Experiment: LB_noSalt with Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS40310 and QEN71_RS40315 are separated by 31 nucleotides QEN71_RS40315 and QEN71_RS40320 are separated by 185 nucleotides QEN71_RS40320 and QEN71_RS40325 are separated by 681 nucleotides
QEN71_RS40310: QEN71_RS40310 - hypothetical protein, at 126,956 to 127,258
_RS40310
QEN71_RS40315: QEN71_RS40315 - hypothetical protein, at 127,290 to 127,574
_RS40315
QEN71_RS40320: QEN71_RS40320 - GntR family transcriptional regulator, at 127,760 to 128,521
_RS40320
QEN71_RS40325: QEN71_RS40325 - ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB, at 129,203 to 130,045
_RS40325
Position (kb) 127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 126.812 kb on - strand at 126.812 kb on - strand at 126.812 kb on - strand at 126.862 kb on + strand at 126.863 kb on - strand at 126.863 kb on - strand at 126.899 kb on - strand at 127.119 kb on - strand, within QEN71_RS40310 at 127.155 kb on + strand, within QEN71_RS40310 at 127.156 kb on - strand, within QEN71_RS40310 at 127.156 kb on - strand, within QEN71_RS40310 at 127.192 kb on + strand, within QEN71_RS40310 at 127.192 kb on + strand, within QEN71_RS40310 at 127.369 kb on - strand, within QEN71_RS40315 at 127.376 kb on + strand, within QEN71_RS40315 at 127.439 kb on + strand, within QEN71_RS40315 at 127.439 kb on + strand, within QEN71_RS40315 at 127.440 kb on - strand, within QEN71_RS40315 at 127.440 kb on - strand, within QEN71_RS40315 at 127.440 kb on - strand, within QEN71_RS40315 at 127.578 kb on + strand at 127.578 kb on + strand at 127.578 kb on + strand at 127.579 kb on - strand at 127.579 kb on - strand at 127.579 kb on - strand at 127.579 kb on - strand at 127.579 kb on - strand at 127.600 kb on + strand at 127.600 kb on + strand at 127.600 kb on + strand at 127.628 kb on + strand at 127.745 kb on + strand at 127.745 kb on + strand at 127.745 kb on + strand at 127.746 kb on - strand at 127.746 kb on - strand at 127.746 kb on - strand at 127.746 kb on - strand at 127.761 kb on + strand at 127.762 kb on - strand at 127.762 kb on - strand at 127.762 kb on - strand at 127.762 kb on - strand at 127.964 kb on + strand, within QEN71_RS40320 at 127.964 kb on + strand, within QEN71_RS40320 at 127.964 kb on + strand, within QEN71_RS40320 at 127.965 kb on - strand, within QEN71_RS40320 at 127.970 kb on - strand, within QEN71_RS40320 at 127.970 kb on - strand, within QEN71_RS40320 at 127.970 kb on - strand, within QEN71_RS40320 at 127.972 kb on + strand, within QEN71_RS40320 at 127.972 kb on + strand, within QEN71_RS40320 at 127.973 kb on - strand, within QEN71_RS40320 at 127.973 kb on - strand, within QEN71_RS40320 at 127.973 kb on - strand, within QEN71_RS40320 at 127.978 kb on + strand, within QEN71_RS40320 at 127.978 kb on + strand, within QEN71_RS40320 at 127.978 kb on + strand, within QEN71_RS40320 at 127.979 kb on - strand, within QEN71_RS40320 at 127.979 kb on - strand, within QEN71_RS40320 at 127.979 kb on - strand, within QEN71_RS40320 at 127.996 kb on + strand, within QEN71_RS40320 at 127.997 kb on - strand, within QEN71_RS40320 at 127.997 kb on - strand, within QEN71_RS40320 at 128.022 kb on + strand, within QEN71_RS40320 at 128.022 kb on + strand, within QEN71_RS40320 