Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04230

Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04225 and LRK53_RS04230 are separated by 46 nucleotidesLRK53_RS04230 and LRK53_RS04235 overlap by 11 nucleotides LRK53_RS04225: LRK53_RS04225 - DNA polymerase IV, at 985,118 to 986,212 _RS04225 LRK53_RS04230: LRK53_RS04230 - UPF0104 family protein, at 986,259 to 987,221 _RS04230 LRK53_RS04235: LRK53_RS04235 - hypothetical protein, at 987,211 to 988,125 _RS04235 Position (kb) 986 987 988Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 985.340 kb on + strand, within LRK53_RS04225at 985.340 kb on + strand, within LRK53_RS04225at 985.341 kb on - strand, within LRK53_RS04225at 985.341 kb on - strand, within LRK53_RS04225at 985.685 kb on + strand, within LRK53_RS04225at 985.685 kb on + strand, within LRK53_RS04225at 985.685 kb on + strand, within LRK53_RS04225at 985.685 kb on + strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.686 kb on - strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.707 kb on + strand, within LRK53_RS04225at 985.708 kb on - strand, within LRK53_RS04225at 985.708 kb on - strand, within LRK53_RS04225at 985.708 kb on - strand, within LRK53_RS04225at 985.708 kb on - strand, within LRK53_RS04225at 985.708 kb on - strand, within LRK53_RS04225at 985.875 kb on + strand, within LRK53_RS04225at 985.875 kb on + strand, within LRK53_RS04225at 985.875 kb on + strand, within LRK53_RS04225at 985.876 kb on - strand, within LRK53_RS04225at 985.876 kb on - strand, within LRK53_RS04225at 985.876 kb on - strand, within LRK53_RS04225at 985.876 kb on - strand, within LRK53_RS04225at 985.876 kb on - strand, within LRK53_RS04225at 985.876 kb on - strand, within LRK53_RS04225at 985.876 kb on - strand, within LRK53_RS04225at 985.956 kb on + strand, within LRK53_RS04225at 985.956 kb on + strand, within LRK53_RS04225at 985.957 kb on - strand, within LRK53_RS04225at 985.957 kb on - strand, within LRK53_RS04225at 986.055 kb on + strand, within LRK53_RS04225at 986.055 kb on + strand, within LRK53_RS04225at 986.055 kb on + strand, within LRK53_RS04225at 986.055 kb on + strand, within LRK53_RS04225at 986.055 kb on + strand, within LRK53_RS04225at 986.056 kb on - strand, within LRK53_RS04225at 986.151 kb on + strandat 986.151 kb on + strandat 986.151 kb on + strandat 986.152 kb on - strandat 986.152 kb on - strandat 986.152 kb on - strandat 986.234 kb on + strandat 986.344 kb on + strandat 986.344 kb on + strandat 986.344 kb on + strandat 986.344 kb on + strandat 986.344 kb on + strandat 986.344 kb on + strandat 986.344 kb on + strandat 986.344 kb on + strandat 986.344 kb on + strandat 986.345 kb on - strandat 986.345 kb on - strandat 986.345 kb on - strandat 986.345 kb on - strandat 986.345 kb on - strandat 986.357 kb on - strand, within LRK53_RS04230at 986.357 kb on - strand, within LRK53_RS04230at 986.482 kb on + strand, within LRK53_RS04230at 986.482 kb on + strand, within LRK53_RS04230at 986.482 kb on + strand, within