Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37100

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37090 and QEN71_RS37095 are separated by 19 nucleotidesQEN71_RS37095 and QEN71_RS37100 are separated by 30 nucleotidesQEN71_RS37100 and QEN71_RS37105 are separated by 28 nucleotides QEN71_RS37090: QEN71_RS37090 - NAD(P)-dependent oxidoreductase, at 1,690,009 to 1,690,896 _RS37090 QEN71_RS37095: QEN71_RS37095 - NIPSNAP family protein, at 1,690,916 to 1,691,242 _RS37095 QEN71_RS37100: QEN71_RS37100 - NAD(P)-dependent oxidoreductase, at 1,691,273 to 1,692,244 _RS37100 QEN71_RS37105: QEN71_RS37105 - MmgE/PrpD family protein, at 1,692,273 to 1,693,658 _RS37105 Position (kb) 1691 1692 1693Strain fitness (log2 ratio) -2 -1 0 1at 1690.358 kb on + strand, within QEN71_RS37090at 1690.358 kb on + strand, within QEN71_RS37090at 1690.359 kb on - strand, within QEN71_RS37090at 1690.638 kb on + strand, within QEN71_RS37090at 1690.638 kb on + strand, within QEN71_RS37090at 1690.910 kb on + strandat 1691.082 kb on + strand, within QEN71_RS37095at 1691.221 kb on - strandat 1691.221 kb on - strandat 1691.259 kb on - strandat 1692.089 kb on - strand, within QEN71_RS37100at 1692.274 kb on + strandat 1692.274 kb on + strandat 1692.275 kb on - strandat 1692.342 kb on + strandat 1692.343 kb on - strandat 1692.643 kb on - strand, within QEN71_RS37105at 1692.835 kb on + strand, within QEN71_RS37105at 1692.835 kb on + strand, within QEN71_RS37105at 1692.836 kb on - strand, within QEN71_RS37105at 1692.836 kb on - strand, within QEN71_RS37105at 1693.183 kb on + strand, within QEN71_RS37105

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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1,690,358 + QEN71_RS37090 0.39 -0.6
1,690,358 + QEN71_RS37090 0.39 +0.5
1,690,359 - QEN71_RS37090 0.39 -1.2
1,690,638 + QEN71_RS37090 0.71 -0.1
1,690,638 + QEN71_RS37090 0.71 -1.4
1,690,910 + -0.1
1,691,082 + QEN71_RS37095 0.51 -1.2
1,691,221 - -2.1
1,691,221 - -0.4
1,691,259 - -1.0
1,692,089 - QEN71_RS37100 0.84 -1.8
1,692,274 + -0.2
1,692,274 + -0.8
1,692,275 - -0.5
1,692,342 + -0.7
1,692,343 - -1.2
1,692,643 - QEN71_RS37105 0.27 +0.1
1,692,835 + QEN71_RS37105 0.41 -0.0
1,692,835 + QEN71_RS37105 0.41 -0.2
1,692,836 - QEN71_RS37105 0.41 -0.4
1,692,836 - QEN71_RS37105 0.41 +0.1
1,693,183 + QEN71_RS37105 0.66 +0.7

Or see this region's nucleotide sequence