at 128.022 kb on + strand, within QEN71_RS40320 at 128.059 kb on + strand, within QEN71_RS40320 at 128.059 kb on + strand, within QEN71_RS40320 at 128.065 kb on + strand, within QEN71_RS40320 at 128.073 kb on + strand, within QEN71_RS40320 at 128.073 kb on + strand, within QEN71_RS40320 at 128.074 kb on - strand, within QEN71_RS40320 at 128.074 kb on - strand, within QEN71_RS40320 at 128.074 kb on - strand, within QEN71_RS40320 at 128.085 kb on + strand, within QEN71_RS40320 at 128.086 kb on - strand, within QEN71_RS40320 at 128.093 kb on - strand, within QEN71_RS40320 at 128.110 kb on - strand, within QEN71_RS40320 at 128.110 kb on - strand, within QEN71_RS40320 at 128.110 kb on - strand, within QEN71_RS40320 at 128.110 kb on - strand, within QEN71_RS40320 at 128.157 kb on - strand, within QEN71_RS40320 at 128.157 kb on - strand, within QEN71_RS40320 at 128.157 kb on - strand, within QEN71_RS40320 at 128.177 kb on - strand, within QEN71_RS40320 at 128.199 kb on - strand, within QEN71_RS40320 at 128.254 kb on + strand, within QEN71_RS40320 at 128.254 kb on + strand, within QEN71_RS40320 at 128.254 kb on + strand, within QEN71_RS40320 at 128.254 kb on + strand, within QEN71_RS40320 at 128.255 kb on - strand, within QEN71_RS40320 at 128.255 kb on - strand, within QEN71_RS40320 at 128.255 kb on - strand, within QEN71_RS40320 at 128.255 kb on - strand, within QEN71_RS40320 at 128.255 kb on - strand, within QEN71_RS40320 at 128.255 kb on - strand, within QEN71_RS40320 at 128.258 kb on + strand, within QEN71_RS40320 at 128.258 kb on + strand, within QEN71_RS40320 at 128.258 kb on + strand, within QEN71_RS40320 at 128.258 kb on + strand, within QEN71_RS40320 at 128.258 kb on + strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.259 kb on - strand, within QEN71_RS40320 at 128.328 kb on - strand, within QEN71_RS40320 at 128.364 kb on - strand, within QEN71_RS40320 at 128.369 kb on - strand, within QEN71_RS40320 at 128.369 kb on - strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.433 kb on + strand, within QEN71_RS40320 at 128.434 kb on - strand, within QEN71_RS40320 at 128.436 kb on - strand, within QEN71_RS40320 at 128.523 kb on + strand at 128.523 kb on + strand at 128.523 kb on + strand at 128.523 kb on + strand at 128.523 kb on + strand at 128.523 kb on + strand at 128.524 kb on - strand at 128.524 kb on - strand at 128.534 kb on + strand at 128.610 kb on - strand at 128.610 kb on - strand at 128.610 kb on - strand at 128.610 kb on - strand at 128.611 kb on + strand at 128.611 kb on + strand at 128.611 kb on + strand at 128.614 kb on + strand at 128.615 kb on - strand at 128.615 kb on - strand at 128.615 kb on - strand at 128.615 kb on - strand at 128.615 kb on - strand at 128.622 kb on + strand at 128.622 kb on + strand at 128.622 kb on + strand at 128.623 kb on - strand at 128.623 kb on - strand at 128.623 kb on - strand at 128.623 kb on - strand at 128.626 kb on + strand at 128.626 kb on + strand at 128.627 kb on - strand at 128.627 kb on - strand at 128.636 kb on - strand at 128.763 kb on + strand at 128.763 kb on + strand at 128.763 kb on + strand at 128.763 kb on + strand at 128.763 kb on + strand at 128.764 kb on - strand at 128.764 kb on - strand at 128.764 kb on - strand at 128.833 