LRK53_RS04230at 986.483 kb on - strand, within LRK53_RS04230at 986.483 kb on - strand, within LRK53_RS04230at 986.483 kb on - strand, within LRK53_RS04230at 986.483 kb on - strand, within LRK53_RS04230at 986.483 kb on - strand, within LRK53_RS04230at 986.483 kb on - strand, within LRK53_RS04230at 986.483 kb on - strand, within LRK53_RS04230at 986.536 kb on + strand, within LRK53_RS04230at 986.536 kb on + strand, within LRK53_RS04230at 986.536 kb on + strand, within LRK53_RS04230at 986.536 kb on + strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.537 kb on - strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.842 kb on + strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 986.843 kb on - strand, within LRK53_RS04230at 987.097 kb on + strand, within LRK53_RS04230at 987.098 kb on - strand, within LRK53_RS04230at 987.098 kb on - strand, within LRK53_RS04230at 987.098 kb on - strand, within LRK53_RS04230at 987.383 kb on + strand, within LRK53_RS04235at 987.383 kb on + strand, within LRK53_RS04235at 987.383 kb on + strand, within LRK53_RS04235at 987.384 kb on - strand, within LRK53_RS04235at 987.384 kb on - strand, within LRK53_RS04235at 987.384 kb on - strand, within LRK53_RS04235at 987.384 kb on - strand, within LRK53_RS04235at 987.384 kb on - strand, within LRK53_RS04235at 987.485 kb on + strand, within LRK53_RS04235at 987.486 kb on - strand, within LRK53_RS04235at 987.557 kb on + strand, within LRK53_RS04235at 987.557 kb on + strand, within LRK53_RS04235at 987.557 kb on + strand, within LRK53_RS04235at 987.558 kb on - strand, within LRK53_RS04235at 987.558 kb on - strand, within LRK53_RS04235at 987.558 kb on - strand, within LRK53_RS04235at 987.558 kb on - strand, within LRK53_RS04235at 987.558 kb on - strand, within LRK53_RS04235at 987.558 kb on - strand, within LRK53_RS04235at 987.558 kb on - strand, within LRK53_RS04235at 987.558 kb on - strand, within LRK53_RS04235at 987.595 kb on + strand, within LRK53_RS04235at 987.614 kb on + strand, within LRK53_RS04235at 987.614 kb on + strand, within LRK53_RS04235at 987.614 kb on + strand, within LRK53_RS04235at 987.615 kb on - strand, within LRK53_RS04235at 987.615 kb on - strand, within LRK53_RS04235at 987.615 kb on - strand, within LRK53_RS04235at 987.615 kb on - strand, within LRK53_RS04235at 987.824 kb on + strand, within LRK53_RS04235at 987.824 kb on + strand, within LRK53_RS04235at 987.824 kb on + strand, within LRK53_RS04235at 987.932 kb on + strand, within LRK53_RS04235at 987.932 kb on + strand, within LRK53_RS04235at 987.932 kb on + strand, within LRK53_RS04235at 987.932 kb on + strand, within LRK53_RS04235at 987.932 kb on + strand, within LRK53_RS04235at 987.932 kb on + strand, within LRK53_RS04235at 987.932 kb on + strand, within LRK53_RS04235at 987.933 kb on - strand, within LRK53_RS04235at 987.933 kb on - strand, within LRK53_RS04235at 987.933 kb on - strand, within LRK53_RS04235at 987.933 kb on - strand, within LRK53_RS04235at 987.933 kb on - strand, within LRK53_RS04235at 987.933 kb on - strand, within LRK53_RS04235

