Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39085

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39080 and QEN71_RS39085 are separated by 732 nucleotidesQEN71_RS39085 and QEN71_RS39090 are separated by 150 nucleotidesQEN71_RS39090 and QEN71_RS39095 are separated by 117 nucleotides QEN71_RS39080: QEN71_RS39080 - TMEM175 family protein, at 2,149,791 to 2,150,450 _RS39080 QEN71_RS39085: QEN71_RS39085 - LysR family transcriptional regulator, at 2,151,183 to 2,152,145 _RS39085 QEN71_RS39090: QEN71_RS39090 - SDR family oxidoreductase, at 2,152,296 to 2,153,006 _RS39090 QEN71_RS39095: QEN71_RS39095 - aldolase, at 2,153,124 to 2,153,879 _RS39095 Position (kb) 2151 2152 2153Strain fitness (log2 ratio) -1 0 1 2at 2150.287 kb on + strand, within QEN71_RS39080at 2150.300 kb on - strand, within QEN71_RS39080at 2150.300 kb on - strand, within QEN71_RS39080at 2150.376 kb on + strand, within QEN71_RS39080at 2150.376 kb on + strand, within QEN71_RS39080at 2150.459 kb on - strandat 2150.501 kb on - strandat 2150.538 kb on + strandat 2150.637 kb on + strandat 2150.637 kb on + strandat 2150.820 kb on - strandat 2150.962 kb on + strandat 2151.158 kb on - strandat 2151.158 kb on - strandat 2151.189 kb on - strandat 2151.285 kb on + strand, within QEN71_RS39085at 2151.468 kb on + strand, within QEN71_RS39085at 2151.501 kb on + strand, within QEN71_RS39085at 2151.575 kb on - strand, within QEN71_RS39085at 2151.628 kb on - strand, within QEN71_RS39085at 2151.688 kb on - strand, within QEN71_RS39085at 2151.728 kb on + strand, within QEN71_RS39085at 2151.796 kb on + strand, within QEN71_RS39085at 2151.882 kb on - strand, within QEN71_RS39085at 2151.952 kb on + strand, within QEN71_RS39085at 2151.953 kb on - strand, within QEN71_RS39085at 2152.545 kb on + strand, within QEN71_RS39090at 2152.546 kb on - strand, within QEN71_RS39090at 2152.546 kb on - strand, within QEN71_RS39090at 2152.546 kb on - strand, within QEN71_RS39090at 2152.546 kb on - strand, within QEN71_RS39090at 2152.624 kb on - strand, within QEN71_RS39090at 2152.720 kb on + strand, within QEN71_RS39090at 2153.087 kb on + strandat 2153.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,150,287 + QEN71_RS39080 0.75 -0.7
2,150,300 - QEN71_RS39080 0.77 +0.6
2,150,300 - QEN71_RS39080 0.77 +1.1
2,150,376 + QEN71_RS39080 0.89 +0.6
2,150,376 + QEN71_RS39080 0.89 -0.5
2,150,459 - -0.4
2,150,501 - -0.6
2,150,538 + -0.1
2,150,637 + -0.8
2,150,637 + +1.1
2,150,820 - +2.2
2,150,962 + -0.6
2,151,158 - +1.5
2,151,158 - +0.2
2,151,189 - +0.5
2,151,285 + QEN71_RS39085 0.11 -0.6
2,151,468 + QEN71_RS39085 0.30 -1.0
2,151,501 + QEN71_RS39085 0.33 +0.4
2,151,575 - QEN71_RS39085 0.41 -0.8
2,151,628 - QEN71_RS39085 0.46 -0.1
2,151,688 - QEN71_RS39085 0.52 +0.2
2,151,728 + QEN71_RS39085 0.57 +0.2
2,151,796 + QEN71_RS39085 0.64 +0.4
2,151,882 - QEN71_RS39085 0.73 -0.1
2,151,952 + QEN71_RS39085 0.80 -0.5
2,151,953 - QEN71_RS39085 0.80 -0.2
2,152,545 + QEN71_RS39090 0.35 -0.9
2,152,546 - QEN71_RS39090 0.35 -0.0
2,152,546 - QEN71_RS39090 0.35 -0.8
2,152,546 - QEN71_RS39090 0.35 +0.2
2,152,546 - QEN71_RS39090 0.35 +0.2
2,152,624 - QEN71_RS39090 0.46 +0.2
2,152,720 + QEN71_RS39090 0.60 -1.0
2,153,087 + -1.1
2,153,088 - -0.3

Or see this region's nucleotide sequence