kb on + strand at 128.833 kb on + strand at 128.833 kb on + strand at 128.833 kb on + strand at 128.833 kb on + strand at 128.834 kb on - strand at 128.879 kb on + strand at 128.879 kb on + strand at 128.879 kb on + strand at 128.879 kb on + strand at 128.880 kb on - strand at 128.880 kb on - strand at 128.954 kb on + strand at 128.954 kb on + strand at 128.954 kb on + strand at 128.958 kb on - strand at 128.979 kb on + strand at 128.980 kb on - strand at 128.995 kb on + strand at 128.996 kb on - strand at 129.012 kb on + strand at 129.029 kb on - strand at 129.072 kb on + strand at 129.072 kb on + strand at 129.072 kb on + strand at 129.072 kb on + strand at 129.072 kb on + strand at 129.072 kb on + strand at 129.073 kb on - strand at 129.073 kb on - strand at 129.073 kb on - strand at 129.073 kb on - strand at 129.073 kb on - strand at 129.073 kb on - strand at 129.089 kb on + strand at 129.089 kb on + strand at 129.089 kb on + strand at 129.092 kb on + strand at 129.092 kb on + strand at 129.093 kb on - strand at 129.093 kb on - strand at 129.100 kb on - strand at 129.100 kb on - strand at 129.151 kb on - strand at 129.159 kb on - strand at 129.159 kb on - strand at 129.159 kb on - strand at 129.159 kb on - strand at 129.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM remove 126,812 - -0.2 126,812 - -1.2 126,812 - -0.4 126,862 + +1.4 126,863 - +0.2 126,863 - -0.3 126,899 - -1.2 127,119 - QEN71_RS40310 0.54 +0.2 127,155 + QEN71_RS40310 0.66 -0.7 127,156 - QEN71_RS40310 0.66 +0.8 127,156 - QEN71_RS40310 0.66 -0.6 127,192 + QEN71_RS40310 0.78 -1.0 127,192 + QEN71_RS40310 0.78 +0.3 127,369 - QEN71_RS40315 0.28 -1.2 127,376 + QEN71_RS40315 0.30 -1.5 127,439 + QEN71_RS40315 0.52 -0.0 127,439 + QEN71_RS40315 0.52 -0.6 127,440 - QEN71_RS40315 0.53 -0.3 127,440 - QEN71_RS40315 0.53 +0.3 127,440 - QEN71_RS40315 0.53 +0.1 127,578 + -0.3 127,578 + -1.4 127,578 + +1.5 127,579 - +0.9 127,579 - +0.6 127,579 - +0.7 127,579 - -1.0 127,579 - -0.6 127,600 + -0.1 127,600 + -1.0 127,600 + -1.4 127,628 + -0.1 127,745 + +0.4 127,745 + -0.5 127,745 + +0.2 127,746 - -0.2 127,746 - +1.0 127,746 - +0.8 127,746 - -1.8 127,761 + -0.5 127,762 - +0.1 127,762 - -0.7 127,762 - -0.1 127,762 - -0.4 127,964 + QEN71_RS40320 0.27 -0.6 127,964 + QEN71_RS40320 0.27 +0.2 127,964 + QEN71_RS40320 0.27 -1.6 127,965 - QEN71_RS40320 0.27 -0.6 127,970 - QEN71_RS40320 0.28 -0.6 127,970 - QEN71_RS40320 0.28 -0.8 127,970 - QEN71_RS40320 0.28 -3.1 127,972 + QEN71_RS40320 0.28 -0.5 127,972 + QEN71_RS40320 0.28 -2.6 127,973 - QEN71_RS40320 0.28 -1.5 127,973 - QEN71_RS40320 0.28 -2.1 127,973 - QEN71_RS40320 0.28 -1.1 127,978 + QEN71_RS40320 0.29 -0.6 127,978 + QEN71_RS40320 0.29 -2.0 127,978 + QEN71_RS40320 0.29 -0.8 127,979 - QEN71_RS40320 0.29 -2.9 127,979 - QEN71_RS40320 0.29 -0.3 127,979 - QEN71_RS40320 0.29 -0.7 127,996 + QEN71_RS40320 0.31 -0.5 127,997 - QEN71_RS40320 0.31 +0.6 127,997 - QEN71_RS40320 0.31 -0.8 128,022 + QEN71_RS40320 0.34 -1.3 128,022 + QEN71_RS40320 0.34 -1.8 128,022 + QEN71_RS40320 0.34 -0.2 128,059 + QEN71_RS40320 0.39 -1.4 128,059 + QEN71_RS40320 0.39 -2.2 128,065 + QEN71_RS40320 0.40 -0.2 128,073 + QEN71_RS40320 0.41 -0.2 128,073 + QEN71_RS40320 0.41 -2.8 128,074 - QEN71_RS40320 0.41 -1.0 128,074 - QEN71_RS40320 