Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36600

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36595 and QEN71_RS36600 are separated by 29 nucleotidesQEN71_RS36600 and QEN71_RS36605 are separated by 44 nucleotides QEN71_RS36595: QEN71_RS36595 - sugar ABC transporter permease, at 1,592,896 to 1,593,798 _RS36595 QEN71_RS36600: QEN71_RS36600 - carbohydrate ABC transporter permease, at 1,593,828 to 1,594,679 _RS36600 QEN71_RS36605: QEN71_RS36605 - beta-galactosidase, at 1,594,724 to 1,596,697 _RS36605 Position (kb) 1593 1594 1595Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1593.107 kb on - strand, within QEN71_RS36595at 1593.107 kb on - strand, within QEN71_RS36595at 1593.136 kb on + strand, within QEN71_RS36595at 1593.137 kb on - strand, within QEN71_RS36595at 1593.214 kb on + strand, within QEN71_RS36595at 1593.214 kb on + strand, within QEN71_RS36595at 1593.215 kb on - strand, within QEN71_RS36595at 1593.316 kb on + strand, within QEN71_RS36595at 1593.317 kb on - strand, within QEN71_RS36595at 1593.317 kb on - strand, within QEN71_RS36595at 1593.385 kb on - strand, within QEN71_RS36595at 1593.667 kb on + strand, within QEN71_RS36595at 1593.670 kb on + strand, within QEN71_RS36595at 1593.670 kb on + strand, within QEN71_RS36595at 1593.670 kb on + strand, within QEN71_RS36595at 1593.671 kb on - strand, within QEN71_RS36595at 1593.671 kb on - strand, within QEN71_RS36595at 1593.698 kb on - strand, within QEN71_RS36595at 1593.755 kb on - strandat 1593.831 kb on + strandat 1593.876 kb on + strandat 1593.877 kb on - strandat 1594.017 kb on + strand, within QEN71_RS36600at 1594.018 kb on - strand, within QEN71_RS36600at 1594.141 kb on - strand, within QEN71_RS36600at 1594.261 kb on + strand, within QEN71_RS36600at 1594.395 kb on + strand, within QEN71_RS36600at 1594.395 kb on + strand, within QEN71_RS36600at 1594.396 kb on - strand, within QEN71_RS36600at 1594.476 kb on + strand, within QEN71_RS36600at 1594.655 kb on + strandat 1594.686 kb on + strandat 1594.700 kb on + strandat 1594.868 kb on + strandat 1595.022 kb on - strand, within QEN71_RS36605at 1595.529 kb on - strand, within QEN71_RS36605at 1595.583 kb on - strand, within QEN71_RS36605

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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1,593,107 - QEN71_RS36595 0.23 -1.1
1,593,107 - QEN71_RS36595 0.23 -0.2
1,593,136 + QEN71_RS36595 0.27 -0.8
1,593,137 - QEN71_RS36595 0.27 -2.2
1,593,214 + QEN71_RS36595 0.35 +0.8
1,593,214 + QEN71_RS36595 0.35 -0.4
1,593,215 - QEN71_RS36595 0.35 +1.6
1,593,316 + QEN71_RS36595 0.47 +0.2
1,593,317 - QEN71_RS36595 0.47 -1.6
1,593,317 - QEN71_RS36595 0.47 +0.7
1,593,385 - QEN71_RS36595 0.54 +0.6
1,593,667 + QEN71_RS36595 0.85 +3.0
1,593,670 + QEN71_RS36595 0.86 +0.7
1,593,670 + QEN71_RS36595 0.86 +0.2
1,593,670 + QEN71_RS36595 0.86 -0.8
1,593,671 - QEN71_RS36595 0.86 +0.0
1,593,671 - QEN71_RS36595 0.86 -1.6
1,593,698 - QEN71_RS36595 0.89 -2.6
1,593,755 - -0.2
1,593,831 + -0.2
1,593,876 + -3.2
1,593,877 - -1.1
1,594,017 + QEN71_RS36600 0.22 -1.2
1,594,018 - QEN71_RS36600 0.22 -0.5
1,594,141 - QEN71_RS36600 0.37 -0.8
1,594,261 + QEN71_RS36600 0.51 -1.7
1,594,395 + QEN71_RS36600 0.67 -1.9
1,594,395 + QEN71_RS36600 0.67 -1.0
1,594,396 - QEN71_RS36600 0.67 +0.2
1,594,476 + QEN71_RS36600 0.76 -0.7
1,594,655 + -0.6
1,594,686 + -0.1
1,594,700 + +0.5
1,594,868 + -0.2
1,595,022 - QEN71_RS36605 0.15 +0.2
1,595,529 - QEN71_RS36605 0.41 +0.4
1,595,583 - QEN71_RS36605 0.44 -0.0

Or see this region's nucleotide sequence