Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00810 and LRK53_RS00815 are separated by 425 nucleotides LRK53_RS00815 and LRK53_RS00820 are separated by 106 nucleotides
LRK53_RS00810: LRK53_RS00810 - sugar MFS transporter, at 189,662 to 190,948
_RS00810
LRK53_RS00815: LRK53_RS00815 - glucokinase, at 191,374 to 192,459
_RS00815
LRK53_RS00820: LRK53_RS00820 - TonB-dependent receptor, at 192,566 to 195,283
_RS00820
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 190.557 kb on + strand, within LRK53_RS00810 at 190.557 kb on + strand, within LRK53_RS00810 at 190.557 kb on + strand, within LRK53_RS00810 at 190.557 kb on + strand, within LRK53_RS00810 at 190.758 kb on + strand, within LRK53_RS00810 at 190.758 kb on + strand, within LRK53_RS00810 at 190.759 kb on - strand, within LRK53_RS00810 at 190.759 kb on - strand, within LRK53_RS00810 at 190.759 kb on - strand, within LRK53_RS00810 at 190.759 kb on - strand, within LRK53_RS00810 at 190.767 kb on + strand, within LRK53_RS00810 at 190.767 kb on + strand, within LRK53_RS00810 at 190.768 kb on - strand, within LRK53_RS00810 at 190.768 kb on - strand, within LRK53_RS00810 at 190.768 kb on - strand, within LRK53_RS00810 at 190.768 kb on - strand, within LRK53_RS00810 at 190.768 kb on - strand, within LRK53_RS00810 at 190.768 kb on - strand, within LRK53_RS00810 at 191.015 kb on + strand at 191.016 kb on - strand at 191.016 kb on - strand at 191.016 kb on - strand at 191.043 kb on + strand at 191.044 kb on - strand at 191.044 kb on - strand at 191.169 kb on + strand at 191.181 kb on + strand at 191.181 kb on + strand at 191.181 kb on + strand at 191.181 kb on + strand at 191.223 kb on + strand at 191.223 kb on + strand at 191.224 kb on - strand at 191.225 kb on + strand at 191.226 kb on - strand at 191.318 kb on + strand at 191.361 kb on - strand at 191.557 kb on + strand, within LRK53_RS00815 at 191.557 kb on + strand, within LRK53_RS00815 at 191.557 kb on + strand, within LRK53_RS00815 at 191.557 kb on + strand, within LRK53_RS00815 at 191.558 kb on - strand, within LRK53_RS00815 at 191.566 kb on + strand, within LRK53_RS00815 at 191.566 kb on + strand, within LRK53_RS00815 at 191.690 kb on - strand, within LRK53_RS00815 at 191.690 kb on - strand, within LRK53_RS00815 at 191.777 kb on + strand, within LRK53_RS00815 at 191.777 kb on + strand, within LRK53_RS00815 at 191.778 kb on - strand, within LRK53_RS00815 at 191.778 kb on - strand, within LRK53_RS00815 at 192.092 kb on - strand, within LRK53_RS00815 at 192.250 kb on + strand, within LRK53_RS00815 at 192.250 kb on + strand, within LRK53_RS00815 at 192.250 kb on + strand, within LRK53_RS00815 at 192.250 kb on + strand, within LRK53_RS00815 at 192.251 kb on - strand, within LRK53_RS00815 at 192.271 kb on + strand, within LRK53_RS00815 at 192.271 kb on + strand, within LRK53_RS00815 at 192.271 