Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39335

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39330 and QEN71_RS39335 are separated by 16 nucleotidesQEN71_RS39335 and QEN71_RS39340 are separated by 20 nucleotides QEN71_RS39330: QEN71_RS39330 - flagellar hook protein FlgE, at 2,200,283 to 2,201,518 _RS39330 QEN71_RS39335: QEN71_RS39335 - hypothetical protein, at 2,201,535 to 2,202,161 _RS39335 QEN71_RS39340: QEN71_RS39340 - LysR family transcriptional regulator, at 2,202,182 to 2,203,219 _RS39340 Position (kb) 2201 2202 2203Strain fitness (log2 ratio) -2 -1 0 1at 2200.580 kb on + strand, within QEN71_RS39330at 2200.656 kb on - strand, within QEN71_RS39330at 2200.916 kb on + strand, within QEN71_RS39330at 2200.916 kb on + strand, within QEN71_RS39330at 2200.926 kb on - strand, within QEN71_RS39330at 2201.015 kb on - strand, within QEN71_RS39330at 2201.015 kb on - strand, within QEN71_RS39330at 2201.220 kb on - strand, within QEN71_RS39330at 2201.220 kb on - strand, within QEN71_RS39330at 2201.309 kb on + strand, within QEN71_RS39330at 2201.453 kb on + strandat 2201.454 kb on - strandat 2201.512 kb on + strandat 2201.800 kb on - strand, within QEN71_RS39335at 2201.917 kb on - strand, within QEN71_RS39335at 2202.089 kb on + strand, within QEN71_RS39335at 2202.144 kb on + strandat 2202.147 kb on + strandat 2202.147 kb on + strandat 2202.159 kb on + strandat 2202.324 kb on + strand, within QEN71_RS39340at 2202.411 kb on + strand, within QEN71_RS39340at 2203.091 kb on - strand, within QEN71_RS39340at 2203.091 kb on - strand, within QEN71_RS39340at 2203.091 kb on - strand, within QEN71_RS39340

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,200,580 + QEN71_RS39330 0.24 +0.0
2,200,656 - QEN71_RS39330 0.30 -2.1
2,200,916 + QEN71_RS39330 0.51 -0.8
2,200,916 + QEN71_RS39330 0.51 -0.7
2,200,926 - QEN71_RS39330 0.52 -0.4
2,201,015 - QEN71_RS39330 0.59 -1.4
2,201,015 - QEN71_RS39330 0.59 -1.2
2,201,220 - QEN71_RS39330 0.76 -2.6
2,201,220 - QEN71_RS39330 0.76 -0.6
2,201,309 + QEN71_RS39330 0.83 -0.3
2,201,453 + -0.1
2,201,454 - -0.9
2,201,512 + -0.8
2,201,800 - QEN71_RS39335 0.42 -0.1
2,201,917 - QEN71_RS39335 0.61 -2.5
2,202,089 + QEN71_RS39335 0.88 -1.0
2,202,144 + -0.6
2,202,147 + +1.2
2,202,147 + -1.2
2,202,159 + -0.4
2,202,324 + QEN71_RS39340 0.14 -2.7
2,202,411 + QEN71_RS39340 0.22 +0.6
2,203,091 - QEN71_RS39340 0.88 -0.6
2,203,091 - QEN71_RS39340 0.88 -0.4
2,203,091 - QEN71_RS39340 0.88 -0.4

Or see this region's nucleotide sequence