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM
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985,340 + LRK53_RS04225 0.20 -0.1
985,340 + LRK53_RS04225 0.20 +0.2
985,341 - LRK53_RS04225 0.20 +0.0
985,341 - LRK53_RS04225 0.20 -0.5
985,685 + LRK53_RS04225 0.52 +0.2
985,685 + LRK53_RS04225 0.52 -0.2
985,685 + LRK53_RS04225 0.52 -0.3
985,685 + LRK53_RS04225 0.52 -2.5
985,686 - LRK53_RS04225 0.52 -1.9
985,686 - LRK53_RS04225 0.52 -1.9
985,686 - LRK53_RS04225 0.52 +0.5
985,686 - LRK53_RS04225 0.52 +0.6
985,686 - LRK53_RS04225 0.52 -1.0
985,686 - LRK53_RS04225 0.52 -0.3
985,686 - LRK53_RS04225 0.52 -1.7
985,686 - LRK53_RS04225 0.52 +0.7
985,686 - LRK53_RS04225 0.52 -0.5
985,686 - LRK53_RS04225 0.52 +0.4
985,686 - LRK53_RS04225 0.52 -1.7
985,686 - LRK53_RS04225 0.52 -2.2
985,707 + LRK53_RS04225 0.54 -2.1
985,707 + LRK53_RS04225 0.54 +0.0
985,707 + LRK53_RS04225 0.54 +0.8
985,707 + LRK53_RS04225 0.54 +0.0
985,707 + LRK53_RS04225 0.54 -0.7
985,707 + LRK53_RS04225 0.54 +0.2
985,707 + LRK53_RS04225 0.54 +0.2
985,707 + LRK53_RS04225 0.54 +1.4
985,707 + LRK53_RS04225 0.54 -0.4
985,708 - LRK53_RS04225 0.54 +0.0
985,708 - LRK53_RS04225 0.54 +0.1
985,708 - LRK53_RS04225 0.54 +1.5
985,708 - LRK53_RS04225 0.54 -1.1
985,708 - LRK53_RS04225 0.54 -0.4
985,875 + LRK53_RS04225 0.69 +1.5
985,875 + LRK53_RS04225 0.69 -0.8
985,875 + LRK53_RS04225 0.69 +0.9
985,876 - LRK53_RS04225 0.69 -0.6
985,876 - LRK53_RS04225 0.69 -0.7
985,876 - LRK53_RS04225 0.69 -1.1
985,876 - LRK53_RS04225 0.69 -1.3
985,876 - LRK53_RS04225 0.69 -1.5
985,876 - LRK53_RS04225 0.69 +0.2
985,876 - LRK53_RS04225 0.69 +0.2
985,956 + LRK53_RS04225 0.77 -0.1
985,956 + LRK53_RS04225 0.77 +0.2
985,957 - LRK53_RS04225 0.77 +1.1
985,957 - LRK53_RS04225 0.77 -0.8
986,055 + LRK53_RS04225 0.86 -3.3
986,055 + LRK53_RS04225 0.86 -1.1
986,055 + LRK53_RS04225 0.86 -0.2
986,055 + LRK53_RS04225 0.86 +0.2
986,055 + LRK53_RS04225 0.86 -1.2
986,056 - LRK53_RS04225 0.86 -0.1
986,151 + +1.7
986,151 + +0.3
986,151 + -1.1
986,152 - -1.7
986,152 - +1.7
986,152 - -1.6
986,234 + +0.9
986,344 + +0.6
986,344 + -0.5
986,344 + +1.2
986,344 + +0.5
986,344 + -0.3
986,344 + +1.5
986,344 + -0.3
986,344 + -1.3
986,344 + +0.9
986,345 - -0.2
986,345 - -2.1
986,345 - -0.7
986,345 - +0.2
986,345 - -0.7
986,357 - LRK53_RS04230 0.10 -1.7
986,357 - LRK53_RS04230 0.10 +0.3
986,482 + LRK53_RS04230 0.23 -0.9
986,482 + LRK53_RS04230 0.23 +0.5
986,482 + LRK53_RS04230 0.23 +0.7
986,483 - LRK53_RS04230 0.23 -0.2
986,483 - LRK53_RS04230 0.23 -0.5
986,483 - LRK53_RS04230 0.23 -1.6
986,483 - LRK53_RS04230 0.23 -0.8
986,483 - LRK53_RS04230 0.23 +0.2
986,483 - LRK53_RS04230 0.23 -0.4
986,483 - LRK53_RS04230 0.23 -0.1
986,536 + LRK53_RS04230 0.29 -1.0
986,536 + LRK53_RS04230 0.29 -1.5
986,536 + LRK53_RS04230 0.29 -2.0
986,536 + LRK53_RS04230 0.29 -2.8
986,537 - LRK53_RS04230 0.29 +0.8
986,537 - LRK53_RS04230 0.29 -0.0
986,537 - LRK53_RS04230 0.29 -1.8
986,537 - LRK53_RS04230 0.29 -1.0