kb on + strand, within LRK53_RS00815 at 192.271 kb on + strand, within LRK53_RS00815 at 192.271 kb on + strand, within LRK53_RS00815 at 192.272 kb on - strand, within LRK53_RS00815 at 192.337 kb on + strand, within LRK53_RS00815 at 192.337 kb on + strand, within LRK53_RS00815 at 192.337 kb on + strand, within LRK53_RS00815 at 192.337 kb on + strand, within LRK53_RS00815 at 192.338 kb on - strand, within LRK53_RS00815 at 192.338 kb on - strand, within LRK53_RS00815 at 192.338 kb on - strand, within LRK53_RS00815 at 192.364 kb on + strand at 192.365 kb on - strand at 192.383 kb on + strand at 192.383 kb on + strand at 192.572 kb on + strand at 192.573 kb on - strand at 192.573 kb on - strand at 192.573 kb on - strand at 192.632 kb on + strand at 192.632 kb on + strand at 192.632 kb on + strand at 192.632 kb on + strand at 192.633 kb on - strand at 193.031 kb on + strand, within LRK53_RS00820 at 193.031 kb on + strand, within LRK53_RS00820 at 193.031 kb on + strand, within LRK53_RS00820 at 193.031 kb on + strand, within LRK53_RS00820 at 193.031 kb on + strand, within LRK53_RS00820 at 193.031 kb on + strand, within LRK53_RS00820 at 193.032 kb on - strand, within LRK53_RS00820 at 193.032 kb on - strand, within LRK53_RS00820 at 193.032 kb on - strand, within LRK53_RS00820 at 193.032 kb on - strand, within LRK53_RS00820 at 193.032 kb on - strand, within LRK53_RS00820 at 193.032 kb on - strand, within LRK53_RS00820 at 193.032 kb on - strand, within LRK53_RS00820 at 193.032 kb on - strand, within LRK53_RS00820 at 193.193 kb on + strand, within LRK53_RS00820 at 193.193 kb on + strand, within LRK53_RS00820 at 193.194 kb on - strand, within LRK53_RS00820 at 193.194 kb on - strand, within LRK53_RS00820 at 193.194 kb on - strand, within LRK53_RS00820 at 193.337 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.370 kb on + strand, within LRK53_RS00820 at 193.371 kb on - strand, within LRK53_RS00820 at 193.371 kb on - strand, within LRK53_RS00820 at 193.371 kb on - strand, within LRK53_RS00820 at 193.371 kb on - strand, within LRK53_RS00820 at 193.371 kb on - strand, within LRK53_RS00820 at 193.374 kb on - strand, within LRK53_RS00820
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 190,557 + LRK53_RS00810 0.70 -0.4 190,557 + LRK53_RS00810 0.70 -1.2 190,557 + LRK53_RS00810 0.70 -0.8 190,557 + LRK53_RS00810 0.70 +0.8 190,758 + LRK53_RS00810 0.85 -2.8 190,758 + LRK53_RS00810 0.85 -0.0 190,759 - LRK53_RS00810 0.85 -0.6 190,759 - LRK53_RS00810 0.85 -0.0 190,759 - LRK53_RS00810 0.85 -1.8 190,759 - LRK53_RS00810 0.85 -0.1 190,767 + LRK53_RS00810 0.86 -0.4 190,767 + LRK53_RS00810 0.86 -0.0 190,768 - LRK53_RS00810 0.86 -0.3 190,768 - LRK53_RS00810 0.86 +0.6 190,768 - LRK53_RS00810 0.86 -0.3 190,768 - LRK53_RS00810 0.86 +0.2 190,768 - LRK53_RS00810 0.86 +2.0 190,768 - LRK53_RS00810 0.86 +1.1 191,015 + -1.2 