Experiment: LB_noSalt with Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS40475 and QEN71_RS40480 are separated by 40 nucleotides QEN71_RS40480 and QEN71_RS40485 are separated by 157 nucleotides QEN71_RS40485 and QEN71_RS40490 are separated by 154 nucleotides
QEN71_RS40475: QEN71_RS40475 - IS256 family transposase, at 153,766 to 154,108
_RS40475
QEN71_RS40480: QEN71_RS40480 - IS110 family transposase, at 154,149 to 154,408
_RS40480
QEN71_RS40485: QEN71_RS40485 - transposase, at 154,566 to 155,103
_RS40485
QEN71_RS40490: QEN71_RS40490 - IS110 family transposase, at 155,258 to 156,289
_RS40490
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1 at 153.597 kb on + strand at 153.598 kb on - strand at 153.957 kb on + strand, within QEN71_RS40475 at 153.958 kb on - strand, within QEN71_RS40475 at 153.958 kb on - strand, within QEN71_RS40475 at 154.144 kb on - strand at 154.180 kb on - strand, within QEN71_RS40480 at 154.344 kb on + strand, within QEN71_RS40480 at 154.344 kb on + strand, within QEN71_RS40480 at 154.853 kb on - strand, within QEN71_RS40485 at 155.056 kb on + strand at 155.056 kb on + strand at 155.056 kb on + strand at 155.057 kb on - strand at 155.057 kb on - strand at 155.057 kb on - strand at 155.057 kb on - strand at 155.065 kb on + strand at 155.065 kb on + strand at 155.382 kb on - strand, within QEN71_RS40490 at 155.659 kb on + strand, within QEN71_RS40490 at 155.671 kb on - strand, within QEN71_RS40490 at 155.671 kb on - strand, within QEN71_RS40490 at 155.693 kb on - strand, within QEN71_RS40490 at 156.054 kb on + strand, within QEN71_RS40490 at 156.081 kb on - strand, within QEN71_RS40490 at 156.096 kb on + strand, within QEN71_RS40490
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM remove 153,597 + -2.6 153,598 - -0.4 153,957 + QEN71_RS40475 0.56 -1.7 153,958 - QEN71_RS40475 0.56 -0.7 153,958 - QEN71_RS40475 0.56 +0.2 154,144 - -0.0 154,180 - QEN71_RS40480 0.12 -0.2 154,344 + QEN71_RS40480 0.75 -0.2 154,344 + QEN71_RS40480 0.75 -0.1 154,853 - QEN71_RS40485 0.53 -1.7 155,056 + -1.7 155,056 + +0.3 155,056 + -0.4 155,057 - -2.0 155,057 - +0.3 155,057 - -0.8 155,057 - -0.2 155,065 + +0.6 155,065 + +0.2 155,382 - QEN71_RS40490 0.12 -0.5 155,659 + QEN71_RS40490 0.39 -1.9 155,671 - QEN71_RS40490 0.40 -0.7 155,671 - QEN71_RS40490 0.40 -0.1 155,693 - QEN71_RS40490 0.42 +0.4 156,054 + QEN71_RS40490 0.77 +0.1 156,081 - QEN71_RS40490 0.80 -0.2 156,096 + QEN71_RS40490 0.81 -0.6
Or see this region's nucleotide sequence