986,537 - LRK53_RS04230 0.29 -2.1
986,537 - LRK53_RS04230 0.29 -0.4
986,537 - LRK53_RS04230 0.29 +0.8
986,537 - LRK53_RS04230 0.29 -2.2
986,537 - LRK53_RS04230 0.29 +1.6
986,537 - LRK53_RS04230 0.29 +0.3
986,537 - LRK53_RS04230 0.29 +0.3
986,537 - LRK53_RS04230 0.29 +1.5
986,537 - LRK53_RS04230 0.29 -0.8
986,537 - LRK53_RS04230 0.29 +1.0
986,537 - LRK53_RS04230 0.29 +0.0
986,842 + LRK53_RS04230 0.61 +2.0
986,842 + LRK53_RS04230 0.61 -0.7
986,842 + LRK53_RS04230 0.61 -1.2
986,842 + LRK53_RS04230 0.61 -0.1
986,842 + LRK53_RS04230 0.61 +0.2
986,842 + LRK53_RS04230 0.61 +0.3
986,842 + LRK53_RS04230 0.61 -0.6
986,842 + LRK53_RS04230 0.61 +1.2
986,842 + LRK53_RS04230 0.61 -0.5
986,842 + LRK53_RS04230 0.61 +1.3
986,842 + LRK53_RS04230 0.61 -0.2
986,842 + LRK53_RS04230 0.61 -0.8
986,842 + LRK53_RS04230 0.61 +0.1
986,843 - LRK53_RS04230 0.61 -1.2
986,843 - LRK53_RS04230 0.61 -0.8
986,843 - LRK53_RS04230 0.61 -0.4
986,843 - LRK53_RS04230 0.61 -2.0
986,843 - LRK53_RS04230 0.61 +0.7
986,843 - LRK53_RS04230 0.61 -0.3
986,843 - LRK53_RS04230 0.61 -1.0
986,843 - LRK53_RS04230 0.61 -0.3
986,843 - LRK53_RS04230 0.61 -0.8
986,843 - LRK53_RS04230 0.61 -0.2
986,843 - LRK53_RS04230 0.61 +1.2
986,843 - LRK53_RS04230 0.61 -1.1
986,843 - LRK53_RS04230 0.61 +3.2
986,843 - LRK53_RS04230 0.61 -0.4
987,097 + LRK53_RS04230 0.87 +0.0
987,098 - LRK53_RS04230 0.87 -0.3
987,098 - LRK53_RS04230 0.87 +1.6
987,098 - LRK53_RS04230 0.87 -0.1
987,383 + LRK53_RS04235 0.19 -0.5
987,383 + LRK53_RS04235 0.19 -3.1
987,383 + LRK53_RS04235 0.19 -1.3
987,384 - LRK53_RS04235 0.19 +0.8
987,384 - LRK53_RS04235 0.19 -0.1
987,384 - LRK53_RS04235 0.19 +0.0
987,384 - LRK53_RS04235 0.19 -0.8
987,384 - LRK53_RS04235 0.19 -0.8
987,485 + LRK53_RS04235 0.30 +1.0
987,486 - LRK53_RS04235 0.30 -1.2
987,557 + LRK53_RS04235 0.38 +0.5
987,557 + LRK53_RS04235 0.38 -0.9
987,557 + LRK53_RS04235 0.38 -0.9
987,558 - LRK53_RS04235 0.38 -2.1
987,558 - LRK53_RS04235 0.38 +0.3
987,558 - LRK53_RS04235 0.38 -1.8
987,558 - LRK53_RS04235 0.38 -1.2
987,558 - LRK53_RS04235 0.38 -0.3
987,558 - LRK53_RS04235 0.38 +0.1
987,558 - LRK53_RS04235 0.38 -1.2
987,558 - LRK53_RS04235 0.38 -0.4
987,595 + LRK53_RS04235 0.42 -0.9
987,614 + LRK53_RS04235 0.44 -1.6
987,614 + LRK53_RS04235 0.44 +0.4
987,614 + LRK53_RS04235 0.44 -1.8
987,615 - LRK53_RS04235 0.44 -2.1
987,615 - LRK53_RS04235 0.44 +0.2
987,615 - LRK53_RS04235 0.44 -0.0
987,615 - LRK53_RS04235 0.44 -1.1
987,824 + LRK53_RS04235 0.67 -0.5
987,824 + LRK53_RS04235 0.67 -2.4
987,824 + LRK53_RS04235 0.67 -2.8
987,932 + LRK53_RS04235 0.79 -0.5
987,932 + LRK53_RS04235 0.79 -0.2
987,932 + LRK53_RS04235 0.79 +2.9
987,932 + LRK53_RS04235 0.79 +0.3
987,932 + LRK53_RS04235 0.79 -1.5
987,932 + LRK53_RS04235 0.79 -3.2
987,932 + LRK53_RS04235 0.79 -0.8
987,933 - LRK53_RS04235 0.79 +0.3
987,933 - LRK53_RS04235 0.79 -2.0
987,933 - LRK53_RS04235 0.79 -0.7
987,933 - LRK53_RS04235 0.79 -0.1
987,933 - LRK53_RS04235 0.79 -1.1
987,933 - LRK53_RS04235 0.79 -1.1

Or see this region's nucleotide sequence