191,016 - -1.0 191,016 - -1.2 191,016 - +0.1 191,043 + +2.8 191,044 - -2.2 191,044 - +0.1 191,169 + -0.5 191,181 + -0.0 191,181 + -0.3 191,181 + -0.5 191,181 + -2.8 191,223 + +1.2 191,223 + -1.0 191,224 - -0.5 191,225 + +0.6 191,226 - +0.4 191,318 + -1.2 191,361 - +0.1 191,557 + LRK53_RS00815 0.17 -1.6 191,557 + LRK53_RS00815 0.17 +0.7 191,557 + LRK53_RS00815 0.17 +0.3 191,557 + LRK53_RS00815 0.17 -2.1 191,558 - LRK53_RS00815 0.17 -1.9 191,566 + LRK53_RS00815 0.18 -1.8 191,566 + LRK53_RS00815 0.18 -1.2 191,690 - LRK53_RS00815 0.29 -1.6 191,690 - LRK53_RS00815 0.29 -0.3 191,777 + LRK53_RS00815 0.37 +0.4 191,777 + LRK53_RS00815 0.37 -1.8 191,778 - LRK53_RS00815 0.37 -0.5 191,778 - LRK53_RS00815 0.37 -0.4 192,092 - LRK53_RS00815 0.66 -0.9 192,250 + LRK53_RS00815 0.81 -1.6 192,250 + LRK53_RS00815 0.81 +0.8 192,250 + LRK53_RS00815 0.81 -0.3 192,250 + LRK53_RS00815 0.81 -1.3 192,251 - LRK53_RS00815 0.81 -0.2 192,271 + LRK53_RS00815 0.83 -0.9 192,271 + LRK53_RS00815 0.83 +0.4 192,271 + LRK53_RS00815 0.83 -0.7 192,271 + LRK53_RS00815 0.83 -1.6 192,271 + LRK53_RS00815 0.83 -1.4 192,272 - LRK53_RS00815 0.83 -0.2 192,337 + LRK53_RS00815 0.89 -0.2 192,337 + LRK53_RS00815 0.89 -1.7 192,337 + LRK53_RS00815 0.89 -0.8 192,337 + LRK53_RS00815 0.89 -0.2 192,338 - LRK53_RS00815 0.89 -0.4 192,338 - LRK53_RS00815 0.89 +0.8 192,338 - LRK53_RS00815 0.89 +0.2 192,364 + +0.6 192,365 - -1.7 192,383 + -0.4 192,383 + -0.3 192,572 + -1.4 192,573 - -1.2 192,573 - -1.8 192,573 - -0.6 192,632 + -3.3 192,632 + -2.2 192,632 + +0.6 192,632 + +0.6 192,633 - +0.6 193,031 + LRK53_RS00820 0.17 -0.0 193,031 + LRK53_RS00820 0.17 -1.2 193,031 + LRK53_RS00820 0.17 -1.8 193,031 + LRK53_RS00820 0.17 -0.5 193,031 + LRK53_RS00820 0.17 -1.6 193,031 + LRK53_RS00820 0.17 -1.7 193,032 - LRK53_RS00820 0.17 -0.2 193,032 - LRK53_RS00820 0.17 -0.9 193,032 - LRK53_RS00820 0.17 -1.0 193,032 - LRK53_RS00820 0.17 -1.2 193,032 - LRK53_RS00820 0.17 -1.5 193,032 - LRK53_RS00820 0.17 -2.1 193,032 - LRK53_RS00820 0.17 -1.2 193,032 - LRK53_RS00820 0.17 -1.8 193,193 + LRK53_RS00820 0.23 -0.2 193,193 + LRK53_RS00820 0.23 +0.5 193,194 - LRK53_RS00820 0.23 -1.3 193,194 - LRK53_RS00820 0.23 +0.9 193,194 - LRK53_RS00820 0.23 -0.4 193,337 + LRK53_RS00820 0.28 +1.7 193,370 + LRK53_RS00820 0.30 +0.8 193,370 + LRK53_RS00820 0.30 -1.0 193,370 + LRK53_RS00820 0.30 -0.5 193,370 + LRK53_RS00820 0.30 +1.1 193,370 + LRK53_RS00820 0.30 -1.1 193,370 + LRK53_RS00820 0.30 -0.1 193,370 + LRK53_RS00820 0.30 +3.2 193,370 + LRK53_RS00820 0.30 -0.0 193,370 + LRK53_RS00820 0.30 -1.6 193,370 + LRK53_RS00820 0.30 -0.8 193,370 + LRK53_RS00820 0.30 -1.8 193,371 - LRK53_RS00820 0.30 -0.6 193,371 - LRK53_RS00820 0.30 -3.2 193,371 - LRK53_RS00820 0.30 -1.2 193,371 - LRK53_RS00820 0.30 +1.4 193,371 - LRK53_RS00820 0.30 -0.7 193,374 - LRK53_RS00820 0.30 -0.2
Or see this region's nucleotide sequence