Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38645

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38635 and QEN71_RS38640 are separated by 147 nucleotidesQEN71_RS38640 and QEN71_RS38645 are separated by 9 nucleotidesQEN71_RS38645 and QEN71_RS38650 are separated by 119 nucleotides QEN71_RS38635: QEN71_RS38635 - methyl-accepting chemotaxis protein, at 2,049,510 to 2,051,213 _RS38635 QEN71_RS38640: QEN71_RS38640 - GFA family protein, at 2,051,361 to 2,051,708 _RS38640 QEN71_RS38645: QEN71_RS38645 - MerR family transcriptional regulator, at 2,051,718 to 2,052,737 _RS38645 QEN71_RS38650: QEN71_RS38650 - epoxide hydrolase, at 2,052,857 to 2,054,182 _RS38650 Position (kb) 2051 2052 2053Strain fitness (log2 ratio) -2 -1 0 1at 2050.779 kb on - strand, within QEN71_RS38635at 2050.779 kb on - strand, within QEN71_RS38635at 2050.930 kb on + strand, within QEN71_RS38635at 2050.930 kb on + strand, within QEN71_RS38635at 2050.930 kb on + strand, within QEN71_RS38635at 2051.120 kb on - strandat 2051.120 kb on - strandat 2051.120 kb on - strandat 2051.238 kb on + strandat 2051.238 kb on + strandat 2051.238 kb on + strandat 2051.239 kb on - strandat 2051.282 kb on + strandat 2051.282 kb on + strandat 2051.282 kb on + strandat 2051.283 kb on - strandat 2051.283 kb on - strandat 2051.283 kb on - strandat 2051.283 kb on - strandat 2051.283 kb on - strandat 2051.367 kb on + strandat 2051.367 kb on + strandat 2051.368 kb on - strandat 2051.368 kb on - strandat 2051.449 kb on + strand, within QEN71_RS38640at 2051.449 kb on + strand, within QEN71_RS38640at 2051.449 kb on + strand, within QEN71_RS38640at 2051.449 kb on + strand, within QEN71_RS38640at 2051.449 kb on + strand, within QEN71_RS38640at 2051.532 kb on + strand, within QEN71_RS38640at 2051.532 kb on + strand, within QEN71_RS38640at 2051.532 kb on + strand, within QEN71_RS38640at 2051.532 kb on + strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.533 kb on - strand, within QEN71_RS38640at 2051.584 kb on + strand, within QEN71_RS38640at 2051.588 kb on + strand, within QEN71_RS38640at 2051.657 kb on + strand, within QEN71_RS38640at 2051.657 kb on + strand, within QEN71_RS38640at 2051.658 kb on - strand, within QEN71_RS38640at 2051.689 kb on - strandat 2051.720 kb on - strandat 2051.720 kb on - strandat 2051.720 kb on - strandat 2051.981 kb on - strand, within QEN71_RS38645at 2052.019 kb on + strand, within QEN71_RS38645at 2052.019 kb on + strand, within QEN71_RS38645at 2052.019 kb on + strand, within QEN71_RS38645at 2052.019 kb on + strand, within QEN71_RS38645at 2052.019 kb on + strand, within QEN71_RS38645at 2052.019 kb on + strand, within QEN71_RS38645at 2052.020 kb on - strand, within QEN71_RS38645at 2052.020 kb on - strand, within QEN71_RS38645at 2052.028 kb on + strand, within QEN71_RS38645at 2052.029 kb on - strand, within QEN71_RS38645at 2052.029 kb on - strand, within QEN71_RS38645at 2052.029 kb on - strand, within QEN71_RS38645at 2052.029 kb on - strand, within QEN71_RS38645at 2052.067 kb on + strand, within QEN71_RS38645at 2052.067 kb on + strand, within QEN71_RS38645at 2052.068 kb on - strand, within QEN71_RS38645at 2052.307 kb on + strand, within QEN71_RS38645at 2052.308 kb on - strand, within QEN71_RS38645at 2052.308 kb on - strand, within QEN71_RS38645at 2052.374 kb on + strand, within QEN71_RS38645at 2052.374 kb on + strand, within QEN71_RS38645at 2052.374 kb on + strand, within QEN71_RS38645at 2052.535 kb on + strand, within QEN71_RS38645at 2052.686 kb on + strandat 2052.687 kb on - strandat 2052.724 kb on - strandat 2052.735 kb on + strandat 2052.735 kb on + strandat 2052.736 kb on - strandat 2052.736 kb on - strandat 2052.736 kb on - strandat 2052.783 kb on + strandat 2052.783 kb on + strandat 2052.784 kb on - strandat 2052.951 kb on + strandat 2052.951 kb on + strandat 2052.952 kb on - strandat 2053.122 kb on + strand, within QEN71_RS38650at 2053.318 kb on - strand, within QEN71_RS38650at 2053.323 kb on + strand, within QEN71_RS38650at 2053.387 kb on - strand, within QEN71_RS38650

