QEN71_RS20730 0.53 +0.1 4,599,670 + QEN71_RS20730 0.53 +0.6 4,599,671 - QEN71_RS20730 0.53 +0.0 4,599,671 - QEN71_RS20730 0.53 -1.3 4,599,671 - QEN71_RS20730 0.53 +0.4 4,599,671 - QEN71_RS20730 0.53 +0.5 4,599,671 - QEN71_RS20730 0.53 +0.4 4,599,671 - QEN71_RS20730 0.53 +0.1 4,599,671 - QEN71_RS20730 0.53 -1.5 4,599,685 + QEN71_RS20730 0.54 +0.1 4,599,686 - QEN71_RS20730 0.54 -0.4 4,599,791 + QEN71_RS20730 0.63 +0.9 4,599,791 + QEN71_RS20730 0.63 -0.4 4,599,791 + QEN71_RS20730 0.63 -0.4 4,599,792 - QEN71_RS20730 0.63 -1.2 4,599,792 - QEN71_RS20730 0.63 -0.8 4,599,834 - QEN71_RS20730 0.67 -0.2 4,599,861 - QEN71_RS20730 0.69 +0.5 4,600,050 + QEN71_RS20730 0.86 +0.3 4,600,050 + QEN71_RS20730 0.86 +0.8 4,600,473 + QEN71_RS20735 0.37 -0.4 4,600,473 + QEN71_RS20735 0.37 +0.8 4,600,473 + QEN71_RS20735 0.37 +0.1 4,600,473 + QEN71_RS20735 0.37 -0.8 4,600,473 + QEN71_RS20735 0.37 -0.1 4,600,473 + QEN71_RS20735 0.37 +0.3 4,600,473 + QEN71_RS20735 0.37 +0.1 4,600,474 - QEN71_RS20735 0.37 +1.7 4,600,894 + +0.6 4,600,894 + -0.7 4,600,895 - +0.5 4,600,895 - +0.1 4,600,895 - +1.3 4,600,895 - +0.1 4,600,896 + -0.6 4,600,897 - -0.1 4,600,955 + -0.4 4,600,955 + -0.6 4,600,955 + -1.1 4,600,955 + -1.1 4,600,956 - -0.4 4,600,956 - +0.3 4,600,956 - +1.9 4,600,956 - +0.6
Or see this region's nucleotide sequence