Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28065

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28060 and QEN71_RS28065 are separated by 254 nucleotidesQEN71_RS28065 and QEN71_RS28070 are separated by 101 nucleotidesQEN71_RS28070 and QEN71_RS28075 are separated by 35 nucleotidesQEN71_RS28075 and QEN71_RS28080 are separated by 9 nucleotides QEN71_RS28060: QEN71_RS28060 - pilus assembly protein PilM, at 6,240,099 to 6,241,058 _RS28060 QEN71_RS28065: QEN71_RS28065 - penicillin-binding protein 1A, at 6,241,313 to 6,243,703 _RS28065 QEN71_RS28070: QEN71_RS28070 - iron donor protein CyaY, at 6,243,805 to 6,244,122 _RS28070 QEN71_RS28075: QEN71_RS28075 - lipoprotein, at 6,244,158 to 6,244,457 _RS28075 QEN71_RS28080: QEN71_RS28080 - diaminopimelate decarboxylase, at 6,244,467 to 6,245,729 _RS28080 Position (kb) 6241 6242 6243 6244Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6240.355 kb on + strand, within QEN71_RS28060at 6240.355 kb on + strand, within QEN71_RS28060at 6240.355 kb on + strand, within QEN71_RS28060at 6240.356 kb on - strand, within QEN71_RS28060at 6240.356 kb on - strand, within QEN71_RS28060at 6240.404 kb on + strand, within QEN71_RS28060at 6240.415 kb on + strand, within QEN71_RS28060at 6240.448 kb on + strand, within QEN71_RS28060at 6240.449 kb on - strand, within QEN71_RS28060at 6240.449 kb on - strand, within QEN71_RS28060at 6240.637 kb on + strand, within QEN71_RS28060at 6240.638 kb on - strand, within QEN71_RS28060at 6240.638 kb on - strand, within QEN71_RS28060at 6240.638 kb on - strand, within QEN71_RS28060at 6240.697 kb on - strand, within QEN71_RS28060at 6240.752 kb on - strand, within QEN71_RS28060at 6240.752 kb on - strand, within QEN71_RS28060at 6240.752 kb on - strand, within QEN71_RS28060at 6240.752 kb on - strand, within QEN71_RS28060at 6240.921 kb on - strand, within QEN71_RS28060at 6241.039 kb on - strandat 6241.075 kb on + strandat 6241.075 kb on + strandat 6241.076 kb on - strandat 6241.076 kb on - strandat 6241.076 kb on - strandat 6241.076 kb on - strandat 6241.076 kb on - strandat 6241.076 kb on - strandat 6241.076 kb on - strandat 6241.105 kb on + strandat 6241.105 kb on + strandat 6241.106 kb on - strandat 6241.106 kb on - strandat 6241.106 kb on - strandat 6241.173 kb on + strandat 6241.174 kb on - strandat 6241.174 kb on - strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.214 kb on + strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.215 kb on - strandat 6241.251 kb on - strandat 6241.251 kb on - strandat 6241.251 kb on - strandat 6241.282 kb on + strandat 6241.282 kb on + strandat 6241.282 kb on + strandat 6241.282 kb on + strandat 6241.283 kb on - strandat 6241.283 kb on - strandat 6241.284 kb on + strandat 6241.312 kb on + strandat 6241.312 kb on + strandat 6241.312 kb on + strandat 6241.312 kb on + strandat 6241.312 kb on + strandat 6241.312 kb on + strandat 6241.312 kb on + strandat 6241.313 kb on - strandat 6241.313 kb on - strandat 6241.313 kb on - strandat 6241.330 kb on + strandat 6241.527 kb on - strandat 6241.646 kb on + strand, within QEN71_RS28065at 6241.878 kb on - strand, within QEN71_RS28065at 6242.045 kb on + strand, within QEN71_RS28065at 6242.045 kb on + strand, within QEN71_RS28065at 6242.163 kb on - strand, within QEN71_RS28065at 6242.178 kb on + strand, within QEN71_RS28065at 6242.217 kb on - strand, within QEN71_RS28065at 6242.217 kb on - strand, within QEN71_RS28065at 6242.774 kb on + strand, within QEN71_RS28065at 6242.774 kb on + strand, within QEN71_RS28065at 6242.982 kb on - strand, within QEN71_RS28065at 6242.993 kb on + strand, within QEN71_RS28065at 6243.132 kb on - strand, within QEN71_RS28065at 6243.237 kb on - strand, within QEN71_RS28065at 6243.489 kb on + strandat 6243.554 kb on + strandat 6243.701 kb on + strandat 6243.701 kb on + strandat 6243.701 kb on + strandat 6243.701 kb on + strandat 6243.701 kb on + strandat 6243.702 kb on - strandat 6243.702 kb on - strandat 6243.702 kb on - strandat 6243.702 kb on - strandat 6243.702 kb on - strandat 6243.702 kb on - strandat 6243.702 kb on - strandat 6243.758 kb on + strandat 6243.758 kb on + strandat 6243.848 kb on + strand, within QEN71_RS28070at 6243.848 kb on + strand, within QEN71_RS28070at 6243.866 kb on + strand, within QEN71_RS28070at 6243.866 kb on + strand, within QEN71_RS28070at 6243.867 kb on - strand, within QEN71_RS28070at 6243.867 kb on - strand, within QEN71_RS28070at 6243.867 kb on - strand, within QEN71_RS28070at 6244.106 kb on + strandat 6244.106 kb on + strandat 6244.107 kb on - strandat 6244.107 kb on - strandat 6244.107 kb on - strandat 6244.107 kb on - strandat 6244.125 kb on + strandat 6244.125 kb on + strandat 6244.125 kb on + strandat 6244.125 kb on + strandat 6244.125 kb on + strandat 6244.125 kb on + strandat 6244.125 kb on + strandat 6244.139 kb on + strandat 6244.139 kb on + strandat 6244.143 kb on + strandat 6244.153 kb on + strandat 6244.367 kb on + strand, within QEN71_RS28075at 6244.376 kb on + strand, within QEN71_RS28075at 6244.455 kb on + strandat 6244.455 kb on + strandat 6244.455 kb on + strandat 6244.455 kb on + strandat 6244.455 kb on + strandat 6244.456 kb on - strandat 6244.456 kb on - strandat 6244.456 kb on - strandat 6244.456 kb on - strandat 6244.488 kb on + strandat 6244.489 kb on - strandat 6244.489 kb on - strandat 6244.501 kb on + strandat 6244.501 kb on + strandat 6244.501 kb on + strandat 6244.502 kb on - strandat 6244.502 kb on - strandat 6244.560 kb on + strandat 6244.560 kb on + strandat 6244.560 kb on + strandat 6244.560 kb on + strandat 6244.560 kb on + strandat 6244.560 kb on + strandat 6244.561 kb on - strandat 6244.561 kb on - strandat 6244.561 kb on - strandat 6244.561 kb on - strandat 6244.561 kb on - strandat 6244.561 kb on - strandat 6244.561 kb on - strandat 6244.561 kb on - strandat 6244.566 kb on + strandat 6244.567 kb on - strandat 6244.602 kb on + strand, within QEN71_RS28080at 6244.602 kb on + strand, within QEN71_RS28080at 6244.603 kb on - strand, within QEN71_RS28080

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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6,240,355 + QEN71_RS28060 0.27 -0.7
6,240,355 + QEN71_RS28060 0.27 +0.9
6,240,355 + QEN71_RS28060 0.27 -0.0
6,240,356 - QEN71_RS28060 0.27 +0.6
6,240,356 - QEN71_RS28060 0.27 -0.1
6,240,404 + QEN71_RS28060 0.32 +0.2
6,240,415 + QEN71_RS28060 0.33 -0.6
6,240,448 + QEN71_RS28060 0.36 -0.2
6,240,449 - QEN71_RS28060 0.36 -1.2
6,240,449 - QEN71_RS28060 0.36 +1.1
6,240,637 + QEN71_RS28060 0.56 -0.0
6,240,638 - QEN71_RS28060 0.56 +1.5
6,240,638 - QEN71_RS28060 0.56 -1.2
6,240,638 - QEN71_RS28060 0.56 -0.8
6,240,697 - QEN71_RS28060 0.62 +0.8
6,240,752 - QEN71_RS28060 0.68 +0.1