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,050,779 - QEN71_RS38635 0.74 +0.6
2,050,779 - QEN71_RS38635 0.74 -1.4
2,050,930 + QEN71_RS38635 0.83 +1.5
2,050,930 + QEN71_RS38635 0.83 +0.1
2,050,930 + QEN71_RS38635 0.83 -0.6
2,051,120 - -0.1
2,051,120 - +0.1
2,051,120 - +0.6
2,051,238 + -0.0
2,051,238 + +0.3
2,051,238 + +0.4
2,051,239 - -0.2
2,051,282 + +0.9
2,051,282 + -1.0
2,051,282 + +0.0
2,051,283 - -0.9
2,051,283 - +0.1
2,051,283 - -0.6
2,051,283 - -0.2
2,051,283 - -0.0
2,051,367 + -0.2
2,051,367 + -0.5
2,051,368 - -0.4
2,051,368 - +0.3
2,051,449 + QEN71_RS38640 0.25 +1.5
2,051,449 + QEN71_RS38640 0.25 +0.4
2,051,449 + QEN71_RS38640 0.25 -0.1
2,051,449 + QEN71_RS38640 0.25 -0.0
2,051,449 + QEN71_RS38640 0.25 -1.9
2,051,532 + QEN71_RS38640 0.49 -1.4
2,051,532 + QEN71_RS38640 0.49 -0.2
2,051,532 + QEN71_RS38640 0.49 +1.7
2,051,532 + QEN71_RS38640 0.49 -0.5
2,051,533 - QEN71_RS38640 0.49 -1.9
2,051,533 - QEN71_RS38640 0.49 -0.1
2,051,533 - QEN71_RS38640 0.49 -0.2
2,051,533 - QEN71_RS38640 0.49 -1.3
2,051,533 - QEN71_RS38640 0.49 -0.1
2,051,533 - QEN71_RS38640 0.49 -0.0
2,051,533 - QEN71_RS38640 0.49 +0.3
2,051,533 - QEN71_RS38640 0.49 +0.8
2,051,533 - QEN71_RS38640 0.49 +0.2
2,051,584 + QEN71_RS38640 0.64 +0.2
2,051,588 + QEN71_RS38640 0.65 +0.2
2,051,657 + QEN71_RS38640 0.85 -0.7
2,051,657 + QEN71_RS38640 0.85 -1.8
2,051,658 - QEN71_RS38640 0.85 -1.0
2,051,689 - +0.2
2,051,720 - -0.8
2,051,720 - +0.4
2,051,720 - +0.3
2,051,981 - QEN71_RS38645 0.26 +0.2
2,052,019 + QEN71_RS38645 0.30 -1.0
2,052,019 + QEN71_RS38645 0.30 -0.6
2,052,019 + QEN71_RS38645 0.30 +0.2
2,052,019 + QEN71_RS38645 0.30 -1.0
2,052,019 + QEN71_RS38645 0.30 +0.1
2,052,019 + QEN71_RS38645 0.30 -0.7
2,052,020 - QEN71_RS38645 0.30 -0.8
2,052,020 - QEN71_RS38645 0.30 +0.6
2,052,028 + QEN71_RS38645 0.30 -0.3
2,052,029 - QEN71_RS38645 0.30 -0.9
2,052,029 - QEN71_RS38645 0.30 +0.1
2,052,029 - QEN71_RS38645 0.30 -1.0
2,052,029 - QEN71_RS38645 0.30 -0.1
2,052,067 + QEN71_RS38645 0.34 +0.0
2,052,067 + QEN71_RS38645 0.34 -0.8
2,052,068 - QEN71_RS38645 0.34 -0.3
2,052,307 + QEN71_RS38645 0.58 +0.1
2,052,308 - QEN71_RS38645 0.58 -1.1
2,052,308 - QEN71_RS38645 0.58 -0.7
2,052,374 + QEN71_RS38645 0.64 -0.8
2,052,374 + QEN71_RS38645 0.64 +0.1
2,052,374 + QEN71_RS38645 0.64 -1.6
2,052,535 + QEN71_RS38645 0.80 +1.3
2,052,686 + -0.0
2,052,687 - +0.8
2,052,724 - -0.3
2,052,735 + -0.3
2,052,735 + +1.2
2,052,736 - -1.0
2,052,736 - -1.3
2,052,736 - -0.9
2,052,783 + +1.5
2,052,783 + -0.1
2,052,784 - -0.8
2,052,951 + -0.2
2,052,951 + -0.4
2,052,952 - -0.7
2,053,122 + QEN71_RS38650 0.20 -2.0
2,053,318 - QEN71_RS38650 0.35 -1.3
2,053,323 + QEN71_RS38650 0.35 +0.6
2,053,387 - QEN71_RS38650 0.40 -0.7

Or see this region's nucleotide sequence