Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28110

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28105 and QEN71_RS28110 are separated by 279 nucleotidesQEN71_RS28110 and QEN71_RS28115 are separated by 247 nucleotides QEN71_RS28105: QEN71_RS28105 - c-type cytochrome, at 6,251,266 to 6,251,919 _RS28105 QEN71_RS28110: QEN71_RS28110 - ribosome biogenesis GTP-binding protein YihA/YsxC, at 6,252,199 to 6,252,864 _RS28110 QEN71_RS28115: QEN71_RS28115 - porphobilinogen synthase, at 6,253,112 to 6,254,110 _RS28115 Position (kb) 6252 6253Strain fitness (log2 ratio) -2 -1 0 1 2at 6251.257 kb on + strandat 6251.258 kb on - strandat 6251.258 kb on - strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.286 kb on - strandat 6251.402 kb on + strand, within QEN71_RS28105at 6251.402 kb on + strand, within QEN71_RS28105at 6251.432 kb on + strand, within QEN71_RS28105at 6251.513 kb on + strand, within QEN71_RS28105at 6251.513 kb on + strand, within QEN71_RS28105at 6251.585 kb on + strand, within QEN71_RS28105at 6251.788 kb on + strand, within QEN71_RS28105at 6251.949 kb on + strandat 6251.949 kb on + strandat 6251.950 kb on - strandat 6251.950 kb on - strandat 6251.950 kb on - strandat 6251.950 kb on - strandat 6251.965 kb on + strandat 6251.965 kb on + strandat 6251.965 kb on + strandat 6251.966 kb on - strandat 6251.966 kb on - strandat 6252.022 kb on - strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.036 kb on + strandat 6252.036 kb on + strandat 6252.036 kb on + strandat 6252.036 kb on + strandat 6252.036 kb on + strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.873 kb on + strandat 6252.873 kb on + strandat 6252.873 kb on + strandat 6252.874 kb on - strandat 6252.874 kb on - strandat 6252.955 kb on + strandat 6252.964 kb on + strandat 6252.964 kb on + strandat 6252.965 kb on - strandat 6253.019 kb on - strandat 6253.019 kb on - strandat 6253.038 kb on + strandat 6253.039 kb on - strandat 6253.039 kb on - strandat 6253.039 kb on - strandat 6253.039 kb on - strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.043 kb on + strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.044 kb on - strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.045 kb on + strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.046 kb on - strandat 6253.103 kb on + strandat 6253.103 kb on + strandat 6253.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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6,251,257 + -1.7
6,251,258 - +0.8
6,251,258 - -1.9
6,251,267 + -1.1
6,251,267 + -0.4
6,251,267 + -1.9
6,251,267 + +0.1
6,251,267 + -2.1
6,251,267 + -1.5
6,251,267 + -0.7
6,251,268 - -0.5
6,251,268 - -1.1
6,251,268 - +0.1
6,251,268 - +0.6
6,251,268 - -0.8
6,251,268 - -0.1
6,251,268 - -0.6
6,251,268 - -1.2
6,251,268 - -0.1
6,251,268 - -1.1
6,251,268 - +1.9
6,251,286 - -0.1
6,251,402 + QEN71_RS28105 0.21 +0.2
6,251,402 + QEN71_RS28105 0.21 +0.2
