Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03825

Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03815 and LRK53_RS03820 overlap by 4 nucleotidesLRK53_RS03820 and LRK53_RS03825 overlap by 4 nucleotidesLRK53_RS03825 and LRK53_RS03830 are separated by 223 nucleotidesLRK53_RS03830 and LRK53_RS03835 are separated by 1 nucleotides LRK53_RS03815: LRK53_RS03815 - thiamine phosphate synthase, at 894,813 to 895,421 _RS03815 LRK53_RS03820: LRK53_RS03820 - ThiF family adenylyltransferase, at 895,418 to 896,395 _RS03820 LRK53_RS03825: LRK53_RS03825 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 896,392 to 897,186 _RS03825 LRK53_RS03830: LRK53_RS03830 - transposase, at 897,410 to 897,820 _RS03830 LRK53_RS03835: LRK53_RS03835 - IS630 family transposase, at 897,822 to 898,403 _RS03835 Position (kb) 896 897 898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 895.626 kb on - strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 896.350 kb on + strandat 896.350 kb on + strandat 896.485 kb on + strand, within LRK53_RS03825at 896.485 kb on + strand, within LRK53_RS03825at 896.534 kb on + strand, within LRK53_RS03825at 896.535 kb on - strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.580 kb on - strand, within LRK53_RS03825at 896.580 kb on - strand, within LRK53_RS03825at 896.580 kb on - strand, within LRK53_RS03825at 896.580 kb on - strand, within LRK53_RS03825at 896.650 kb on + strand, within LRK53_RS03825at 896.650 kb on + strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.997 kb on - strand, within LRK53_RS03825at 896.997 kb on - strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM
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895,626 - LRK53_RS03820 0.21 -2.5
895,698 + LRK53_RS03820 0.29 -0.6
895,698 + LRK53_RS03820 0.29 -1.4
895,698 + LRK53_RS03820 0.29 -2.2
895,698 + LRK53_RS03820 0.29 -0.1
895,698 + LRK53_RS03820 0.29 -1.4
895,698 + LRK53_RS03820 0.29 -0.2
895,698 + LRK53_RS03820 0.29 +0.1
895,698 + LRK53_RS03820 0.29 -1.9
895,698 + LRK53_RS03820 0.29 +0.4
895,699 - LRK53_RS03820 0.29 -0.2
895,699 - LRK53_RS03820 0.29 -1.2
895,699 - LRK53_RS03820 0.29 -0.7
895,699 - LRK53_RS03820 0.29 +0.6
895,699 - LRK53_RS03820 0.29 +0.5
895,699 - LRK53_RS03820 0.29 -0.3
895,699 - LRK53_RS03820 0.29 -1.6
895,699 - LRK53_RS03820 0.29 -0.2
895,802 + LRK53_RS03820 0.39 +0.1
895,802 + LRK53_RS03820 0.39 +0.3
895,802 + LRK53_RS03820 0.39 +0.2
895,802 + LRK53_RS03820 0.39 -0.6
895,802 + LRK53_RS03820 0.39 +0.1
895,802 + LRK53_RS03820 0.39 -0.2
895,802 + LRK53_RS03820 0.39 +0.1
895,802 + LRK53_RS03820 0.39 -0.2
895,802 + LRK53_RS03820 0.39 -0.0
895,802 + LRK53_RS03820 0.39 -1.1
895,802 + LRK53_RS03820 0.39 -1.9
895,802 + LRK53_RS03820 0.39 -0.2
895,803 - LRK53_RS03820 0.39 +2.9
895,803 - LRK53_RS03820 0.39 -0.3
895,803 - LRK53_RS03820 0.39 -1.6
895,803 - LRK53_RS03820 0.39 -1.6
895,803 - LRK53_RS03820 0.39 +0.1
895,803 - LRK53_RS03820 0.39 +1.0
895,803 - LRK53_RS03820 0.39 +0.8
895,803 - LRK53_RS03820 0.39 -0.2
896,350 + -0.1
896,350 + -0.1
896,485 + LRK53_RS03825 0.12 -0.2
896,485 + LRK53_RS03825 0.12 -1.8
896,534 + LRK53_RS03825 0.18 -1.4
896,535 - LRK53_RS03825 0.18 -0.9
896,579 + LRK53_RS03825 0.24 +2.1
896,579 + LRK53_RS03825 0.24 -2.7
896,579 + LRK53_RS03825 0.24 -0.6
896,579 + LRK53_RS03825 0.24 -1.3
896,579 + LRK53_RS03825 0.24 -1.2
896,579 + LRK53_RS03825 0.24 -2.0
896,579 + LRK53_RS03825 0.24 -1.5
896,579 + LRK53_RS03825 0.24 -1.2
896,580 - LRK53_RS03825 0.24 +1.4
896,580 - LRK53_RS03825 0.24 -1.4
896,580 - LRK53_RS03825 0.24 +1.5
896,580 - LRK53_RS03825 0.24 +0.4
896,650 + LRK53_RS03825 0.32 -1.7
896,650 + LRK53_RS03825 0.32 -1.1
896,651 - LRK53_RS03825 0.33 +0.7
896,651 - LRK53_RS03825 0.33 -0.5
896,651 - LRK53_RS03825 0.33 -0.5
896,651 - LRK53_RS03825 0.33 -0.7
896,651 - LRK53_RS03825 0.33 -0.8
896,997 - LRK53_RS03825 0.76 -1.7
896,997 - LRK53_RS03825 0.76 -0.5
897,100 + LRK53_RS03825 0.89 -0.9
897,100 + LRK53_RS03825 0.89 -0.4
897,100 + LRK53_RS03825 0.89 -1.2
897,100 + LRK53_RS03825 0.89 -0.1
897,100 + LRK53_RS03825 0.89 -0.2
897,100 + LRK53_RS03825 0.89 -0.1
897,100 + LRK53_RS03825 0.89 -1.3
897,100 + LRK53_RS03825 0.89 +0.3
897,100 + LRK53_RS03825 0.89 -0.6
897,100 + LRK53_RS03825 0.89 -0.7
897,100 + LRK53_RS03825 0.89 -3.9
897,101 - LRK53_RS03825 0.89 +0.4
897,101 - LRK53_RS03825 0.89 -1.2
897,101 - LRK53_RS03825 0.89 -0.6
897,101 - LRK53_RS03825 0.89 -0.2
897,101 - LRK53_RS03825 0.89 -2.2
897,101 - LRK53_RS03825 0.89 +0.5
897,101 - LRK53_RS03825 0.89 -1.7

Or see this region's nucleotide sequence