Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34825

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34820 and QEN71_RS34825 overlap by 1 nucleotidesQEN71_RS34825 and QEN71_RS34830 are separated by 656 nucleotides QEN71_RS34820: QEN71_RS34820 - alpha-amylase family glycosyl hydrolase, at 1,135,050 to 1,136,888 _RS34820 QEN71_RS34825: QEN71_RS34825 - hypothetical protein, at 1,136,888 to 1,137,352 _RS34825 QEN71_RS34830: QEN71_RS34830 - heme peroxidase family protein, at 1,138,009 to 1,139,736 _RS34830 Position (kb) 1136 1137 1138Strain fitness (log2 ratio) -1 0 1at 1136.117 kb on - strand, within QEN71_RS34820at 1136.209 kb on + strand, within QEN71_RS34820at 1136.273 kb on - strand, within QEN71_RS34820at 1136.377 kb on - strand, within QEN71_RS34820at 1136.656 kb on + strand, within QEN71_RS34820at 1136.656 kb on + strand, within QEN71_RS34820at 1136.657 kb on - strand, within QEN71_RS34820at 1136.674 kb on + strand, within QEN71_RS34820at 1136.675 kb on - strand, within QEN71_RS34820at 1137.197 kb on + strand, within QEN71_RS34825at 1137.309 kb on + strandat 1137.335 kb on - strandat 1137.493 kb on + strandat 1137.791 kb on - strandat 1137.930 kb on + strandat 1137.930 kb on + strandat 1137.951 kb on + strandat 1137.951 kb on + strandat 1138.136 kb on + strandat 1138.197 kb on - strand, within QEN71_RS34830at 1138.285 kb on + strand, within QEN71_RS34830at 1138.286 kb on - strand, within QEN71_RS34830

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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1,136,117 - QEN71_RS34820 0.58 -0.3
1,136,209 + QEN71_RS34820 0.63 -0.8
1,136,273 - QEN71_RS34820 0.67 -0.4
1,136,377 - QEN71_RS34820 0.72 +0.1
1,136,656 + QEN71_RS34820 0.87 -0.1
1,136,656 + QEN71_RS34820 0.87 +0.1
1,136,657 - QEN71_RS34820 0.87 -1.4
1,136,674 + QEN71_RS34820 0.88 +0.5
1,136,675 - QEN71_RS34820 0.88 +0.4
1,137,197 + QEN71_RS34825 0.66 -0.3
1,137,309 + -0.9
1,137,335 - +0.4
1,137,493 + -1.4
1,137,791 - -0.5
1,137,930 + +0.6
1,137,930 + +1.1
1,137,951 + +0.6
1,137,951 + +0.2
1,138,136 + -0.9
1,138,197 - QEN71_RS34830 0.11 -1.3
1,138,285 + QEN71_RS34830 0.16 -0.8
1,138,286 - QEN71_RS34830 0.16 +0.7

Or see this region's nucleotide sequence