Experiment: LB_noSalt with Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42335 and QEN71_RS42340 are separated by 205 nucleotides QEN71_RS42340 and QEN71_RS42345 are separated by 407 nucleotides QEN71_RS42345 and QEN71_RS42350 are separated by 715 nucleotides
QEN71_RS42335: QEN71_RS42335 - IS5 family transposase, at 547,010 to 548,463
_RS42335
QEN71_RS42340: QEN71_RS42340 - tyrosine-type recombinase/integrase, at 548,669 to 549,010
_RS42340
QEN71_RS42345: QEN71_RS42345 - hypothetical protein, at 549,418 to 549,617
_RS42345
QEN71_RS42350: QEN71_RS42350 - site-specific integrase, at 550,333 to 551,199
_RS42350
Position (kb) 549
550 Strain fitness (log2 ratio) -1
0
1 at 548.481 kb on - strand at 548.670 kb on + strand at 548.723 kb on - strand, within QEN71_RS42340 at 548.723 kb on - strand, within QEN71_RS42340 at 548.723 kb on - strand, within QEN71_RS42340 at 549.012 kb on + strand at 549.012 kb on + strand at 549.493 kb on - strand, within QEN71_RS42345 at 549.828 kb on - strand at 549.889 kb on - strand at 549.951 kb on + strand at 549.955 kb on - strand at 550.045 kb on - strand at 550.372 kb on - strand at 550.372 kb on - strand at 550.385 kb on - strand at 550.415 kb on - strand at 550.460 kb on + strand, within QEN71_RS42350 at 550.483 kb on + strand, within QEN71_RS42350
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM remove 548,481 - -0.4 548,670 + +0.7 548,723 - QEN71_RS42340 0.16 -0.8 548,723 - QEN71_RS42340 0.16 +0.4 548,723 - QEN71_RS42340 0.16 +0.8 549,012 + -0.8 549,012 + -0.2 549,493 - QEN71_RS42345 0.38 -1.6 549,828 - -0.2 549,889 - -0.0 549,951 + -0.6 549,955 - +0.2 550,045 - +0.5 550,372 - +0.8 550,372 - +0.4 550,385 - -0.4 550,415 - +0.8 550,460 + QEN71_RS42350 0.15 -0.4 550,483 + QEN71_RS42350 0.17 -0.2
Or see this region's nucleotide sequence