6,240,752 - QEN71_RS28060 0.68 +0.6
6,240,752 - QEN71_RS28060 0.68 -0.5
6,240,752 - QEN71_RS28060 0.68 +0.2
6,240,921 - QEN71_RS28060 0.86 -1.1
6,241,039 - -0.5
6,241,075 + +1.4
6,241,075 + -1.9
6,241,076 - -0.6
6,241,076 - -0.1
6,241,076 - +1.5
6,241,076 - -0.0
6,241,076 - -0.0
6,241,076 - -1.5
6,241,076 - -0.0
6,241,105 + -0.4
6,241,105 + -1.1
6,241,106 - -0.6
6,241,106 - -1.6
6,241,106 - -0.0
6,241,173 + +0.2
6,241,174 - -0.1
6,241,174 - -0.1
6,241,214 + +1.2
6,241,214 + +1.0
6,241,214 + -1.6
6,241,214 + +0.1
6,241,214 + +0.9
6,241,214 + +0.4
6,241,214 + +0.1
6,241,214 + -0.6
6,241,214 + +0.2
6,241,214 + -1.2
6,241,214 + -0.5
6,241,214 + -1.4
6,241,214 + +0.3
6,241,214 + -0.3
6,241,215 - -2.8
6,241,215 - -1.2
6,241,215 - -0.9
6,241,215 - -1.7
6,241,215 - +0.7
6,241,215 - +1.0
6,241,215 - +0.9
6,241,215 - -0.8
6,241,215 - -0.3
6,241,215 - -2.6
6,241,215 - -0.1
6,241,215 - +0.1
6,241,251 - -0.1
6,241,251 - -0.4
6,241,251 - +1.2
6,241,282 + +0.1
6,241,282 + +0.4
6,241,282 + -1.1
6,241,282 + +0.2
6,241,283 - +0.9
6,241,283 - -0.2
6,241,284 + +0.4
6,241,312 + -0.5
6,241,312 + -0.3
6,241,312 + -0.4
6,241,312 + -0.7
6,241,312 + -0.6
6,241,312 + -0.2
6,241,312 + +0.2
6,241,313 - -0.4
6,241,313 - +0.6
6,241,313 - -1.1
6,241,330 + -2.6
6,241,527 - +0.5
6,241,646 + QEN71_RS28065 0.14 -0.8
6,241,878 - QEN71_RS28065 0.24 +0.5
6,242,045 + QEN71_RS28065 0.31 -0.6
6,242,045 + QEN71_RS28065 0.31 -0.1
6,242,163 - QEN71_RS28065 0.36 -0.1
6,242,178 + QEN71_RS28065 0.36 +0.2
6,242,217 - QEN71_RS28065 0.38 +0.2
6,242,217 - QEN71_RS28065 0.38 +0.6
6,242,774 + QEN71_RS28065 0.61 -1.5
6,242,774 + QEN71_RS28065 0.61 +1.2
6,242,982 - QEN71_RS28065 0.70 +0.2
6,242,993 + QEN71_RS28065 0.70 -1.2
6,243,132 - QEN71_RS28065 0.76 -0.1
6,243,237 - QEN71_RS28065 0.80 -0.6
6,243,489 + +0.2
6,243,554 + +0.4
6,243,701 + -0.5
6,243,701 + +0.2
6,243,701 + -1.2
6,243,701 + -0.4
6,243,701 + -0.5
6,243,702 - +0.5
6,243,702 - -0.6
6,243,702 - -0.2
6,243,702 - +0.6
6,243,702 - -0.1
6,243,702 - +1.9
6,243,702 - +0.9
6,243,758 + +0.3
6,243,758 + +1.2
6,243,848 + QEN71_RS28070 0.14 -0.5
6,243,848 + QEN71_RS28070 0.14 -1.5
6,243,866 + QEN71_RS28070 0.19 +2.8
6,243,866 + QEN71_RS28070 0.19 -0.4
6,243,867 - QEN71_RS28070 0.19 -1.1
6,243,867 - QEN71_RS28070 0.19 -0.8
6,243,867 - QEN71_RS28070 0.19 -0.9
6,244,106 + +0.1
6,244,106 + -0.7
6,244,107 - -1.6
6,244,107 - -0.9
6,244,107 - -1.1
6,244,107 - -0.9
6,244,125 + +1.1
6,244,125 + -0.5
6,244,125 + -3.2
6,244,125 + -1.0
6,244,125 + -2.7
6,244,125 + +0.1
6,244,125 + +0.2
6,244,139 + -0.1
6,244,139 + +0.3
6,244,143 + +0.2
6,244,153 + +0.4
6,244,367 + QEN71_RS28075 0.70 -0.9
6,244,376 + QEN71_RS28075 0.73 +0.1
6,244,455 + -0.5
6,244,455 + -0.8
6,244,455 + +0.1
6,244,455 + +0.2
6,244,455 + -1.9
6,244,456 - -0.8
6,244,456 - -0.8
6,244,456 - -0.1
6,244,456 - -0.8
6,244,488 + -0.4
6,244,489 - -0.5
6,244,489 - -0.6
6,244,501 + -0.1
6,244,501 + -0.5
6,244,501 + -0.1
6,244,502 - -1.4
6,244,502 - -1.0
6,244,560 + +0.2
6,244,560 + -0.6
6,244,560 + -1.8
6,244,560 + +1.9
6,244,560 + +1.2
6,244,560 + -0.5
6,244,561 - -1.0
6,244,561 - -0.8
6,244,561 - -2.5
6,244,561 - -0.9
6,244,561 - -0.7
6,244,561 - +0.0
6,244,561 - -1.6
6,244,561 - +0.3
6,244,566 + +0.6
6,244,567 - +0.2
6,244,602 + QEN71_RS28080 0.11 -0.3
6,244,602 + QEN71_RS28080 0.11 +0.3
6,244,603 - QEN71_RS28080 0.11 -0.1

Or see this region's nucleotide sequence