Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38940

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38935 and QEN71_RS38940 are separated by 113 nucleotidesQEN71_RS38940 and QEN71_RS38945 are separated by 38 nucleotidesQEN71_RS38945 and QEN71_RS38950 are separated by 41 nucleotides QEN71_RS38935: QEN71_RS38935 - LysR family transcriptional regulator, at 2,112,439 to 2,113,341 _RS38935 QEN71_RS38940: QEN71_RS38940 - MFS transporter, at 2,113,455 to 2,114,660 _RS38940 QEN71_RS38945: QEN71_RS38945 - 2,5-didehydrogluconate reductase DkgB, at 2,114,699 to 2,115,505 _RS38945 QEN71_RS38950: QEN71_RS38950 - alkene reductase, at 2,115,547 to 2,116,665 _RS38950 Position (kb) 2113 2114 2115Strain fitness (log2 ratio) -2 -1 0 1 2at 2112.480 kb on - strandat 2112.528 kb on - strandat 2112.528 kb on - strandat 2113.342 kb on - strandat 2113.374 kb on - strandat 2113.582 kb on + strand, within QEN71_RS38940at 2113.583 kb on - strand, within QEN71_RS38940at 2113.583 kb on - strand, within QEN71_RS38940at 2113.593 kb on + strand, within QEN71_RS38940at 2113.593 kb on + strand, within QEN71_RS38940at 2113.594 kb on - strand, within QEN71_RS38940at 2113.726 kb on - strand, within QEN71_RS38940at 2114.071 kb on - strand, within QEN71_RS38940at 2114.395 kb on - strand, within QEN71_RS38940at 2114.395 kb on - strand, within QEN71_RS38940at 2114.659 kb on - strandat 2114.909 kb on + strand, within QEN71_RS38945at 2114.909 kb on + strand, within QEN71_RS38945at 2114.910 kb on - strand, within QEN71_RS38945at 2114.910 kb on - strand, within QEN71_RS38945at 2115.233 kb on + strand, within QEN71_RS38945at 2115.233 kb on + strand, within QEN71_RS38945at 2115.234 kb on - strand, within QEN71_RS38945

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,112,480 - -0.6
2,112,528 - +0.2
2,112,528 - +0.3
2,113,342 - +0.1
2,113,374 - -1.3
2,113,582 + QEN71_RS38940 0.11 -2.2
2,113,583 - QEN71_RS38940 0.11 -1.3
2,113,583 - QEN71_RS38940 0.11 -2.3
2,113,593 + QEN71_RS38940 0.11 -0.6
2,113,593 + QEN71_RS38940 0.11 -0.3
2,113,594 - QEN71_RS38940 0.12 +0.2
2,113,726 - QEN71_RS38940 0.22 -1.3
2,114,071 - QEN71_RS38940 0.51 +2.2
2,114,395 - QEN71_RS38940 0.78 -1.1
2,114,395 - QEN71_RS38940 0.78 -1.4
2,114,659 - +0.2
2,114,909 + QEN71_RS38945 0.26 -0.6
2,114,909 + QEN71_RS38945 0.26 +0.0
2,114,910 - QEN71_RS38945 0.26 +0.6
2,114,910 - QEN71_RS38945 0.26 -0.4
2,115,233 + QEN71_RS38945 0.66 +0.1
2,115,233 + QEN71_RS38945 0.66 +0.2
2,115,234 - QEN71_RS38945 0.66 -1.3

Or see this region's nucleotide sequence