Experiment: LB_noSalt with Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30935 and QEN71_RS30940 overlap by 4 nucleotides QEN71_RS30940 and QEN71_RS30945 overlap by 4 nucleotides QEN71_RS30945 and QEN71_RS30950 are separated by 0 nucleotides
QEN71_RS30935: QEN71_RS30935 - hypothetical protein, at 291,069 to 291,599
_RS30935
QEN71_RS30940: QEN71_RS30940 - hypothetical protein, at 291,596 to 292,165
_RS30940
QEN71_RS30945: QEN71_RS30945 - hypothetical protein, at 292,162 to 292,758
_RS30945
QEN71_RS30950: QEN71_RS30950 - secretin N-terminal domain-containing protein, at 292,759 to 295,050
_RS30950
Position (kb) 292
293 Strain fitness (log2 ratio) -2
-1
0
1
2 at 291.475 kb on - strand, within QEN71_RS30935 at 291.945 kb on - strand, within QEN71_RS30940 at 291.945 kb on - strand, within QEN71_RS30940 at 291.945 kb on - strand, within QEN71_RS30940 at 291.974 kb on + strand, within QEN71_RS30940 at 291.974 kb on + strand, within QEN71_RS30940 at 291.993 kb on + strand, within QEN71_RS30940 at 291.993 kb on + strand, within QEN71_RS30940 at 291.993 kb on + strand, within QEN71_RS30940 at 292.555 kb on + strand, within QEN71_RS30945 at 292.561 kb on + strand, within QEN71_RS30945 at 292.561 kb on + strand, within QEN71_RS30945 at 292.653 kb on - strand, within QEN71_RS30945 at 292.706 kb on - strand at 293.038 kb on + strand, within QEN71_RS30950 at 293.078 kb on - strand, within QEN71_RS30950 at 293.191 kb on + strand, within QEN71_RS30950 at 293.192 kb on - strand, within QEN71_RS30950 at 293.560 kb on + strand, within QEN71_RS30950 at 293.590 kb on + strand, within QEN71_RS30950 at 293.590 kb on + strand, within QEN71_RS30950 at 293.706 kb on + strand, within QEN71_RS30950
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM remove 291,475 - QEN71_RS30935 0.76 +0.1 291,945 - QEN71_RS30940 0.61 -1.8 291,945 - QEN71_RS30940 0.61 +0.6 291,945 - QEN71_RS30940 0.61 -1.0 291,974 + QEN71_RS30940 0.66 +2.2 291,974 + QEN71_RS30940 0.66 +1.7 291,993 + QEN71_RS30940 0.70 -1.8 291,993 + QEN71_RS30940 0.70 -0.0 291,993 + QEN71_RS30940 0.70 -0.2 292,555 + QEN71_RS30945 0.66 -0.9 292,561 + QEN71_RS30945 0.67 -0.4 292,561 + QEN71_RS30945 0.67 +0.2 292,653 - QEN71_RS30945 0.82 -1.7 292,706 - -0.1 293,038 + QEN71_RS30950 0.12 -1.8 293,078 - QEN71_RS30950 0.14 -0.0 293,191 + QEN71_RS30950 0.19 +0.7 293,192 - QEN71_RS30950 0.19 -0.1 293,560 + QEN71_RS30950 0.35 -0.1 293,590 + QEN71_RS30950 0.36 +0.3 293,590 + QEN71_RS30950 0.36 -1.3 293,706 + QEN71_RS30950 0.41 -0.4
Or see this region's nucleotide sequence