6,251,432 + QEN71_RS28105 0.25 +0.2
6,251,513 + QEN71_RS28105 0.38 -2.1
6,251,513 + QEN71_RS28105 0.38 -0.1
6,251,585 + QEN71_RS28105 0.49 -0.9
6,251,788 + QEN71_RS28105 0.80 -0.1
6,251,949 + -0.7
6,251,949 + -1.4
6,251,950 - +0.4
6,251,950 - -1.0
6,251,950 - -0.0
6,251,950 - +0.1
6,251,965 + -0.4
6,251,965 + -0.4
6,251,965 + -1.3
6,251,966 - +0.1
6,251,966 - +0.0
6,252,022 - -0.9
6,252,031 + +1.0
6,252,031 + +0.6
6,252,031 + -1.2
6,252,031 + -2.4
6,252,031 + -0.3
6,252,031 + -0.4
6,252,031 + +0.1
6,252,031 + +0.2
6,252,031 + -0.6
6,252,031 + +0.2
6,252,031 + +0.7
6,252,031 + +0.6
6,252,031 + -0.6
6,252,032 - -0.5
6,252,032 - -1.5
6,252,032 - +0.4
6,252,032 - -0.8
6,252,032 - -0.0
6,252,032 - +0.5
6,252,032 - +0.4
6,252,032 - -1.8
6,252,036 + -0.0
6,252,036 + -1.5
6,252,036 + +0.3
6,252,036 + +0.5
6,252,036 + -2.6
6,252,037 - +1.0
6,252,037 - +1.1
6,252,037 - +0.2
6,252,037 - +1.0
6,252,037 - -2.3
6,252,037 - +0.0
6,252,037 - +0.5
6,252,041 + +1.3
6,252,041 + +0.9
6,252,041 + +0.4
6,252,041 + +0.2
6,252,041 + +0.3
6,252,041 + -0.9
6,252,862 + +0.5
6,252,862 + -0.6
6,252,862 + -1.5
6,252,862 + +0.8
6,252,863 - +0.5
6,252,863 - -0.1
6,252,863 - +0.1
6,252,863 - +0.4
6,252,873 + -0.6
6,252,873 + +0.3
6,252,873 + -0.6
6,252,874 - +0.1
6,252,874 - +0.2
6,252,955 + -1.3
6,252,964 + -0.0
6,252,964 + -0.2
6,252,965 - -0.8
6,253,019 - -0.2
6,253,019 - -0.1
6,253,038 + +0.4
6,253,039 - +0.3
6,253,039 - +0.0
6,253,039 - -1.1
6,253,039 - -0.4
6,253,043 + +1.8
6,253,043 + -0.0
6,253,043 + -1.1
6,253,043 + -0.1
6,253,043 + -0.3
6,253,043 + +1.2
6,253,043 + +0.2
6,253,043 + -0.5
6,253,043 + -0.2
6,253,043 + +1.0
6,253,043 + -0.1
6,253,043 + -1.4
6,253,043 + +0.2
6,253,043 + +0.6
6,253,043 + -0.0
6,253,043 + -0.2
6,253,044 - +0.0
6,253,044 - -0.8
6,253,044 - +0.7
6,253,044 - -0.2
6,253,044 - +0.1
6,253,044 - -0.1
6,253,044 - -0.0
6,253,044 - -0.2
6,253,044 - -0.1
6,253,044 - -0.5
6,253,044 - -0.7
6,253,044 - +0.2
6,253,044 - +0.6
6,253,044 - -0.3
6,253,045 + -0.2
6,253,045 + +0.5
6,253,045 + -0.9
6,253,045 + -0.5
6,253,045 + -0.1
6,253,045 + +0.8
6,253,045 + +0.1
6,253,045 + -0.4
6,253,045 + -0.4
6,253,045 + -0.4
6,253,045 + +0.9
6,253,045 + +0.5
6,253,045 + +0.3
6,253,045 + +0.1
6,253,045 + -0.5
6,253,045 + +0.8
6,253,045 + -0.2
6,253,045 + -2.1
6,253,045 + -0.4
6,253,045 + +2.0
6,253,045 + +0.4
6,253,045 + -0.2
6,253,045 + -0.8
6,253,045 + -0.4
6,253,045 + -0.8
6,253,045 + +0.6
6,253,046 - -1.1
6,253,046 - -0.0
6,253,046 - -0.4
6,253,046 - -1.0
6,253,046 - -0.8
6,253,046 - -0.1
6,253,046 - -0.2
6,253,046 - -0.0
6,253,046 - +1.6
6,253,046 - -0.5
6,253,046 - -1.3
6,253,046 - -0.1
6,253,046 - +0.6
6,253,046 - -0.1
6,253,046 - +0.2
6,253,046 - +0.6
6,253,046 - -0.0
6,253,046 - +0.2
6,253,046 - +0.4
6,253,046 - -0.7
6,253,046 - +0.7
6,253,046 - +1.9
6,253,046 - -0.9
6,253,046 - +0.2
6,253,103 + +0.0
6,253,103 + -0.7
6,253,103 + -1.1

Or see this region's nucleotide sequence