Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27675

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27670 and QEN71_RS27675 are separated by 9 nucleotidesQEN71_RS27675 and QEN71_RS27680 are separated by 93 nucleotidesQEN71_RS27680 and QEN71_RS27685 are separated by 24 nucleotides QEN71_RS27670: QEN71_RS27670 - peptide chain release factor 1, at 6,166,731 to 6,167,813 _RS27670 QEN71_RS27675: QEN71_RS27675 - peptide chain release factor N(5)-glutamine methyltransferase, at 6,167,823 to 6,168,671 _RS27675 QEN71_RS27680: QEN71_RS27680 - Grx4 family monothiol glutaredoxin, at 6,168,765 to 6,169,076 _RS27680 QEN71_RS27685: QEN71_RS27685 - UbiX family flavin prenyltransferase, at 6,169,101 to 6,169,700 _RS27685 Position (kb) 6167 6168 6169Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 6167.851 kb on + strandat 6167.852 kb on - strandat 6167.852 kb on - strandat 6167.888 kb on + strandat 6168.340 kb on - strand, within QEN71_RS27675at 6168.393 kb on + strand, within QEN71_RS27675at 6168.393 kb on + strand, within QEN71_RS27675at 6168.393 kb on + strand, within QEN71_RS27675at 6168.393 kb on + strand, within QEN71_RS27675at 6168.393 kb on + strand, within QEN71_RS27675at 6168.394 kb on - strand, within QEN71_RS27675at 6168.394 kb on - strand, within QEN71_RS27675at 6168.396 kb on - strand, within QEN71_RS27675at 6168.555 kb on + strand, within QEN71_RS27675at 6168.730 kb on + strandat 6168.743 kb on + strandat 6168.743 kb on + strandat 6168.743 kb on + strandat 6168.743 kb on + strandat 6168.987 kb on + strand, within QEN71_RS27680at 6168.987 kb on + strand, within QEN71_RS27680at 6168.987 kb on + strand, within QEN71_RS27680at 6168.987 kb on + strand, within QEN71_RS27680at 6168.988 kb on - strand, within QEN71_RS27680at 6168.988 kb on - strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.035 kb on + strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.036 kb on - strand, within QEN71_RS27680at 6169.168 kb on - strand, within QEN71_RS27685at 6169.578 kb on + strand, within QEN71_RS27685at 6169.578 kb on + strand, within QEN71_RS27685at 6169.579 kb on - strand, within QEN71_RS27685at 6169.579 kb on - strand, within QEN71_RS27685at 6169.579 kb on - strand, within QEN71_RS27685at 6169.616 kb on + strand, within QEN71_RS27685

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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6,167,851 + -0.6
6,167,852 - -1.0
6,167,852 - -0.6
6,167,888 + +0.2
6,168,340 - QEN71_RS27675 0.61 -2.0
6,168,393 + QEN71_RS27675 0.67 -0.8
6,168,393 + QEN71_RS27675 0.67 -1.0
6,168,393 + QEN71_RS27675 0.67 -0.8
6,168,393 + QEN71_RS27675 0.67 -0.6
6,168,393 + QEN71_RS27675 0.67 -0.8
6,168,394 - QEN71_RS27675 0.67 -0.8
6,168,394 - QEN71_RS27675 0.67 +0.2
6,168,396 - QEN71_RS27675 0.67 -1.5
6,168,555 + QEN71_RS27675 0.86 +0.2
6,168,730 + +0.6
6,168,743 + +0.0
6,168,743 + +0.6
6,168,743 + +0.3
6,168,743 + -0.5
6,168,987 + QEN71_RS27680 0.71 +1.9
6,168,987 + QEN71_RS27680 0.71 +1.5
6,168,987 + QEN71_RS27680 0.71 +1.9
6,168,987 + QEN71_RS27680 0.71 +2.5
6,168,988 - QEN71_RS27680 0.71 +1.8
6,168,988 - QEN71_RS27680 0.71 +1.0
6,169,035 + QEN71_RS27680 0.87 +1.7
6,169,035 + QEN71_RS27680 0.87 +2.2
6,169,035 + QEN71_RS27680 0.87 +2.2
6,169,035 + QEN71_RS27680 0.87 +1.9
6,169,035 + QEN71_RS27680 0.87 +2.2
6,169,035 + QEN71_RS27680 0.87 -0.3
6,169,035 + QEN71_RS27680 0.87 +2.4
6,169,035 + QEN71_RS27680 0.87 +1.9
6,169,035 + QEN71_RS27680 0.87 +1.6
6,169,035 + QEN71_RS27680 0.87 +2.2
6,169,036 - QEN71_RS27680 0.87 +2.7
6,169,036 - QEN71_RS27680 0.87 +1.6
6,169,036 - QEN71_RS27680 0.87 +1.5
6,169,036 - QEN71_RS27680 0.87 +1.5
6,169,036 - QEN71_RS27680 0.87 +1.8
6,169,036 - QEN71_RS27680 0.87 +2.4
6,169,036 - QEN71_RS27680 0.87 +0.9
6,169,036 - QEN71_RS27680 0.87 +4.0
6,169,036 - QEN71_RS27680 0.87 +1.0
6,169,168 - QEN71_RS27685 0.11 +2.6
6,169,578 + QEN71_RS27685 0.80 +1.0
6,169,578 + QEN71_RS27685 0.80 +2.6
6,169,579 - QEN71_RS27685 0.80 +1.3
6,169,579 - QEN71_RS27685 0.80 +1.2
6,169,579 - QEN71_RS27685 0.80 +0.8
6,169,616 + QEN71_RS27685 0.86 +2.1

Or see this region's nucleotide sequence