0.41 -0.2 128,074 - QEN71_RS40320 0.41 -2.4 128,085 + QEN71_RS40320 0.43 -1.6 128,086 - QEN71_RS40320 0.43 +1.7 128,093 - QEN71_RS40320 0.44 -1.6 128,110 - QEN71_RS40320 0.46 -0.2 128,110 - QEN71_RS40320 0.46 -1.5 128,110 - QEN71_RS40320 0.46 +0.2 128,110 - QEN71_RS40320 0.46 -1.2 128,157 - QEN71_RS40320 0.52 +0.8 128,157 - QEN71_RS40320 0.52 -0.2 128,157 - QEN71_RS40320 0.52 -1.0 128,177 - QEN71_RS40320 0.55 -2.7 128,199 - QEN71_RS40320 0.58 -2.9 128,254 + QEN71_RS40320 0.65 -0.4 128,254 + QEN71_RS40320 0.65 +0.2 128,254 + QEN71_RS40320 0.65 -1.9 128,254 + QEN71_RS40320 0.65 -0.6 128,255 - QEN71_RS40320 0.65 -1.4 128,255 - QEN71_RS40320 0.65 -3.4 128,255 - QEN71_RS40320 0.65 -0.4 128,255 - QEN71_RS40320 0.65 -3.0 128,255 - QEN71_RS40320 0.65 -1.6 128,255 - QEN71_RS40320 0.65 -1.3 128,258 + QEN71_RS40320 0.65 -1.7 128,258 + QEN71_RS40320 0.65 -0.4 128,258 + QEN71_RS40320 0.65 -2.9 128,258 + QEN71_RS40320 0.65 -1.0 128,258 + QEN71_RS40320 0.65 -0.6 128,259 - QEN71_RS40320 0.65 -0.2 128,259 - QEN71_RS40320 0.65 -1.5 128,259 - QEN71_RS40320 0.65 -1.3 128,259 - QEN71_RS40320 0.65 -2.0 128,259 - QEN71_RS40320 0.65 -3.1 128,259 - QEN71_RS40320 0.65 -0.6 128,259 - QEN71_RS40320 0.65 -0.5 128,259 - QEN71_RS40320 0.65 +0.2 128,259 - QEN71_RS40320 0.65 +0.2 128,259 - QEN71_RS40320 0.65 -1.2 128,259 - QEN71_RS40320 0.65 -1.4 128,328 - QEN71_RS40320 0.75 -2.3 128,364 - QEN71_RS40320 0.79 -0.8 128,369 - QEN71_RS40320 0.80 -1.4 128,369 - QEN71_RS40320 0.80 -1.9 128,433 + QEN71_RS40320 0.88 -1.8 128,433 + QEN71_RS40320 0.88 -0.8 128,433 + QEN71_RS40320 0.88 -0.4 128,433 + QEN71_RS40320 0.88 -2.0 128,433 + QEN71_RS40320 0.88 +1.4 128,433 + QEN71_RS40320 0.88 -1.0 128,433 + QEN71_RS40320 0.88 +0.2 128,433 + QEN71_RS40320 0.88 -2.9 128,433 + QEN71_RS40320 0.88 -2.1 128,434 - QEN71_RS40320 0.88 -2.8 128,436 - QEN71_RS40320 0.89 -2.6 128,523 + -1.2 128,523 + -1.0 128,523 + -1.8 128,523 + -0.8 128,523 + -1.6 128,523 + -0.7 128,524 - +1.3 128,524 - +0.2 128,534 + -1.3 128,610 - -0.1 128,610 - +0.3 128,610 - +0.5 128,610 - +0.3 128,611 + -1.2 128,611 + +0.2 128,611 + -0.2 128,614 + -0.6 128,615 - +0.6 128,615 - +0.7 128,615 - -1.4 128,615 - -0.4 128,615 - -0.1 128,622 + +0.5 128,622 + -0.6 128,622 + -1.0 128,623 - -0.2 128,623 - +2.2 128,623 - +1.1 128,623 - -0.3 128,626 + +0.3 128,626 + -0.6 128,627 - -1.5 128,627 - +0.6 128,636 - +0.6 128,763 + -0.6 128,763 + +0.2 128,763 + +1.2 128,763 + -0.3 128,763 + -0.6 128,764 - +1.4 128,764 - +0.0 128,764 - -0.3 128,833 + +0.2 128,833 + -1.1 128,833 + +1.2 128,833 + -0.2 128,833 + -0.2 128,834 - -0.0 128,879 + +1.1 128,879 + -1.9 128,879 + -0.1 128,879 + -0.7 128,880 - -0.6 128,880 - +0.2 128,954 + -0.8 128,954 + +0.8 128,954 + -0.2 128,958 - +0.7 128,979 + +0.7 128,980 - +0.7 128,995 + -0.5 128,996 - +0.5 129,012 + -0.8 129,029 - +0.0 129,072 + +0.4 129,072 + -0.2 129,072 + -0.5 129,072 + -1.8 129,072 + +0.5 129,072 + +0.7 129,073 - +1.3 129,073 - -2.0 129,073 - +1.0 129,073 - +0.7 129,073 - +0.7 129,073 - +0.2 129,089 + +0.3 129,089 + +0.8 129,089 + +0.8 129,092 + +0.2 129,092 + +0.1 129,093 - -2.0 129,093 - +0.3 129,100 - -1.5 129,100 - -1.7 129,151 - -0.4 129,159 - +0.6 129,159 - -1.2 129,159 - +0.8 129,159 - -1.3 129,284 - +1.2
Or see this region's nucleotide sequence